Wall clock time and date at job start Tue Mar 31 2020 11:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29933 * 125.37790 * 2 1 4 4 C 1.36067 * 108.47351 * 179.97438 * 3 2 1 5 5 C 1.47425 * 126.44626 * 179.97438 * 4 3 2 6 6 O 1.21613 * 120.00006 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99743 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72398 * 7 5 4 9 9 H 1.08999 * 109.47480 * 35.27807 * 8 7 5 10 10 C 1.52999 * 109.47493 * 155.28120 * 8 7 5 11 11 C 1.50706 * 109.46603 * 295.00080 * 10 8 7 12 12 H 1.08003 * 119.99914 * 359.97438 * 11 10 8 13 13 C 1.37879 * 119.99843 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00198 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99798 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46918 * 90.00082 * 15 13 11 17 17 H 1.48502 * 109.46722 * 209.99863 * 15 13 11 18 18 H 1.48500 * 109.47145 * 329.99897 * 15 13 11 19 19 C 1.50703 * 109.47256 * 275.27951 * 8 7 5 20 20 C 1.38242 * 119.99836 * 319.72549 * 19 8 7 21 21 C 1.38233 * 119.99852 * 179.81099 * 20 19 8 22 22 C 1.38241 * 119.99823 * 0.39897 * 21 20 19 23 23 C 1.38227 * 120.00337 * 359.85584 * 22 21 20 24 24 C 1.38234 * 120.00383 * 140.00388 * 19 8 7 25 25 C 1.36084 * 107.10479 * 0.22993 * 4 3 2 26 26 C 1.50708 * 126.52541 * 179.76737 * 25 4 3 27 27 O 1.34049 * 125.37345 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47260 * 89.99479 * 1 2 3 29 29 H 1.09003 * 109.46843 * 209.99602 * 1 2 3 30 30 H 1.08996 * 109.46884 * 329.99625 * 1 2 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 32 32 H 1.08998 * 109.47257 * 54.99513 * 10 8 7 33 33 H 1.08993 * 109.47436 * 175.00131 * 10 8 7 34 34 H 0.96992 * 120.00089 * 179.97438 * 14 13 11 35 35 H 1.07995 * 119.99996 * 0.02562 * 20 19 8 36 36 H 1.08000 * 119.99735 * 180.23209 * 21 20 19 37 37 H 1.08001 * 119.99396 * 179.83514 * 22 21 20 38 38 H 1.07998 * 120.00107 * 179.97438 * 23 22 21 39 39 H 1.08005 * 119.99831 * 359.97370 * 24 19 8 40 40 H 1.08999 * 109.46720 * 90.00168 * 26 25 4 41 41 H 1.08994 * 109.47317 * 209.99881 * 26 25 4 42 42 H 1.08993 * 109.46933 * 330.00786 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7440 1.5438 0.0003 6 8 5.8605 1.0617 0.0004 7 7 4.5879 2.8825 -0.0002 8 6 5.7632 3.7569 0.0056 9 1 6.5584 3.3009 -0.5842 10 6 5.3932 5.1128 -0.5990 11 6 5.0364 4.9341 -2.0523 12 1 5.0705 3.9517 -2.4999 13 6 4.6663 6.0246 -2.8104 14 7 4.6242 7.2207 -2.2653 15 14 4.2247 5.8032 -4.6119 16 1 2.7691 5.5362 -4.7355 17 1 4.5666 7.0391 -5.3609 18 1 4.9872 4.6583 -5.1714 19 6 6.2376 3.9516 1.4227 20 6 5.3192 4.1226 2.4417 21 6 5.7542 4.2972 3.7421 22 6 7.1078 4.3091 4.0224 23 6 8.0263 4.1434 3.0028 24 6 7.5912 3.9649 1.7029 25 6 3.5660 -0.6971 -0.0043 26 6 4.7802 -1.5898 -0.0105 27 8 2.2831 -1.0930 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 3.6973 3.2670 0.0001 32 1 4.5396 5.5285 -0.0638 33 1 6.2413 5.7921 -0.5141 34 1 4.3643 7.9879 -2.7987 35 1 4.2618 4.1162 2.2223 36 1 5.0366 4.4270 4.5387 37 1 7.4477 4.4482 5.0381 38 1 9.0838 4.1531 3.2217 39 1 8.3088 3.8354 0.9062 40 1 5.0754 -1.8086 1.0156 41 1 4.5445 -2.5202 -0.5270 42 1 5.5988 -1.0861 -0.5245 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293198271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:46 Heat of formation + Delta-G solvation = -25.035765 kcal Electronic energy + Delta-G solvation = -25780.829960 eV Core-core repulsion = 22112.021653 eV Total energy + Delta-G solvation = -3668.808306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.49044 -41.03274 -39.69817 -36.88727 -35.99252 -34.74973 -34.03746 -32.56681 -31.71664 -30.94215 -30.56288 -27.64052 -26.49838 -24.44084 -23.81632 -23.37355 -22.62888 -21.41823 -21.22095 -19.06563 -18.60707 -18.11765 -17.70793 -17.08169 -16.84464 -16.44231 -16.26339 -15.58669 -15.52587 -15.19860 -15.00425 -14.56208 -14.40038 -14.28290 -14.20463 -14.11294 -13.70859 -13.58385 -13.52851 -13.42415 -13.17862 -12.96921 -12.65808 -12.51556 -12.34180 -12.16643 -11.90327 -11.83541 -11.62820 -11.37959 -11.14653 -10.61088 -10.13466 -9.78589 -9.74204 -9.54725 -8.22879 -6.33054 0.01508 0.48694 0.54164 0.97249 1.36398 1.36800 1.44506 1.48026 2.17468 2.25385 2.37434 2.89473 2.98723 3.11139 3.57668 3.74578 3.96435 4.00929 4.14208 4.19178 4.30621 4.32208 4.40963 4.55198 4.61776 4.65541 4.66156 4.72559 4.76008 4.79150 4.89620 5.06952 5.10903 5.17992 5.22873 5.24373 5.38517 5.55907 5.59441 5.62324 5.74414 5.85486 6.13021 6.17834 6.36859 6.65395 6.78290 7.14987 7.35356 8.88038 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.007558 B = 0.005863 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3703.625759 B = 4774.629927 C = 7287.389094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.197 3.803 3 N -0.490 5.490 4 C -0.103 4.103 5 C 0.595 3.405 6 O -0.566 6.566 7 N -0.681 5.681 8 C 0.199 3.801 9 H 0.067 0.933 10 C 0.039 3.961 11 C -0.531 4.531 12 H 0.049 0.951 13 C 0.012 3.988 14 N -0.924 5.924 15 Si 0.956 3.044 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.272 1.272 19 C -0.099 4.099 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.128 4.128 25 C 0.041 3.959 26 C -0.071 4.071 27 O -0.195 6.195 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.407 0.593 32 H 0.007 0.993 33 H 0.010 0.990 34 H 0.265 0.735 35 H 0.109 0.891 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.778 -15.585 10.282 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.013 4.013 3 N -0.220 5.220 4 C -0.221 4.221 5 C 0.382 3.618 6 O -0.446 6.446 7 N -0.328 5.328 8 C 0.094 3.906 9 H 0.085 0.915 10 C 0.002 3.998 11 C -0.569 4.569 12 H 0.067 0.933 13 C -0.187 4.187 14 N -0.564 5.564 15 Si 0.781 3.219 16 H -0.198 1.198 17 H -0.203 1.203 18 H -0.197 1.197 19 C -0.100 4.100 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.147 4.147 25 C -0.016 4.016 26 C -0.127 4.127 27 O -0.083 6.083 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.128 0.872 31 H 0.243 0.757 32 H 0.025 0.975 33 H 0.029 0.971 34 H 0.074 0.926 35 H 0.127 0.873 36 H 0.161 0.839 37 H 0.171 0.829 38 H 0.166 0.834 39 H 0.136 0.864 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.257 -15.089 10.226 18.718 hybrid contribution -0.367 0.092 -1.285 1.339 sum -4.623 -14.997 8.942 18.062 Atomic orbital electron populations 1.20622 0.77172 1.06919 1.06424 1.27303 0.98069 0.77428 0.98478 1.70751 1.00821 1.31490 1.18949 1.21457 0.92124 0.93119 1.15441 1.17014 0.86614 0.82150 0.76072 1.90694 1.25207 1.75561 1.53172 1.45712 1.10499 1.04829 1.71780 1.19857 0.87177 0.91650 0.91866 0.91537 1.19121 0.95915 0.90094 0.94713 1.21362 1.45855 0.93679 0.95996 0.93268 1.25772 0.95320 0.94861 1.02769 1.70062 1.48791 0.99496 1.38047 0.85584 0.78728 0.77661 0.79898 1.19767 1.20344 1.19702 1.20401 0.94704 0.99532 0.95356 1.21023 0.99044 1.00643 0.93545 1.21405 0.97094 0.99902 0.95904 1.21479 0.92696 0.99878 1.00350 1.21413 1.01095 0.99410 0.91902 1.21184 0.94605 1.00739 0.98122 1.24123 0.84901 0.94073 0.98523 1.20653 0.88524 0.97921 1.05565 1.84331 1.15895 1.37983 1.70085 0.87145 0.86422 0.87199 0.75712 0.97468 0.97138 0.92616 0.87270 0.83860 0.82863 0.83381 0.86377 0.87710 0.87302 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.70 10.51 71.24 0.75 0.05 16 2 C 0.20 4.92 8.30 88.39 0.73 5.66 16 3 N -0.49 -16.34 11.06 -293.03 -3.24 -19.58 16 4 C -0.10 -3.68 6.99 40.41 0.28 -3.40 16 5 C 0.59 24.59 7.77 86.66 0.67 25.27 16 6 O -0.57 -24.74 14.47 -4.07 -0.06 -24.80 16 7 N -0.68 -29.22 4.04 -449.36 -1.81 -31.04 16 8 C 0.20 9.07 2.11 44.25 0.09 9.16 16 9 H 0.07 3.26 7.44 -2.39 -0.02 3.24 16 10 C 0.04 2.06 4.49 29.85 0.13 2.20 16 11 C -0.53 -30.35 8.84 25.60 0.23 -30.12 16 12 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 13 C 0.01 0.66 5.46 84.66 0.46 1.13 16 14 N -0.92 -55.48 13.29 21.45 0.28 -55.19 16 15 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 19 C -0.10 -3.98 4.91 -19.86 -0.10 -4.08 16 20 C -0.12 -4.54 9.32 22.27 0.21 -4.33 16 21 C -0.13 -3.68 10.05 22.27 0.22 -3.46 16 22 C -0.13 -3.32 10.05 22.27 0.22 -3.09 16 23 C -0.12 -3.47 10.05 22.27 0.22 -3.24 16 24 C -0.13 -4.62 9.67 22.27 0.22 -4.41 16 25 C 0.04 1.18 7.44 25.19 0.19 1.37 16 26 C -0.07 -1.57 9.88 71.24 0.70 -0.87 16 27 O -0.20 -4.96 10.73 0.34 0.00 -4.95 16 28 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.41 17.54 8.33 -92.71 -0.77 16.77 16 32 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 34 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.11 4.02 7.73 -2.91 -0.02 4.00 16 36 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 37 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 39 H 0.12 4.17 8.04 -2.91 -0.02 4.14 16 40 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.09 2.53 6.48 -2.39 -0.02 2.52 16 Total: -1.00 -74.16 365.51 2.71 -71.45 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.27 Total: 29.18 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 5.24 Total: -12.17 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -4.77 Total: -105.80 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.06 Total: -29.75 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -74.16 2.71 -71.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293198271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.409 kcal (2) G-P(sol) polarization free energy of solvation -74.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds