Wall clock time and date at job start Tue Mar 31 2020 10:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35833 * 116.99482 * 2 1 4 4 C 1.39902 * 119.72208 * 359.97438 * 3 2 1 5 5 C 1.35891 * 120.99095 * 180.02562 * 4 3 2 6 6 C 1.40778 * 119.95872 * 0.22486 * 5 4 3 7 7 N 1.33533 * 120.84430 * 179.72531 * 6 5 4 8 8 C 1.30980 * 121.87910 * 180.02562 * 7 6 5 9 9 C 1.50702 * 119.04934 * 180.02562 * 8 7 6 10 10 C 1.39243 * 121.90709 * 359.97438 * 8 7 6 11 11 C 1.38929 * 119.55702 * 359.49632 * 10 8 7 12 12 C 1.47826 * 121.11100 * 179.97438 * 11 10 8 13 13 O 1.21558 * 119.99350 * 174.08269 * 12 11 10 14 14 N 1.34772 * 120.00412 * 354.08422 * 12 11 10 15 15 C 1.46495 * 120.00023 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47227 * 179.97438 * 15 14 12 17 17 C 1.50698 * 109.47322 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99796 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00084 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00411 * 180.02562 * 19 17 16 21 21 Si 1.86809 * 119.99944 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47136 * 90.00008 * 21 19 17 23 23 H 1.48506 * 109.46731 * 210.00223 * 21 19 17 24 24 H 1.48499 * 109.46894 * 329.99912 * 21 19 17 25 25 C 1.41735 * 119.18696 * 359.48518 * 6 5 4 26 26 C 1.37753 * 119.71527 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47447 * 299.99751 * 1 2 3 28 28 H 1.09000 * 109.47145 * 60.00561 * 1 2 3 29 29 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.50099 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.02262 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47259 * 89.99696 * 9 8 7 33 33 H 1.08998 * 109.46834 * 210.00202 * 9 8 7 34 34 H 1.08997 * 109.46793 * 329.99773 * 9 8 7 35 35 H 1.07999 * 120.22302 * 180.02562 * 10 8 7 36 36 H 0.97001 * 119.99644 * 0.02562 * 14 12 11 37 37 H 1.09000 * 109.47245 * 299.99538 * 15 14 12 38 38 H 1.09005 * 109.47365 * 60.00240 * 15 14 12 39 39 H 1.08996 * 109.47453 * 300.00496 * 16 15 14 40 40 H 1.09005 * 109.46502 * 60.00018 * 16 15 14 41 41 H 0.96993 * 120.00225 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.24675 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.2778 2.3799 -0.0005 5 6 1.8677 3.6041 -0.0011 6 6 3.2716 3.7080 -0.0059 7 7 3.8698 4.9019 -0.0120 8 6 5.1740 5.0221 -0.0170 9 6 5.7817 6.4012 -0.0232 10 6 6.0154 3.9126 -0.0158 11 6 5.4667 2.6364 0.0016 12 6 6.3276 1.4348 0.0029 13 8 5.8316 0.3319 0.1267 14 7 7.6624 1.5619 -0.1332 15 6 8.5155 0.3710 -0.1324 16 6 9.9772 0.7905 -0.3014 17 6 10.8548 -0.4345 -0.3000 18 1 10.4141 -1.4144 -0.1901 19 6 12.2203 -0.3045 -0.4390 20 7 12.9863 -1.3736 -0.4383 21 14 12.9827 1.3905 -0.6284 22 1 13.3171 1.9353 0.7119 23 1 14.2194 1.2885 -1.4442 24 1 12.0174 2.2947 -1.3036 25 6 4.0523 2.5250 0.0010 26 6 3.4216 1.2757 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2002 2.3086 -0.0005 31 1 1.2598 4.4968 -0.0019 32 1 5.9319 6.7366 1.0030 33 1 6.7407 6.3732 -0.5404 34 1 5.1120 7.0910 -0.5366 35 1 7.0874 4.0433 -0.0196 36 1 8.0582 2.4420 -0.2315 37 1 8.3966 -0.1606 0.8117 38 1 8.2280 -0.2825 -0.9562 39 1 10.0959 1.3219 -1.2455 40 1 10.2650 1.4441 0.5221 41 1 13.9470 -1.2820 -0.5358 42 1 4.0093 0.3696 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342648976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:32 Heat of formation + Delta-G solvation = -20.456421 kcal Electronic energy + Delta-G solvation = -24926.205069 eV Core-core repulsion = 21257.595338 eV Total energy + Delta-G solvation = -3668.609731 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34644 -39.67145 -39.01523 -36.52568 -35.18377 -33.64396 -32.85102 -31.80298 -30.87475 -29.81795 -28.07211 -27.01907 -25.59040 -24.22171 -22.75682 -22.67877 -20.90497 -20.33412 -18.74118 -17.98400 -17.56990 -16.96907 -16.15066 -16.13786 -16.01001 -15.36241 -15.23950 -14.69237 -14.65830 -14.37353 -14.21190 -13.76017 -13.43827 -13.43111 -13.16161 -13.11065 -12.87490 -12.63981 -12.42303 -12.11134 -12.02059 -11.54915 -11.34979 -11.28224 -10.82878 -10.54008 -10.42513 -10.41741 -10.15800 -9.97517 -9.41571 -9.22104 -8.90193 -8.73532 -8.62857 -7.96122 -6.14158 -4.14858 -0.06440 0.59488 1.55276 2.57251 3.03120 3.13719 3.22623 3.27498 3.30050 3.31434 3.91010 3.92957 4.31783 4.34510 4.45231 4.49635 4.61994 4.78113 4.80424 4.85053 4.86521 5.17493 5.18321 5.18536 5.30044 5.35801 5.39797 5.47388 5.63185 5.82234 5.86416 5.89533 6.01638 6.11684 6.12736 6.38817 6.44509 6.48484 6.65978 7.04892 7.16226 7.16663 7.61350 7.68384 7.70652 8.32912 8.41626 8.89925 9.45497 10.98826 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.003095 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.415078 B = 9046.008305 C =10785.298736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.121 3.879 4 C -0.171 4.171 5 C -0.059 4.059 6 C 0.099 3.901 7 N -0.455 5.455 8 C 0.142 3.858 9 C -0.105 4.105 10 C -0.126 4.126 11 C -0.070 4.070 12 C 0.552 3.448 13 O -0.527 6.527 14 N -0.713 5.713 15 C 0.128 3.872 16 C -0.022 4.022 17 C -0.524 4.524 18 H 0.076 0.924 19 C 0.070 3.930 20 N -0.897 5.897 21 Si 0.882 3.118 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.266 1.266 25 C -0.034 4.034 26 C -0.141 4.141 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.144 0.856 36 H 0.397 0.603 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.023 0.977 40 H 0.018 0.982 41 H 0.265 0.735 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.478 14.214 0.658 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.076 3.924 4 C -0.191 4.191 5 C -0.078 4.078 6 C -0.023 4.023 7 N -0.164 5.164 8 C -0.011 4.011 9 C -0.162 4.162 10 C -0.147 4.147 11 C -0.081 4.081 12 C 0.337 3.663 13 O -0.405 6.405 14 N -0.363 5.363 15 C 0.007 3.993 16 C -0.060 4.060 17 C -0.562 4.562 18 H 0.095 0.905 19 C -0.132 4.132 20 N -0.535 5.535 21 Si 0.709 3.291 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.191 1.191 25 C -0.037 4.037 26 C -0.159 4.159 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.162 0.838 36 H 0.231 0.769 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.041 0.959 40 H 0.037 0.963 41 H 0.075 0.925 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -24.136 13.811 0.725 27.817 hybrid contribution 1.006 0.659 -0.119 1.208 sum -23.130 14.470 0.607 27.290 Atomic orbital electron populations 1.23097 0.78520 1.04191 1.01209 1.86145 1.21195 1.26480 1.88424 1.19112 0.92289 0.84139 0.96860 1.21134 1.00521 0.92101 1.05320 1.20543 0.91899 0.97674 0.97691 1.18741 0.94063 0.87617 1.01835 1.67531 1.11674 1.25947 1.11296 1.21313 0.88743 0.96063 0.95007 1.20776 1.00767 0.91216 1.03457 1.22310 1.01595 0.91856 0.98923 1.20433 0.93142 0.94050 1.00510 1.17997 0.82551 0.87957 0.77756 1.90605 1.73143 1.26896 1.49905 1.46270 1.05987 1.11924 1.72091 1.21629 0.90370 0.85257 1.02067 1.19808 0.90787 0.98528 0.96885 1.20893 0.91185 0.93082 1.51080 0.90546 1.24999 0.97134 0.96725 0.94383 1.69897 1.05043 1.28679 1.49928 0.86758 0.78949 0.84902 0.78509 1.20183 1.21235 1.19055 1.18290 0.92075 0.93885 0.99421 1.21451 0.91831 0.99807 1.02833 0.92620 0.92630 0.88064 0.84638 0.84222 0.90042 0.90227 0.90233 0.83815 0.76888 0.91453 0.91443 0.95900 0.96344 0.92492 0.80406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.80 101.05 0.99 1.16 16 2 O -0.31 -3.71 10.48 -19.22 -0.20 -3.91 16 3 C 0.12 1.55 6.68 -39.14 -0.26 1.28 16 4 C -0.17 -1.71 8.94 -39.80 -0.36 -2.07 16 5 C -0.06 -0.64 9.96 -39.46 -0.39 -1.03 16 6 C 0.10 1.32 6.61 -84.83 -0.56 0.76 16 7 N -0.45 -5.79 10.18 -7.23 -0.07 -5.86 16 8 C 0.14 1.57 6.78 -82.58 -0.56 1.01 16 9 C -0.10 -0.78 10.14 36.01 0.37 -0.41 16 10 C -0.13 -1.45 9.20 -38.95 -0.36 -1.81 16 11 C -0.07 -1.01 5.94 -104.33 -0.62 -1.63 16 12 C 0.55 9.25 7.74 -12.34 -0.10 9.15 16 13 O -0.53 -10.38 13.53 5.31 0.07 -10.31 16 14 N -0.71 -11.49 5.51 -61.26 -0.34 -11.83 16 15 C 0.13 2.54 5.61 -4.04 -0.02 2.51 16 16 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 17 C -0.52 -14.41 9.66 -34.44 -0.33 -14.74 16 18 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 21 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 25 C -0.03 -0.50 5.76 -106.53 -0.61 -1.11 16 26 C -0.14 -2.13 9.21 -39.12 -0.36 -2.49 16 27 H 0.06 0.30 7.64 -51.93 -0.40 -0.09 16 28 H 0.06 0.30 7.64 -51.93 -0.40 -0.09 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.14 0.90 6.23 -52.48 -0.33 0.58 16 31 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.14 1.25 6.56 -52.49 -0.34 0.91 16 36 H 0.40 5.21 6.65 -40.82 -0.27 4.94 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 40 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.18 3.09 4.99 -52.48 -0.26 2.83 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -33.69 351.15 -7.84 -41.53 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.31 Total: 3.54 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -3.39 Total: -8.15 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.36 Total: -43.95 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.13 Total: -14.22 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.69 -7.84 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342648976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.078 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds