Wall clock time and date at job start Tue Mar 31 2020 11:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33666 * 126.27806 * 2 1 4 4 C 1.30631 * 109.01311 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.41318 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47010 * 300.10482 * 5 4 3 7 7 C 1.53000 * 109.47100 * 60.10544 * 5 4 3 8 8 O 1.33703 * 109.17397 * 359.97438 * 4 3 2 9 9 C 1.35350 * 107.68420 * 0.02562 * 8 4 3 10 10 C 1.46529 * 126.65371 * 179.97438 * 9 8 4 11 11 O 1.21730 * 119.99953 * 177.07834 * 10 9 8 12 12 N 1.34770 * 120.00532 * 357.07520 * 10 9 8 13 13 C 1.36901 * 120.00641 * 184.08847 * 12 10 9 14 14 H 1.08000 * 120.00679 * 239.23434 * 13 12 10 15 15 C 1.38963 * 119.99880 * 59.23393 * 13 12 10 16 16 N 1.31397 * 119.99990 * 42.84548 * 15 13 12 17 17 Si 1.86801 * 119.99961 * 222.85039 * 15 13 12 18 18 H 1.48503 * 109.47277 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47297 * 119.99533 * 17 15 13 20 20 H 1.48500 * 109.46946 * 239.99436 * 17 15 13 21 21 C 1.39679 * 119.99603 * 4.09426 * 12 10 9 22 22 C 1.38992 * 120.08621 * 83.24778 * 21 12 10 23 23 C 1.38074 * 119.92287 * 179.81230 * 22 21 12 24 24 C 1.38316 * 120.07752 * 0.43988 * 23 22 21 25 25 C 1.38310 * 120.16327 * 359.79316 * 24 23 22 26 26 C 1.38077 * 120.07939 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47417 * 89.97575 * 1 2 3 28 28 H 1.09002 * 109.46984 * 209.96991 * 1 2 3 29 29 H 1.08993 * 109.47463 * 329.97265 * 1 2 3 30 30 H 1.09001 * 109.47191 * 180.10556 * 5 4 3 31 31 H 1.09001 * 109.47083 * 60.00008 * 6 5 4 32 32 H 1.09005 * 109.46881 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.46839 * 299.99768 * 6 5 4 34 34 H 1.08999 * 109.47539 * 60.00132 * 7 5 4 35 35 H 1.09003 * 109.47151 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.47108 * 300.00063 * 7 5 4 37 37 H 0.96994 * 119.99989 * 184.36970 * 16 15 13 38 38 H 1.08000 * 120.03445 * 0.02562 * 22 21 12 39 39 H 1.07998 * 119.95793 * 180.21358 * 23 22 21 40 40 H 1.08001 * 119.91658 * 179.76527 * 24 23 22 41 41 H 1.08000 * 119.96115 * 179.97438 * 25 24 23 42 42 H 1.08006 * 120.03935 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0776 0.0000 4 6 3.5453 0.6899 0.0006 5 6 4.7437 1.6035 0.0013 6 6 4.7112 2.4883 -1.2465 7 6 4.7128 2.4843 1.2520 8 8 3.5899 -0.6464 0.0015 9 6 2.3147 -1.1003 0.0009 10 6 1.8848 -2.5011 0.0011 11 8 0.6997 -2.7741 0.0542 12 7 2.8014 -3.4874 -0.0578 13 6 2.3979 -4.7929 -0.1421 14 1 2.6927 -5.4996 0.6195 15 6 1.6090 -5.2088 -1.2078 16 7 1.8835 -4.8016 -2.4266 17 14 0.1583 -6.3466 -0.9077 18 1 0.0642 -6.6571 0.5414 19 1 -1.0925 -5.6823 -1.3543 20 1 0.3502 -7.6054 -1.6719 21 6 4.1632 -3.1776 -0.0325 22 6 4.8061 -2.9611 1.1806 23 6 6.1532 -2.6588 1.2019 24 6 6.8608 -2.5625 0.0173 25 6 6.2233 -2.7725 -1.1920 26 6 4.8775 -3.0798 -1.2207 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3634 0.8897 0.5142 30 1 5.6557 1.0066 -0.0002 31 1 3.7992 3.0853 -1.2450 32 1 5.5783 3.1489 -1.2462 33 1 4.7333 1.8608 -2.1375 34 1 4.7359 1.8540 2.1410 35 1 5.5794 3.1455 1.2523 36 1 3.8008 3.0812 1.2535 37 1 1.2967 -5.0399 -3.1612 38 1 4.2534 -3.0326 2.1057 39 1 6.6541 -2.4939 2.1443 40 1 7.9136 -2.3222 0.0368 41 1 6.7789 -2.6960 -2.1150 42 1 4.3803 -3.2433 -2.1655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299162290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:46 Heat of formation + Delta-G solvation = 18.586515 kcal Electronic energy + Delta-G solvation = -27188.530854 eV Core-core repulsion = 23521.614151 eV Total energy + Delta-G solvation = -3666.916702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.85166 -39.28887 -37.63906 -35.69094 -34.96826 -34.16950 -32.29286 -30.41297 -30.28773 -28.77322 -27.52552 -27.25468 -25.10088 -23.63776 -22.13249 -21.89570 -21.13501 -20.08740 -19.70158 -17.53041 -17.31892 -16.32735 -15.97824 -15.59177 -15.18227 -14.55817 -14.39245 -14.20544 -14.12988 -13.82547 -13.34099 -13.04087 -12.88127 -12.78358 -12.72875 -12.58177 -12.25983 -12.05345 -11.92009 -11.70396 -11.60067 -11.39302 -11.30267 -11.06749 -10.97631 -10.77480 -10.52687 -10.45635 -10.30533 -10.22564 -9.01234 -8.67958 -8.32226 -8.21214 -8.05541 -7.59118 -6.57396 -4.24152 1.51796 1.94873 2.03291 2.91985 3.01806 3.24049 3.37085 3.42919 3.99999 4.17991 4.26244 4.40822 4.64243 4.85775 4.88229 4.99820 5.07204 5.32719 5.42511 5.44890 5.53364 5.54160 5.63543 5.71234 5.75300 5.79397 5.98709 6.06755 6.07712 6.10586 6.15056 6.20665 6.25383 6.36158 6.44731 6.51641 6.66380 6.84446 6.95876 7.07840 7.35123 7.39183 7.53587 8.05761 8.18666 8.65113 8.74966 9.20804 9.78826 10.42015 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.006135 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.624413 B = 4562.670582 C = 5896.180675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.041 3.959 3 N -0.484 5.484 4 C 0.188 3.812 5 C 0.005 3.995 6 C -0.142 4.142 7 C -0.141 4.141 8 O -0.169 6.169 9 C -0.077 4.077 10 C 0.570 3.430 11 O -0.526 6.526 12 N -0.396 5.396 13 C -0.372 4.372 14 H 0.087 0.913 15 C 0.101 3.899 16 N -0.810 5.810 17 Si 0.899 3.101 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.287 1.287 21 C 0.158 3.842 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.139 4.139 25 C -0.120 4.120 26 C -0.100 4.100 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.271 0.729 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.204 10.910 3.196 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 N -0.215 5.215 4 C -0.017 4.017 5 C -0.014 4.014 6 C -0.199 4.199 7 C -0.199 4.199 8 O -0.054 6.054 9 C -0.133 4.133 10 C 0.358 3.642 11 O -0.406 6.406 12 N -0.113 5.113 13 C -0.495 4.495 14 H 0.104 0.896 15 C -0.115 4.115 16 N -0.439 5.439 17 Si 0.723 3.277 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.214 1.214 21 C 0.068 3.932 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.157 4.157 25 C -0.139 4.139 26 C -0.120 4.120 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.465 11.269 2.997 13.846 hybrid contribution -0.365 -1.278 -0.181 1.341 sum 7.100 9.992 2.816 12.577 Atomic orbital electron populations 1.20241 0.86023 1.03591 1.02984 1.21879 0.97943 0.86632 1.01885 1.70089 1.00369 1.31408 1.19593 1.26242 0.95220 0.80280 0.99996 1.19570 0.90972 0.93036 0.97829 1.21818 1.02911 0.99281 0.95931 1.21813 1.02933 0.99288 0.95832 1.84723 1.29880 1.22424 1.68350 1.23776 0.80702 0.97401 1.11471 1.16755 0.86475 0.80363 0.80635 1.90674 1.15627 1.80851 1.53468 1.40732 1.00270 1.05895 1.64420 1.18739 1.37460 0.84386 1.08879 0.89581 1.25388 0.97414 0.95749 0.92921 1.70268 1.32452 1.42039 0.99132 0.86430 0.82793 0.78832 0.79601 1.18698 1.19959 1.21359 1.18318 0.87514 0.94991 0.92344 1.21274 0.94709 1.01082 0.97268 1.20808 0.93890 1.01480 0.97612 1.20926 0.99064 1.03032 0.92712 1.20950 0.94496 1.01022 0.97438 1.21536 0.93907 0.97670 0.98839 0.90981 0.88688 0.91509 0.88553 0.91327 0.91310 0.92248 0.92306 0.91321 0.91338 0.91841 0.86939 0.86902 0.87044 0.86852 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 9.91 36.00 0.36 -0.94 16 2 C 0.04 0.84 7.16 -82.42 -0.59 0.25 16 3 N -0.48 -9.08 11.25 -7.03 -0.08 -9.16 16 4 C 0.19 3.28 6.82 -12.79 -0.09 3.19 16 5 C 0.01 0.07 3.39 -91.77 -0.31 -0.24 16 6 C -0.14 -1.53 9.18 37.16 0.34 -1.19 16 7 C -0.14 -1.47 9.18 37.16 0.34 -1.13 16 8 O -0.17 -3.42 7.71 4.31 0.03 -3.38 16 9 C -0.08 -1.74 6.86 -36.87 -0.25 -2.00 16 10 C 0.57 14.63 7.39 -12.92 -0.10 14.54 16 11 O -0.53 -14.46 14.16 5.16 0.07 -14.39 16 12 N -0.40 -10.14 2.52 -60.40 -0.15 -10.29 16 13 C -0.37 -10.15 8.57 -15.02 -0.13 -10.28 16 14 H 0.09 2.34 8.06 -52.49 -0.42 1.91 16 15 C 0.10 2.73 4.42 -17.47 -0.08 2.65 16 16 N -0.81 -22.30 13.89 55.50 0.77 -21.53 16 17 Si 0.90 21.40 29.69 -169.99 -5.05 16.36 16 18 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.16 3.55 2.95 -83.73 -0.25 3.30 16 22 C -0.12 -2.41 9.11 -39.36 -0.36 -2.77 16 23 C -0.12 -1.91 10.04 -39.61 -0.40 -2.31 16 24 C -0.14 -2.11 10.04 -39.53 -0.40 -2.51 16 25 C -0.12 -2.05 10.04 -39.61 -0.40 -2.45 16 26 C -0.10 -2.12 9.65 -39.36 -0.38 -2.50 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.09 1.86 6.41 -51.93 -0.33 1.52 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 42 H 0.13 3.01 8.06 -52.48 -0.42 2.58 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -30.97 361.61 -7.44 -38.42 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.81 Total: 2.91 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -2.68 Total: -4.38 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.54 Total: -40.99 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.11 Total: -17.77 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.05 Total: 16.36 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.97 -7.44 -38.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299162290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.005 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds