Wall clock time and date at job start Tue Mar 31 2020 11:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33666 * 126.27806 * 2 1 4 4 C 1.30631 * 109.01311 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.41318 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47010 * 300.10482 * 5 4 3 7 7 C 1.53000 * 109.47100 * 60.10544 * 5 4 3 8 8 O 1.33703 * 109.17397 * 359.97438 * 4 3 2 9 9 C 1.35350 * 107.68420 * 0.02562 * 8 4 3 10 10 C 1.46529 * 126.65371 * 179.97438 * 9 8 4 11 11 O 1.21730 * 119.99953 * 177.07834 * 10 9 8 12 12 N 1.34770 * 120.00532 * 357.07520 * 10 9 8 13 13 C 1.36901 * 120.00641 * 184.08847 * 12 10 9 14 14 H 1.08000 * 120.00679 * 239.23434 * 13 12 10 15 15 C 1.38963 * 119.99880 * 59.23393 * 13 12 10 16 16 N 1.31397 * 119.99990 * 42.84548 * 15 13 12 17 17 Si 1.86801 * 119.99961 * 222.85039 * 15 13 12 18 18 H 1.48503 * 109.47277 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47297 * 119.99533 * 17 15 13 20 20 H 1.48500 * 109.46946 * 239.99436 * 17 15 13 21 21 C 1.39679 * 119.99603 * 4.09426 * 12 10 9 22 22 C 1.38992 * 120.08621 * 83.24778 * 21 12 10 23 23 C 1.38074 * 119.92287 * 179.81230 * 22 21 12 24 24 C 1.38316 * 120.07752 * 0.43988 * 23 22 21 25 25 C 1.38310 * 120.16327 * 359.79316 * 24 23 22 26 26 C 1.38077 * 120.07939 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47417 * 89.97575 * 1 2 3 28 28 H 1.09002 * 109.46984 * 209.96991 * 1 2 3 29 29 H 1.08993 * 109.47463 * 329.97265 * 1 2 3 30 30 H 1.09001 * 109.47191 * 180.10556 * 5 4 3 31 31 H 1.09001 * 109.47083 * 60.00008 * 6 5 4 32 32 H 1.09005 * 109.46881 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.46839 * 299.99768 * 6 5 4 34 34 H 1.08999 * 109.47539 * 60.00132 * 7 5 4 35 35 H 1.09003 * 109.47151 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.47108 * 300.00063 * 7 5 4 37 37 H 0.96994 * 119.99989 * 184.36970 * 16 15 13 38 38 H 1.08000 * 120.03445 * 0.02562 * 22 21 12 39 39 H 1.07998 * 119.95793 * 180.21358 * 23 22 21 40 40 H 1.08001 * 119.91658 * 179.76527 * 24 23 22 41 41 H 1.08000 * 119.96115 * 179.97438 * 25 24 23 42 42 H 1.08006 * 120.03935 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0776 0.0000 4 6 3.5453 0.6899 0.0006 5 6 4.7437 1.6035 0.0013 6 6 4.7112 2.4883 -1.2465 7 6 4.7128 2.4843 1.2520 8 8 3.5899 -0.6464 0.0015 9 6 2.3147 -1.1003 0.0009 10 6 1.8848 -2.5011 0.0011 11 8 0.6997 -2.7741 0.0542 12 7 2.8014 -3.4874 -0.0578 13 6 2.3979 -4.7929 -0.1421 14 1 2.6927 -5.4996 0.6195 15 6 1.6090 -5.2088 -1.2078 16 7 1.8835 -4.8016 -2.4266 17 14 0.1583 -6.3466 -0.9077 18 1 0.0642 -6.6571 0.5414 19 1 -1.0925 -5.6823 -1.3543 20 1 0.3502 -7.6054 -1.6719 21 6 4.1632 -3.1776 -0.0325 22 6 4.8061 -2.9611 1.1806 23 6 6.1532 -2.6588 1.2019 24 6 6.8608 -2.5625 0.0173 25 6 6.2233 -2.7725 -1.1920 26 6 4.8775 -3.0798 -1.2207 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3634 0.8897 0.5142 30 1 5.6557 1.0066 -0.0002 31 1 3.7992 3.0853 -1.2450 32 1 5.5783 3.1489 -1.2462 33 1 4.7333 1.8608 -2.1375 34 1 4.7359 1.8540 2.1410 35 1 5.5794 3.1455 1.2523 36 1 3.8008 3.0812 1.2535 37 1 1.2967 -5.0399 -3.1612 38 1 4.2534 -3.0326 2.1057 39 1 6.6541 -2.4939 2.1443 40 1 7.9136 -2.3222 0.0368 41 1 6.7789 -2.6960 -2.1150 42 1 4.3803 -3.2433 -2.1655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299162290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:44 Heat of formation + Delta-G solvation = -0.643289 kcal Electronic energy + Delta-G solvation = -27189.364720 eV Core-core repulsion = 23521.614151 eV Total energy + Delta-G solvation = -3667.750569 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.38423 -40.99598 -39.29103 -36.81447 -36.59276 -35.82968 -34.25398 -31.90119 -31.71444 -30.34789 -29.17732 -28.07502 -26.90949 -25.07650 -23.67763 -23.33045 -22.72350 -21.41046 -21.28669 -19.42480 -18.95951 -17.88286 -17.33232 -17.09069 -16.96508 -16.23675 -16.07529 -15.70258 -15.47633 -15.13185 -14.89201 -14.61078 -14.28481 -14.21121 -14.11773 -14.00037 -13.86496 -13.37079 -13.32818 -13.21064 -13.04438 -12.75336 -12.66793 -12.34576 -12.26593 -12.21283 -12.09139 -11.98728 -11.88839 -11.69877 -10.89940 -10.69653 -9.89316 -9.74695 -9.65452 -9.37876 -8.59736 -6.32698 -0.09332 0.51433 0.59754 1.25167 1.39473 1.42941 1.50168 1.56944 2.11674 2.34463 2.67451 2.84780 2.98105 3.01839 3.72182 3.74292 3.99383 4.08725 4.13207 4.17796 4.22365 4.35808 4.48871 4.55694 4.63611 4.67616 4.78029 4.79126 4.81511 4.91560 4.93158 4.94484 5.00348 5.11309 5.22983 5.26618 5.32249 5.33105 5.45192 5.58938 5.67636 5.81395 6.04019 6.22002 6.54480 6.69151 6.82429 7.25102 7.85014 8.39068 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.006135 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.624413 B = 4562.670582 C = 5896.180675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.048 3.952 3 N -0.495 5.495 4 C 0.207 3.793 5 C 0.002 3.998 6 C -0.138 4.138 7 C -0.135 4.135 8 O -0.173 6.173 9 C -0.118 4.118 10 C 0.559 3.441 11 O -0.565 6.565 12 N -0.405 5.405 13 C -0.395 4.395 14 H 0.075 0.925 15 C 0.066 3.934 16 N -0.840 5.840 17 Si 0.950 3.050 18 H -0.264 1.264 19 H -0.283 1.283 20 H -0.267 1.267 21 C 0.126 3.874 22 C -0.138 4.138 23 C -0.105 4.105 24 C -0.118 4.118 25 C -0.113 4.113 26 C -0.126 4.126 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.274 0.726 38 H 0.103 0.897 39 H 0.154 0.846 40 H 0.163 0.837 41 H 0.142 0.858 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.574 13.160 4.001 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 N -0.225 5.225 4 C 0.001 3.999 5 C -0.018 4.018 6 C -0.195 4.195 7 C -0.193 4.193 8 O -0.060 6.060 9 C -0.174 4.174 10 C 0.349 3.651 11 O -0.448 6.448 12 N -0.122 5.122 13 C -0.519 4.519 14 H 0.093 0.907 15 C -0.147 4.147 16 N -0.470 5.470 17 Si 0.773 3.227 18 H -0.188 1.188 19 H -0.209 1.209 20 H -0.192 1.192 21 C 0.037 3.963 22 C -0.157 4.157 23 C -0.123 4.123 24 C -0.135 4.135 25 C -0.131 4.131 26 C -0.146 4.146 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.172 0.828 40 H 0.181 0.819 41 H 0.160 0.840 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.861 13.510 3.803 17.747 hybrid contribution -1.213 -1.791 -0.385 2.197 sum 9.648 11.719 3.418 15.560 Atomic orbital electron populations 1.20261 0.84870 1.04079 1.03373 1.22290 0.98977 0.86650 0.99690 1.70174 1.00841 1.30399 1.21045 1.27657 0.96573 0.79807 0.95858 1.20066 0.89108 0.92800 0.99785 1.21832 1.04259 0.99091 0.94329 1.21820 1.04214 0.99082 0.94180 1.84706 1.28777 1.23669 1.68812 1.23180 0.82126 0.96368 1.15718 1.17122 0.86216 0.81811 0.79946 1.90606 1.16870 1.82071 1.55283 1.40797 1.01965 1.05344 1.64067 1.18791 1.39004 0.85355 1.08757 0.90746 1.26056 0.98836 0.97144 0.92640 1.70298 1.33217 1.43877 0.99655 0.85641 0.79587 0.77954 0.79474 1.18767 1.20871 1.19231 1.18479 0.85971 0.97841 0.94004 1.21333 0.96530 1.02181 0.95686 1.21259 0.92102 0.98943 0.99995 1.21445 1.01126 0.99928 0.91041 1.21268 0.92587 0.99338 0.99920 1.21357 0.95954 1.00493 0.96786 0.90539 0.90544 0.88520 0.86841 0.92270 0.87475 0.93519 0.92906 0.87589 0.92306 0.91576 0.87869 0.82802 0.81923 0.83976 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.56 9.91 71.23 0.71 -1.86 16 2 C 0.05 2.03 7.16 41.87 0.30 2.33 16 3 N -0.49 -18.31 11.25 -290.91 -3.27 -21.58 16 4 C 0.21 6.97 6.82 88.29 0.60 7.57 16 5 C 0.00 0.04 3.39 -11.54 -0.04 0.00 16 6 C -0.14 -2.51 9.18 71.98 0.66 -1.85 16 7 C -0.14 -2.30 9.18 71.98 0.66 -1.64 16 8 O -0.17 -7.08 7.71 -7.50 -0.06 -7.14 16 9 C -0.12 -5.57 6.86 24.03 0.16 -5.40 16 10 C 0.56 30.64 7.39 86.41 0.64 31.28 16 11 O -0.56 -33.25 14.16 -4.44 -0.06 -33.31 16 12 N -0.41 -22.08 2.52 -463.21 -1.17 -23.25 16 13 C -0.40 -22.98 8.57 84.08 0.72 -22.26 16 14 H 0.07 4.33 8.06 -2.91 -0.02 4.31 16 15 C 0.07 3.75 4.42 84.93 0.38 4.13 16 16 N -0.84 -48.89 13.89 21.67 0.30 -48.59 16 17 Si 0.95 45.89 29.69 68.60 2.04 47.93 16 18 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 C 0.13 5.87 2.95 38.25 0.11 5.98 16 22 C -0.14 -5.34 9.11 22.41 0.20 -5.14 16 23 C -0.10 -2.97 10.04 22.25 0.22 -2.74 16 24 C -0.12 -3.00 10.04 22.31 0.22 -2.78 16 25 C -0.11 -3.57 10.04 22.25 0.22 -3.35 16 26 C -0.13 -5.50 9.65 22.41 0.22 -5.28 16 27 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.08 3.16 6.41 -2.39 -0.02 3.14 16 29 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 32 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.10 4.08 8.06 -2.91 -0.02 4.05 16 39 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 40 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 42 H 0.09 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -74.45 361.61 4.79 -69.66 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 1.02 Total: 17.29 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 5.99 Total: -1.01 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -4.14 Total: -93.42 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.12 Total: -40.45 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.04 Total: 47.93 kcal Total: -74.45 4.79 -69.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299162290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.018 kcal (2) G-P(sol) polarization free energy of solvation -74.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds