Wall clock time and date at job start Tue Mar 31 2020 11:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30253 * 125.61800 * 2 1 4 4 C 1.34477 * 108.69662 * 180.18972 * 3 2 1 5 5 C 1.50705 * 126.16468 * 179.82517 * 4 3 2 6 6 C 1.53005 * 109.46980 * 269.69097 * 5 4 3 7 7 N 1.46502 * 109.46869 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99949 * 179.97438 * 7 6 5 9 9 O 1.21549 * 119.99653 * 0.02562 * 8 7 6 10 10 C 1.47882 * 119.99923 * 179.97438 * 8 7 6 11 11 C 1.39917 * 120.02536 * 359.97438 * 10 8 7 12 12 C 1.38332 * 120.35896 * 180.02562 * 11 10 8 13 13 C 1.37755 * 120.40966 * 359.97438 * 12 11 10 14 14 C 1.40742 * 120.04148 * 0.02562 * 13 12 11 15 15 C 1.41438 * 120.17962 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99445 * 335.20844 * 15 14 13 17 17 C 1.39934 * 120.00358 * 155.21234 * 15 14 13 18 18 N 1.30832 * 119.99780 * 342.28511 * 17 15 14 19 19 Si 1.86793 * 120.00293 * 162.28347 * 17 15 14 20 20 H 1.48505 * 109.46969 * 90.00053 * 19 17 15 21 21 H 1.48496 * 109.47429 * 209.99807 * 19 17 15 22 22 H 1.48503 * 109.47001 * 330.00084 * 19 17 15 23 23 C 1.38994 * 120.02734 * 180.02562 * 10 8 7 24 24 C 1.34328 * 107.67379 * 359.56566 * 4 3 2 25 25 C 1.50693 * 126.44868 * 180.24287 * 24 4 3 26 26 O 1.33969 * 125.61937 * 179.71148 * 2 1 3 27 27 H 1.09004 * 109.47321 * 180.31061 * 1 2 3 28 28 H 1.08997 * 109.47480 * 300.31544 * 1 2 3 29 29 H 1.09003 * 109.47214 * 60.31455 * 1 2 3 30 30 H 1.08993 * 109.47032 * 149.69062 * 5 4 3 31 31 H 1.09001 * 109.46948 * 29.68977 * 5 4 3 32 32 H 1.09000 * 109.46972 * 60.00354 * 6 5 4 33 33 H 1.08993 * 109.47177 * 300.00024 * 6 5 4 34 34 H 0.97004 * 119.99742 * 0.02562 * 7 6 5 35 35 H 1.08000 * 119.82372 * 0.04089 * 11 10 8 36 36 H 1.07999 * 119.79920 * 179.97438 * 12 11 10 37 37 H 1.08001 * 119.97665 * 180.02562 * 13 12 11 38 38 H 0.96997 * 120.00049 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.19649 * 0.25919 * 23 10 8 40 40 H 1.09004 * 109.47160 * 89.99675 * 25 24 4 41 41 H 1.08997 * 109.47462 * 209.99469 * 25 24 4 42 42 H 1.09002 * 109.47191 * 329.99851 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6674 -0.0042 5 6 4.7571 1.5726 -0.0094 6 6 5.1643 1.8713 -1.4537 7 7 6.3353 2.7517 -1.4588 8 6 6.8739 3.1499 -2.6283 9 8 6.3879 2.7789 -3.6788 10 6 8.0556 4.0391 -2.6334 11 6 8.6145 4.4677 -1.4244 12 6 9.7194 5.2999 -1.4211 13 6 10.2826 5.7158 -2.6075 14 6 9.7343 5.2950 -3.8335 15 6 10.3105 5.7199 -5.0533 16 1 10.8787 6.6376 -5.0913 17 6 10.1444 4.9513 -6.2108 18 7 9.7725 3.7005 -6.1177 19 14 10.4536 5.7113 -7.8889 20 1 11.8774 5.5188 -8.2647 21 1 9.5826 5.0558 -8.8973 22 1 10.1467 7.1634 -7.8388 23 6 8.6112 4.4506 -3.8391 24 6 3.5698 -0.6757 0.0028 25 6 4.7936 -1.5549 0.0067 26 8 2.2872 -1.0890 0.0055 27 1 -0.3634 -1.0277 0.0056 28 1 -0.3634 0.5187 0.8871 29 1 -0.3634 0.5089 -0.8928 30 1 5.5822 1.0820 0.5067 31 1 4.5131 2.5051 0.4995 32 1 4.3391 2.3619 -1.9698 33 1 5.4082 0.9388 -1.9627 34 1 6.7233 3.0474 -0.6203 35 1 8.1810 4.1468 -0.4887 36 1 10.1433 5.6255 -0.4827 37 1 11.1455 6.3652 -2.5967 38 1 9.6577 3.1676 -6.9200 39 1 8.1800 4.1262 -4.7747 40 1 5.0894 -1.7615 1.0353 41 1 4.5691 -2.4924 -0.5020 42 1 5.6077 -1.0469 -0.5104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340575086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:32 Heat of formation + Delta-G solvation = -11.733320 kcal Electronic energy + Delta-G solvation = -24491.835619 eV Core-core repulsion = 20823.604150 eV Total energy + Delta-G solvation = -3668.231469 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.55768 -39.19305 -37.09265 -35.97336 -34.53680 -33.77301 -33.41100 -30.79427 -30.40778 -29.54555 -29.34275 -25.71891 -25.20034 -23.75013 -22.04404 -21.74534 -20.92887 -20.69281 -19.46092 -17.74006 -17.12169 -16.68001 -16.15726 -15.53688 -15.42912 -15.03478 -14.62458 -14.44328 -14.32058 -13.81096 -13.70980 -13.41616 -13.23415 -13.03948 -12.99223 -12.80863 -12.65185 -12.51448 -12.47755 -12.22820 -11.67301 -11.41142 -11.12987 -11.07144 -11.03904 -10.74580 -10.64039 -10.48599 -10.03096 -9.68565 -9.20383 -9.03588 -8.69866 -8.65855 -7.62091 -7.51300 -6.79531 -4.40588 1.21188 2.22276 2.40461 2.44256 2.82040 3.08405 3.11336 3.17118 3.57130 3.87716 3.88106 3.93227 4.48844 4.63611 4.65006 4.80277 4.93847 4.96504 5.05120 5.15153 5.18747 5.32201 5.37676 5.49157 5.61122 5.66633 5.73236 5.85525 6.02005 6.04821 6.09846 6.16426 6.28086 6.72568 6.85143 6.99407 7.02528 7.21780 7.38867 7.55634 7.70808 7.76496 7.93266 8.10128 8.19994 8.51221 8.80959 8.84192 8.96517 10.15342 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.020955 B = 0.002461 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.896444 B =11374.432593 C =12000.936490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.183 3.817 3 N -0.474 5.474 4 C -0.005 4.005 5 C -0.049 4.049 6 C 0.129 3.871 7 N -0.737 5.737 8 C 0.564 3.436 9 O -0.546 6.546 10 C -0.127 4.127 11 C -0.218 4.218 12 C -0.098 4.098 13 C -0.212 4.212 14 C 0.098 3.902 15 C -0.460 4.460 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.783 5.783 19 Si 0.909 3.091 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.092 4.092 24 C -0.044 4.044 25 C -0.070 4.070 26 O -0.203 6.203 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.399 0.601 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.284 0.716 39 H 0.133 0.867 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.320 -9.317 12.366 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.024 4.024 3 N -0.204 5.204 4 C -0.125 4.125 5 C -0.087 4.087 6 C 0.005 3.995 7 N -0.392 5.392 8 C 0.355 3.645 9 O -0.423 6.423 10 C -0.131 4.131 11 C -0.238 4.238 12 C -0.116 4.116 13 C -0.232 4.232 14 C 0.096 3.904 15 C -0.489 4.489 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.408 5.408 19 Si 0.733 3.267 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.112 4.112 24 C -0.097 4.097 25 C -0.127 4.127 26 O -0.091 6.091 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.235 0.765 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.151 0.849 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.980 -9.246 11.450 19.624 hybrid contribution 0.546 -0.352 -0.281 0.707 sum -12.435 -9.598 11.169 19.274 Atomic orbital electron populations 1.20229 0.81304 1.04559 1.05080 1.26208 0.96393 0.78613 1.01164 1.70320 1.01619 1.30280 1.18166 1.21187 0.92911 0.91799 1.06612 1.20099 0.92215 0.98789 0.97589 1.21108 0.88716 0.94637 0.95042 1.45916 1.31868 1.51995 1.09398 1.18847 0.83381 0.79687 0.82624 1.90701 1.62959 1.57064 1.31620 1.19458 0.96565 1.01693 0.95340 1.20339 1.01786 1.07015 0.94669 1.20437 0.96247 0.98310 0.96624 1.21099 1.01975 1.07714 0.92401 1.17601 0.90034 0.90246 0.92532 1.19576 1.29496 1.07411 0.92371 0.90084 1.25967 0.92850 0.94125 1.01673 1.69791 1.32696 1.06312 1.31958 0.86291 0.78987 0.80619 0.80764 1.19443 1.19957 1.18371 1.21629 0.94886 0.98501 0.96201 1.23211 0.83869 0.95058 1.07512 1.20331 0.90116 0.98458 1.03804 1.84376 1.16604 1.37778 1.70306 0.89512 0.88581 0.88479 0.89502 0.89262 0.91513 0.91873 0.76524 0.89194 0.88888 0.88619 0.90448 0.84907 0.89723 0.90211 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.33 10.51 36.01 0.38 0.05 16 2 C 0.18 2.04 8.34 -12.95 -0.11 1.93 16 3 N -0.47 -6.41 11.29 -7.35 -0.08 -6.49 16 4 C 0.00 -0.06 6.36 -82.81 -0.53 -0.59 16 5 C -0.05 -0.55 5.49 -27.88 -0.15 -0.71 16 6 C 0.13 1.91 5.66 -4.04 -0.02 1.89 16 7 N -0.74 -12.29 5.51 -61.24 -0.34 -12.63 16 8 C 0.56 12.53 7.77 -12.31 -0.10 12.43 16 9 O -0.55 -14.03 16.33 5.32 0.09 -13.94 16 10 C -0.13 -3.02 5.87 -105.04 -0.62 -3.64 16 11 C -0.22 -4.56 9.55 -38.92 -0.37 -4.93 16 12 C -0.10 -2.08 10.01 -39.72 -0.40 -2.48 16 13 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 14 C 0.10 2.62 5.57 -106.88 -0.60 2.02 16 15 C -0.46 -12.12 9.05 -37.73 -0.34 -12.47 16 16 H 0.08 2.02 7.91 -52.48 -0.41 1.61 16 17 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 18 N -0.78 -20.88 10.97 55.55 0.61 -20.27 16 19 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 C -0.09 -2.47 8.23 -38.44 -0.32 -2.79 16 24 C -0.04 -0.49 7.39 -35.69 -0.26 -0.76 16 25 C -0.07 -0.55 10.04 36.00 0.36 -0.19 16 26 O -0.20 -2.37 10.78 5.36 0.06 -2.31 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.79 7.79 -51.93 -0.40 0.38 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 5.58 6.49 -40.82 -0.26 5.32 16 35 H 0.09 1.53 6.38 -52.49 -0.33 1.19 16 36 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 37 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 39 H 0.13 3.87 5.77 -52.49 -0.30 3.57 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.73 7.80 -51.93 -0.40 0.33 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -33.09 362.23 -8.26 -41.36 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.49 Total: 8.85 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -3.54 Total: -13.88 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.19 Total: -39.38 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.14 Total: -16.25 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.09 -8.26 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340575086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.624 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds