Wall clock time and date at job start Tue Mar 31 2020 11:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30253 * 125.61800 * 2 1 4 4 C 1.34477 * 108.69662 * 180.18972 * 3 2 1 5 5 C 1.50705 * 126.16468 * 179.82517 * 4 3 2 6 6 C 1.53005 * 109.46980 * 269.69097 * 5 4 3 7 7 N 1.46502 * 109.46869 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99949 * 179.97438 * 7 6 5 9 9 O 1.21549 * 119.99653 * 0.02562 * 8 7 6 10 10 C 1.47882 * 119.99923 * 179.97438 * 8 7 6 11 11 C 1.39917 * 120.02536 * 359.97438 * 10 8 7 12 12 C 1.38332 * 120.35896 * 180.02562 * 11 10 8 13 13 C 1.37755 * 120.40966 * 359.97438 * 12 11 10 14 14 C 1.40742 * 120.04148 * 0.02562 * 13 12 11 15 15 C 1.41438 * 120.17962 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99445 * 335.20844 * 15 14 13 17 17 C 1.39934 * 120.00358 * 155.21234 * 15 14 13 18 18 N 1.30832 * 119.99780 * 342.28511 * 17 15 14 19 19 Si 1.86793 * 120.00293 * 162.28347 * 17 15 14 20 20 H 1.48505 * 109.46969 * 90.00053 * 19 17 15 21 21 H 1.48496 * 109.47429 * 209.99807 * 19 17 15 22 22 H 1.48503 * 109.47001 * 330.00084 * 19 17 15 23 23 C 1.38994 * 120.02734 * 180.02562 * 10 8 7 24 24 C 1.34328 * 107.67379 * 359.56566 * 4 3 2 25 25 C 1.50693 * 126.44868 * 180.24287 * 24 4 3 26 26 O 1.33969 * 125.61937 * 179.71148 * 2 1 3 27 27 H 1.09004 * 109.47321 * 180.31061 * 1 2 3 28 28 H 1.08997 * 109.47480 * 300.31544 * 1 2 3 29 29 H 1.09003 * 109.47214 * 60.31455 * 1 2 3 30 30 H 1.08993 * 109.47032 * 149.69062 * 5 4 3 31 31 H 1.09001 * 109.46948 * 29.68977 * 5 4 3 32 32 H 1.09000 * 109.46972 * 60.00354 * 6 5 4 33 33 H 1.08993 * 109.47177 * 300.00024 * 6 5 4 34 34 H 0.97004 * 119.99742 * 0.02562 * 7 6 5 35 35 H 1.08000 * 119.82372 * 0.04089 * 11 10 8 36 36 H 1.07999 * 119.79920 * 179.97438 * 12 11 10 37 37 H 1.08001 * 119.97665 * 180.02562 * 13 12 11 38 38 H 0.96997 * 120.00049 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.19649 * 0.25919 * 23 10 8 40 40 H 1.09004 * 109.47160 * 89.99675 * 25 24 4 41 41 H 1.08997 * 109.47462 * 209.99469 * 25 24 4 42 42 H 1.09002 * 109.47191 * 329.99851 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6674 -0.0042 5 6 4.7571 1.5726 -0.0094 6 6 5.1643 1.8713 -1.4537 7 7 6.3353 2.7517 -1.4588 8 6 6.8739 3.1499 -2.6283 9 8 6.3879 2.7789 -3.6788 10 6 8.0556 4.0391 -2.6334 11 6 8.6145 4.4677 -1.4244 12 6 9.7194 5.2999 -1.4211 13 6 10.2826 5.7158 -2.6075 14 6 9.7343 5.2950 -3.8335 15 6 10.3105 5.7199 -5.0533 16 1 10.8787 6.6376 -5.0913 17 6 10.1444 4.9513 -6.2108 18 7 9.7725 3.7005 -6.1177 19 14 10.4536 5.7113 -7.8889 20 1 11.8774 5.5188 -8.2647 21 1 9.5826 5.0558 -8.8973 22 1 10.1467 7.1634 -7.8388 23 6 8.6112 4.4506 -3.8391 24 6 3.5698 -0.6757 0.0028 25 6 4.7936 -1.5549 0.0067 26 8 2.2872 -1.0890 0.0055 27 1 -0.3634 -1.0277 0.0056 28 1 -0.3634 0.5187 0.8871 29 1 -0.3634 0.5089 -0.8928 30 1 5.5822 1.0820 0.5067 31 1 4.5131 2.5051 0.4995 32 1 4.3391 2.3619 -1.9698 33 1 5.4082 0.9388 -1.9627 34 1 6.7233 3.0474 -0.6203 35 1 8.1810 4.1468 -0.4887 36 1 10.1433 5.6255 -0.4827 37 1 11.1455 6.3652 -2.5967 38 1 9.6577 3.1676 -6.9200 39 1 8.1800 4.1262 -4.7747 40 1 5.0894 -1.7615 1.0353 41 1 4.5691 -2.4924 -0.5020 42 1 5.6077 -1.0469 -0.5104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340575086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:31 Heat of formation + Delta-G solvation = -34.824776 kcal Electronic energy + Delta-G solvation = -24492.836940 eV Core-core repulsion = 20823.604150 eV Total energy + Delta-G solvation = -3669.232790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.39798 -40.91775 -38.86865 -37.15219 -35.74763 -35.50335 -34.42675 -32.36174 -31.29873 -30.98077 -30.78928 -27.28629 -26.48155 -24.91356 -23.53830 -22.79775 -22.63060 -21.71111 -21.05763 -19.50958 -18.10261 -17.84651 -17.56475 -17.08526 -16.73809 -16.61032 -16.38339 -15.51837 -15.45207 -15.17938 -14.93716 -14.61207 -14.43684 -14.27371 -14.25248 -13.85625 -13.55206 -13.51909 -13.43071 -13.33473 -13.15571 -12.94435 -12.77910 -12.55695 -12.42234 -12.20260 -11.99669 -11.91994 -11.52811 -11.50299 -11.06182 -10.83479 -10.20692 -9.52770 -9.46590 -9.37682 -8.66571 -6.37622 0.37862 0.39034 1.01561 1.35950 1.46273 1.50749 1.52282 1.69594 2.08930 2.19241 2.22140 2.78929 3.07645 3.69619 3.71603 3.76155 3.89274 4.07108 4.09225 4.23749 4.38824 4.45321 4.53683 4.61227 4.61615 4.62620 4.66459 4.83979 4.88448 4.93435 4.94510 5.08291 5.09373 5.19546 5.20805 5.31087 5.33703 5.40642 5.52598 5.87250 5.93206 6.05939 6.29420 6.50953 6.68487 6.71062 6.88303 6.95274 7.29087 8.30378 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.020955 B = 0.002461 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.896444 B =11374.432593 C =12000.936490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.180 3.820 3 N -0.512 5.512 4 C -0.034 4.034 5 C -0.034 4.034 6 C 0.134 3.866 7 N -0.710 5.710 8 C 0.560 3.440 9 O -0.592 6.592 10 C -0.138 4.138 11 C -0.195 4.195 12 C -0.096 4.096 13 C -0.216 4.216 14 C 0.066 3.934 15 C -0.498 4.498 16 H 0.084 0.916 17 C 0.028 3.972 18 N -0.826 5.826 19 Si 0.982 3.018 20 H -0.256 1.256 21 H -0.274 1.274 22 H -0.255 1.255 23 C -0.132 4.132 24 C -0.045 4.045 25 C -0.071 4.071 26 O -0.211 6.211 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.416 0.584 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.109 0.891 38 H 0.286 0.714 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.379 -9.599 15.137 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.027 4.027 3 N -0.242 5.242 4 C -0.153 4.153 5 C -0.072 4.072 6 C 0.010 3.990 7 N -0.363 5.363 8 C 0.350 3.650 9 O -0.473 6.473 10 C -0.141 4.141 11 C -0.215 4.215 12 C -0.113 4.113 13 C -0.236 4.236 14 C 0.064 3.936 15 C -0.527 4.527 16 H 0.102 0.898 17 C -0.186 4.186 18 N -0.451 5.451 19 Si 0.802 3.198 20 H -0.180 1.180 21 H -0.198 1.198 22 H -0.179 1.179 23 C -0.153 4.153 24 C -0.098 4.098 25 C -0.127 4.127 26 O -0.099 6.099 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.255 0.745 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.106 0.894 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.033 -9.521 14.296 21.561 hybrid contribution 0.465 -0.308 -0.908 1.066 sum -12.568 -9.829 13.387 20.827 Atomic orbital electron populations 1.20497 0.78260 1.06327 1.06033 1.27166 0.97946 0.78034 0.99576 1.70303 1.02474 1.31639 1.19804 1.21396 0.93022 0.92633 1.08252 1.20008 0.92931 0.99337 0.94916 1.21142 0.86869 0.93445 0.97544 1.45645 1.31518 1.50807 1.08352 1.18786 0.83212 0.79573 0.83428 1.90678 1.64206 1.58778 1.33675 1.19743 0.97092 1.01717 0.95577 1.20885 1.00595 1.04675 0.95308 1.20948 0.95717 0.97135 0.97537 1.21424 1.02284 1.07373 0.92502 1.17951 0.90499 0.91158 0.94042 1.19853 1.31116 1.08139 0.93576 0.89767 1.26860 0.92183 0.94199 1.05399 1.69893 1.34584 1.07783 1.32879 0.85212 0.79331 0.79599 0.75669 1.18033 1.19842 1.17871 1.21434 0.96446 1.01173 0.96244 1.23811 0.84578 0.95262 1.06126 1.20503 0.88622 0.98207 1.05379 1.84399 1.16962 1.38141 1.70425 0.87364 0.87100 0.87821 0.86482 0.88804 0.93962 0.92372 0.74477 0.84163 0.84140 0.87305 0.90360 0.88557 0.87482 0.89363 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.57 10.51 71.24 0.75 0.18 16 2 C 0.18 3.83 8.34 88.34 0.74 4.56 16 3 N -0.51 -13.54 11.29 -291.98 -3.30 -16.84 16 4 C -0.03 -0.81 6.36 41.26 0.26 -0.55 16 5 C -0.03 -0.70 5.49 29.85 0.16 -0.54 16 6 C 0.13 3.85 5.66 86.38 0.49 4.34 16 7 N -0.71 -22.46 5.51 -465.93 -2.57 -25.02 16 8 C 0.56 25.04 7.77 86.80 0.67 25.72 16 9 O -0.59 -31.81 16.33 -3.87 -0.06 -31.88 16 10 C -0.14 -6.55 5.87 -20.14 -0.12 -6.67 16 11 C -0.20 -7.50 9.55 22.70 0.22 -7.29 16 12 C -0.10 -3.72 10.01 22.18 0.22 -3.49 16 13 C -0.22 -10.06 9.78 22.77 0.22 -9.84 16 14 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 15 C -0.50 -27.35 9.05 23.47 0.21 -27.13 16 16 H 0.08 4.35 7.91 -2.91 -0.02 4.33 16 17 C 0.03 1.50 5.14 85.25 0.44 1.94 16 18 N -0.83 -46.68 10.97 21.82 0.24 -46.44 16 19 Si 0.98 40.14 29.59 68.60 2.03 42.17 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 C -0.13 -7.45 8.23 23.01 0.19 -7.26 16 24 C -0.04 -0.95 7.39 24.79 0.18 -0.76 16 25 C -0.07 -0.94 10.04 71.23 0.72 -0.23 16 26 O -0.21 -4.68 10.78 -3.74 -0.04 -4.72 16 27 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.12 1.69 7.79 -2.39 -0.02 1.67 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.42 10.08 6.49 -92.71 -0.60 9.48 16 35 H 0.14 3.94 6.38 -2.91 -0.02 3.92 16 36 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 37 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 38 H 0.29 14.91 8.30 -92.71 -0.77 14.14 16 39 H 0.10 6.06 5.77 -2.91 -0.02 6.05 16 40 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.10 1.27 7.80 -2.39 -0.02 1.26 16 Total: -1.00 -77.99 362.23 1.99 -75.99 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.45 Total: 30.27 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 5.24 Total: -23.54 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -5.62 Total: -88.30 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.10 Total: -36.60 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -77.99 1.99 -75.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340575086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.167 kcal (2) G-P(sol) polarization free energy of solvation -77.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds