Wall clock time and date at job start Tue Mar 31 2020 10:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35833 * 116.99482 * 2 1 4 4 C 1.39902 * 119.72208 * 359.97438 * 3 2 1 5 5 C 1.35891 * 120.99095 * 180.02562 * 4 3 2 6 6 C 1.40778 * 119.95872 * 0.22486 * 5 4 3 7 7 N 1.33533 * 120.84430 * 179.72531 * 6 5 4 8 8 C 1.30980 * 121.87910 * 180.02562 * 7 6 5 9 9 C 1.50702 * 119.04934 * 180.02562 * 8 7 6 10 10 C 1.39243 * 121.90709 * 359.97438 * 8 7 6 11 11 C 1.38929 * 119.55702 * 359.49632 * 10 8 7 12 12 C 1.47826 * 121.11100 * 179.97438 * 11 10 8 13 13 O 1.21558 * 119.99350 * 174.08269 * 12 11 10 14 14 N 1.34772 * 120.00412 * 354.08422 * 12 11 10 15 15 C 1.46495 * 120.00023 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47227 * 179.97438 * 15 14 12 17 17 C 1.50698 * 109.47322 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99796 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00084 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00411 * 180.02562 * 19 17 16 21 21 Si 1.86809 * 119.99944 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47136 * 90.00008 * 21 19 17 23 23 H 1.48506 * 109.46731 * 210.00223 * 21 19 17 24 24 H 1.48499 * 109.46894 * 329.99912 * 21 19 17 25 25 C 1.41735 * 119.18696 * 359.48518 * 6 5 4 26 26 C 1.37753 * 119.71527 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47447 * 299.99751 * 1 2 3 28 28 H 1.09000 * 109.47145 * 60.00561 * 1 2 3 29 29 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.50099 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.02262 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47259 * 89.99696 * 9 8 7 33 33 H 1.08998 * 109.46834 * 210.00202 * 9 8 7 34 34 H 1.08997 * 109.46793 * 329.99773 * 9 8 7 35 35 H 1.07999 * 120.22302 * 180.02562 * 10 8 7 36 36 H 0.97001 * 119.99644 * 0.02562 * 14 12 11 37 37 H 1.09000 * 109.47245 * 299.99538 * 15 14 12 38 38 H 1.09005 * 109.47365 * 60.00240 * 15 14 12 39 39 H 1.08996 * 109.47453 * 300.00496 * 16 15 14 40 40 H 1.09005 * 109.46502 * 60.00018 * 16 15 14 41 41 H 0.96993 * 120.00225 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.24675 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.2778 2.3799 -0.0005 5 6 1.8677 3.6041 -0.0011 6 6 3.2716 3.7080 -0.0059 7 7 3.8698 4.9019 -0.0120 8 6 5.1740 5.0221 -0.0170 9 6 5.7817 6.4012 -0.0232 10 6 6.0154 3.9126 -0.0158 11 6 5.4667 2.6364 0.0016 12 6 6.3276 1.4348 0.0029 13 8 5.8316 0.3319 0.1267 14 7 7.6624 1.5619 -0.1332 15 6 8.5155 0.3710 -0.1324 16 6 9.9772 0.7905 -0.3014 17 6 10.8548 -0.4345 -0.3000 18 1 10.4141 -1.4144 -0.1901 19 6 12.2203 -0.3045 -0.4390 20 7 12.9863 -1.3736 -0.4383 21 14 12.9827 1.3905 -0.6284 22 1 13.3171 1.9353 0.7119 23 1 14.2194 1.2885 -1.4442 24 1 12.0174 2.2947 -1.3036 25 6 4.0523 2.5250 0.0010 26 6 3.4216 1.2757 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2002 2.3086 -0.0005 31 1 1.2598 4.4968 -0.0019 32 1 5.9319 6.7366 1.0030 33 1 6.7407 6.3732 -0.5404 34 1 5.1120 7.0910 -0.5366 35 1 7.0874 4.0433 -0.0196 36 1 8.0582 2.4420 -0.2315 37 1 8.3966 -0.1606 0.8117 38 1 8.2280 -0.2825 -0.9562 39 1 10.0959 1.3219 -1.2455 40 1 10.2650 1.4441 0.5221 41 1 13.9470 -1.2820 -0.5358 42 1 4.0093 0.3696 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342648976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:31 Heat of formation + Delta-G solvation = -44.224916 kcal Electronic energy + Delta-G solvation = -24927.235749 eV Core-core repulsion = 21257.595338 eV Total energy + Delta-G solvation = -3669.640410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.31687 -40.72180 -40.11756 -37.41765 -36.73214 -34.95074 -34.52859 -32.58109 -32.32204 -31.08849 -28.80183 -27.71929 -27.20881 -25.39356 -23.90070 -23.55728 -22.61346 -21.62225 -19.57980 -19.02654 -18.90881 -18.63619 -17.21047 -17.11511 -16.83797 -16.63008 -16.49045 -16.21111 -15.68848 -15.64812 -15.43803 -14.91984 -14.69323 -14.51043 -14.34814 -14.16904 -13.84620 -13.63059 -13.36514 -13.06664 -12.97934 -12.80156 -12.75473 -12.25450 -12.19559 -12.07966 -11.75768 -11.68391 -11.55744 -11.41182 -11.36981 -10.78522 -10.39436 -10.21795 -9.74644 -8.91050 -8.29519 -6.37459 -1.02915 -0.30287 0.56245 1.40383 1.43519 1.54525 1.62005 1.94955 1.99329 2.27549 2.37924 2.97077 3.05696 3.12299 3.36803 3.53188 3.60272 3.74884 3.89559 4.05053 4.25687 4.30963 4.38799 4.39388 4.39579 4.43026 4.55410 4.71028 4.72255 4.80515 4.83972 4.88617 4.91388 5.05712 5.09050 5.16777 5.26890 5.38341 5.39625 5.48270 5.60961 5.61885 6.21154 6.33563 6.42042 6.70444 6.78529 7.07276 7.27252 8.87340 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.003095 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.415078 B = 9046.008305 C =10785.298736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.337 6.337 3 C 0.128 3.872 4 C -0.164 4.164 5 C -0.051 4.051 6 C 0.080 3.920 7 N -0.459 5.459 8 C 0.135 3.865 9 C -0.102 4.102 10 C -0.105 4.105 11 C -0.100 4.100 12 C 0.552 3.448 13 O -0.566 6.566 14 N -0.701 5.701 15 C 0.144 3.856 16 C -0.013 4.013 17 C -0.540 4.540 18 H 0.028 0.972 19 C 0.003 3.997 20 N -0.952 5.952 21 Si 0.959 3.041 22 H -0.264 1.264 23 H -0.288 1.288 24 H -0.232 1.232 25 C -0.048 4.048 26 C -0.186 4.186 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.176 0.824 31 H 0.170 0.830 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.175 0.825 36 H 0.415 0.585 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.268 0.732 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.891 18.865 0.472 31.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.250 6.250 3 C 0.082 3.918 4 C -0.183 4.183 5 C -0.070 4.070 6 C -0.041 4.041 7 N -0.169 5.169 8 C -0.018 4.018 9 C -0.159 4.159 10 C -0.126 4.126 11 C -0.111 4.111 12 C 0.340 3.660 13 O -0.447 6.447 14 N -0.353 5.353 15 C 0.020 3.980 16 C -0.050 4.050 17 C -0.579 4.579 18 H 0.046 0.954 19 C -0.194 4.194 20 N -0.592 5.592 21 Si 0.781 3.219 22 H -0.189 1.189 23 H -0.214 1.214 24 H -0.155 1.155 25 C -0.051 4.051 26 C -0.205 4.205 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.134 0.866 30 H 0.193 0.807 31 H 0.187 0.813 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.192 0.808 36 H 0.253 0.747 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -25.587 18.489 0.539 31.573 hybrid contribution 1.303 -0.901 -0.045 1.585 sum -24.285 17.588 0.494 29.989 Atomic orbital electron populations 1.23478 0.75771 1.05924 1.02957 1.86122 1.24153 1.26673 1.88070 1.19266 0.91800 0.85441 0.95266 1.21440 1.02180 0.90610 1.04116 1.20941 0.91106 0.98992 0.95922 1.19066 0.95217 0.87234 1.02619 1.67629 1.12590 1.25369 1.11271 1.21973 0.88325 0.97613 0.93875 1.20905 1.01578 0.88687 1.04711 1.22680 1.03252 0.90581 0.96077 1.20236 0.92911 0.93956 1.03984 1.18420 0.82600 0.88457 0.76559 1.90611 1.73851 1.28793 1.51412 1.45930 1.05556 1.11557 1.72240 1.21145 0.90077 0.86320 1.00408 1.19664 0.90603 0.96430 0.98331 1.21240 0.92401 0.93356 1.50882 0.95396 1.26111 0.97611 1.01942 0.93740 1.70078 1.05548 1.31934 1.51624 0.85535 0.78143 0.78962 0.79229 1.18871 1.21447 1.15513 1.18441 0.92513 0.94292 0.99878 1.21237 0.93174 0.99100 1.06983 0.90788 0.90778 0.86597 0.80696 0.81261 0.88648 0.88009 0.89802 0.80769 0.74748 0.93288 0.93392 0.94168 0.94215 0.92328 0.83801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.80 113.37 1.11 1.26 16 2 O -0.34 -8.15 10.48 -91.67 -0.96 -9.11 16 3 C 0.13 3.29 6.68 22.56 0.15 3.44 16 4 C -0.16 -2.93 8.94 22.13 0.20 -2.73 16 5 C -0.05 -0.98 9.96 22.35 0.22 -0.76 16 6 C 0.08 2.04 6.61 40.37 0.27 2.31 16 7 N -0.46 -10.62 10.18 -176.80 -1.80 -12.42 16 8 C 0.14 2.61 6.78 42.93 0.29 2.90 16 9 C -0.10 -1.09 10.14 71.24 0.72 -0.36 16 10 C -0.11 -2.18 9.20 22.68 0.21 -1.97 16 11 C -0.10 -2.89 5.94 -19.67 -0.12 -3.01 16 12 C 0.55 19.18 7.74 86.78 0.67 19.85 16 13 O -0.57 -24.14 13.53 -3.90 -0.05 -24.20 16 14 N -0.70 -22.37 5.51 -465.99 -2.57 -24.94 16 15 C 0.14 5.83 5.61 86.38 0.48 6.32 16 16 C -0.01 -0.54 4.16 29.85 0.12 -0.42 16 17 C -0.54 -30.59 9.66 25.60 0.25 -30.35 16 18 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 19 C 0.00 0.17 5.47 84.65 0.46 0.63 16 20 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 21 Si 0.96 41.40 27.47 68.60 1.88 43.29 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.23 -8.72 6.54 99.48 0.65 -8.07 16 25 C -0.05 -1.46 5.76 -21.10 -0.12 -1.58 16 26 C -0.19 -6.03 9.21 22.57 0.21 -5.82 16 27 H 0.07 0.61 7.64 -2.39 -0.02 0.59 16 28 H 0.07 0.61 7.64 -2.39 -0.02 0.59 16 29 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.18 1.64 6.23 -2.91 -0.02 1.62 16 31 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.66 8.07 -2.39 -0.02 0.64 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 35 H 0.18 2.36 6.56 -2.91 -0.02 2.34 16 36 H 0.41 9.89 6.65 -92.71 -0.62 9.27 16 37 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.04 1.62 7.20 -2.39 -0.02 1.61 16 40 H 0.04 1.58 7.57 -2.38 -0.02 1.56 16 41 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 42 H 0.14 5.62 4.99 -2.91 -0.01 5.61 16 Total: -1.00 -79.66 351.15 2.32 -77.33 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.39 Total: 19.27 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 5.13 Total: -10.29 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -4.07 Total: -96.29 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -1.01 Total: -33.31 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.88 Total: 43.29 kcal Total: -79.66 2.32 -77.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342648976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.109 kcal (2) G-P(sol) polarization free energy of solvation -79.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds