Wall clock time and date at job start Tue Mar 31 2020 11:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34252 * 126.53255 * 2 1 4 4 C 1.34043 * 108.23405 * 179.73728 * 3 2 1 5 5 C 1.50704 * 125.37838 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47231 * 119.99975 * 5 4 3 7 7 C 1.52996 * 109.47316 * 240.00318 * 5 4 3 8 8 N 1.29933 * 109.25482 * 0.02562 * 4 3 2 9 9 C 1.36074 * 108.47663 * 359.97438 * 8 4 3 10 10 C 1.47371 * 126.45131 * 180.02562 * 9 8 4 11 11 O 1.21626 * 119.99931 * 179.97438 * 10 9 8 12 12 N 1.34771 * 120.00159 * 359.97438 * 10 9 8 13 13 C 1.39017 * 120.00167 * 175.80084 * 12 10 9 14 14 C 1.38687 * 120.28748 * 34.57427 * 13 12 10 15 15 C 1.38193 * 120.03289 * 180.02562 * 14 13 12 16 16 C 1.38881 * 120.62255 * 0.02620 * 15 14 13 17 17 C 1.36460 * 120.57929 * 359.97438 * 16 15 14 18 18 C 1.40735 * 119.94847 * 359.68336 * 17 16 15 19 19 C 1.41051 * 120.30667 * 180.29523 * 18 17 16 20 20 H 1.07996 * 120.00339 * 215.00811 * 19 18 17 21 21 C 1.39958 * 119.99936 * 35.00890 * 19 18 17 22 22 N 1.30854 * 119.99780 * 355.64043 * 21 19 18 23 23 Si 1.86802 * 120.00107 * 175.63843 * 21 19 18 24 24 H 1.48498 * 109.46987 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46976 * 120.00092 * 23 21 19 26 26 H 1.48504 * 109.47389 * 240.00008 * 23 21 19 27 27 H 1.08991 * 109.47170 * 0.02652 * 1 2 3 28 28 H 1.09004 * 109.47025 * 120.02665 * 1 2 3 29 29 H 1.08997 * 109.47477 * 240.02189 * 1 2 3 30 30 H 1.09007 * 109.46608 * 0.02562 * 5 4 3 31 31 H 1.08993 * 109.47471 * 60.00468 * 6 5 4 32 32 H 1.09005 * 109.46971 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47171 * 300.00247 * 6 5 4 34 34 H 1.08998 * 109.47114 * 59.99927 * 7 5 4 35 35 H 1.09005 * 109.46980 * 179.97438 * 7 5 4 36 36 H 1.08999 * 109.46750 * 299.99655 * 7 5 4 37 37 H 0.97003 * 120.00147 * 355.80000 * 12 10 9 38 38 H 1.08000 * 119.98251 * 0.02805 * 14 13 12 39 39 H 1.08001 * 119.69406 * 180.02562 * 15 14 13 40 40 H 1.08002 * 119.71454 * 179.97438 * 16 15 14 41 41 H 1.08006 * 120.02470 * 179.97438 * 17 16 15 42 42 H 0.97002 * 119.99909 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3062 1.0787 0.0000 4 6 3.5788 0.6579 0.0058 5 6 4.7930 1.5506 0.0073 6 6 5.6267 1.2755 1.2604 7 6 5.6355 1.2677 -1.2380 8 7 3.6005 -0.6412 0.0089 9 6 2.3173 -1.0940 0.0056 10 6 1.8859 -2.5032 0.0080 11 8 0.7008 -2.7764 0.0050 12 7 2.8047 -3.4891 0.0134 13 6 2.3999 -4.8160 0.1037 14 6 1.2199 -5.2297 -0.4962 15 6 0.8223 -6.5498 -0.4026 16 6 1.5942 -7.4738 0.2897 17 6 2.7597 -7.0942 0.8895 18 6 3.1913 -5.7575 0.8033 19 6 4.3978 -5.3582 1.4152 20 1 4.4820 -4.3741 1.8519 21 6 5.4860 -6.2374 1.4563 22 7 5.3578 -7.4587 1.0041 23 14 7.1213 -5.6676 2.1567 24 1 7.0051 -4.2546 2.5984 25 1 7.4869 -6.5199 3.3166 26 1 8.1717 -5.7756 1.1125 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5143 -0.8898 29 1 -0.3634 -0.5135 0.8901 30 1 4.4769 2.5938 0.0034 31 1 5.9428 0.2325 1.2648 32 1 6.5047 1.9216 1.2617 33 1 5.0265 1.4771 2.1477 34 1 5.0416 1.4637 -2.1307 35 1 6.5135 1.9138 -1.2371 36 1 5.9515 0.2246 -1.2336 37 1 3.7485 -3.2730 -0.0458 38 1 0.6115 -4.5197 -1.0368 39 1 -0.0974 -6.8661 -0.8722 40 1 1.2693 -8.5018 0.3539 41 1 3.3528 -7.8201 1.4259 42 1 6.1120 -8.0679 1.0322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344394866.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:03 Heat of formation + Delta-G solvation = -8.033482 kcal Electronic energy + Delta-G solvation = -25798.341936 eV Core-core repulsion = 22130.270904 eV Total energy + Delta-G solvation = -3668.071032 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.37073 -39.38993 -37.16040 -36.08975 -34.46528 -33.74339 -33.56874 -31.87244 -29.57261 -28.68682 -27.39994 -26.91622 -25.26371 -24.22967 -22.54917 -21.37297 -20.79794 -20.13177 -19.49255 -17.74481 -17.19368 -16.87884 -16.21719 -15.65963 -15.15372 -14.94608 -14.62638 -14.34640 -14.17054 -13.75669 -13.50411 -13.43182 -12.99072 -12.86232 -12.61847 -12.52394 -12.37361 -12.25476 -11.94255 -11.73575 -11.53112 -11.26684 -11.22607 -11.16764 -11.09403 -10.87128 -10.57668 -10.42610 -10.14483 -9.75096 -9.35833 -9.19893 -8.89007 -8.67146 -7.28529 -6.92804 -6.59856 -4.41070 1.22098 2.13892 2.46789 2.76017 2.99883 3.07665 3.12690 3.22329 3.66044 3.85802 3.95007 4.05298 4.55157 4.68776 4.76779 4.79858 4.90413 5.17315 5.25633 5.42536 5.44464 5.52904 5.55976 5.62682 5.63561 5.70349 5.90680 6.02187 6.03302 6.06847 6.24194 6.34851 6.53848 6.59036 6.98510 7.09507 7.23041 7.30440 7.58826 7.69409 7.74405 8.02738 8.10806 8.17315 8.45771 8.60236 8.83791 8.88675 9.04830 10.25324 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010917 B = 0.004996 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.096500 B = 5603.246140 C = 7829.248057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.026 3.974 3 O -0.200 6.200 4 C 0.189 3.811 5 C 0.008 3.992 6 C -0.146 4.146 7 C -0.145 4.145 8 N -0.447 5.447 9 C -0.062 4.062 10 C 0.582 3.418 11 O -0.537 6.537 12 N -0.615 5.615 13 C 0.019 3.981 14 C -0.092 4.092 15 C -0.217 4.217 16 C -0.119 4.119 17 C -0.139 4.139 18 C 0.098 3.902 19 C -0.466 4.466 20 H 0.076 0.924 21 C 0.074 3.926 22 N -0.807 5.807 23 Si 0.912 3.088 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.412 0.588 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 16.196 -1.829 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.030 4.030 3 O -0.088 6.088 4 C -0.020 4.020 5 C -0.012 4.012 6 C -0.204 4.204 7 C -0.203 4.203 8 N -0.176 5.176 9 C -0.182 4.182 10 C 0.368 3.632 11 O -0.415 6.415 12 N -0.256 5.256 13 C -0.074 4.074 14 C -0.112 4.112 15 C -0.237 4.237 16 C -0.137 4.137 17 C -0.159 4.159 18 C 0.095 3.905 19 C -0.497 4.497 20 H 0.094 0.906 21 C -0.142 4.142 22 N -0.434 5.434 23 Si 0.737 3.263 24 H -0.185 1.185 25 H -0.200 1.200 26 H -0.199 1.199 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.248 0.752 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.149 0.851 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.180 15.447 -1.842 15.557 hybrid contribution 0.704 0.637 0.248 0.981 sum 0.885 16.084 -1.594 16.187 Atomic orbital electron populations 1.20395 0.82606 1.03253 1.05628 1.23665 0.94997 0.83335 1.00968 1.84288 1.18030 1.36372 1.70085 1.26181 0.83798 0.90516 1.01515 1.19639 0.86943 0.96204 0.98385 1.21872 0.99316 1.03817 0.95380 1.21863 0.99246 1.03741 0.95438 1.70721 1.21709 1.08727 1.16436 1.21700 0.88574 0.95907 1.12036 1.16736 0.85828 0.82317 0.78272 1.90743 1.16291 1.82826 1.51680 1.42653 1.10151 1.04464 1.68318 1.17858 1.00273 0.83078 1.06224 1.20656 0.96064 0.95310 0.99145 1.20356 1.01233 0.93539 1.08558 1.20551 0.96166 0.97310 0.99717 1.21175 0.95213 0.97001 1.02542 1.17475 0.92066 0.91331 0.89675 1.19363 0.95907 1.00883 1.33519 0.90619 1.25850 1.00935 0.94196 0.93218 1.69776 1.32290 1.05083 1.36281 0.86194 0.81057 0.80002 0.79078 1.18480 1.19983 1.19903 0.90764 0.88364 0.88302 0.88650 0.90753 0.91028 0.92262 0.92309 0.91028 0.90805 0.75176 0.87187 0.89122 0.89283 0.85142 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 9.13 36.01 0.33 -0.42 16 2 C 0.03 0.40 7.44 -35.06 -0.26 0.14 16 3 O -0.20 -2.82 10.72 6.54 0.07 -2.75 16 4 C 0.19 2.62 6.81 -13.08 -0.09 2.53 16 5 C 0.01 0.08 3.39 -91.77 -0.31 -0.24 16 6 C -0.15 -1.35 9.17 37.16 0.34 -1.01 16 7 C -0.15 -1.28 9.17 37.16 0.34 -0.94 16 8 N -0.45 -7.54 11.06 -7.66 -0.08 -7.63 16 9 C -0.06 -1.12 6.99 -83.02 -0.58 -1.70 16 10 C 0.58 12.29 7.65 -12.55 -0.10 12.19 16 11 O -0.54 -11.95 13.02 5.25 0.07 -11.89 16 12 N -0.62 -13.88 4.95 -10.46 -0.05 -13.93 16 13 C 0.02 0.49 6.34 -83.20 -0.53 -0.04 16 14 C -0.09 -2.24 8.68 -39.43 -0.34 -2.58 16 15 C -0.22 -5.09 10.04 -39.36 -0.39 -5.49 16 16 C -0.12 -2.84 9.97 -39.98 -0.40 -3.24 16 17 C -0.14 -3.64 8.61 -39.28 -0.34 -3.98 16 18 C 0.10 2.61 5.56 -106.65 -0.59 2.02 16 19 C -0.47 -12.14 8.22 -37.87 -0.31 -12.45 16 20 H 0.08 1.94 7.63 -52.49 -0.40 1.54 16 21 C 0.07 1.83 5.42 -17.32 -0.09 1.74 16 22 N -0.81 -20.64 10.62 55.55 0.59 -20.05 16 23 Si 0.91 18.72 29.56 -169.99 -5.03 13.70 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.10 1.18 8.08 -51.93 -0.42 0.77 16 29 H 0.10 1.23 8.07 -51.93 -0.42 0.81 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.41 8.99 7.83 -40.82 -0.32 8.67 16 38 H 0.11 2.62 6.19 -52.49 -0.33 2.30 16 39 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 40 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.13 3.50 6.16 -52.48 -0.32 3.18 16 42 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -29.92 357.36 -7.94 -37.86 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -5.57 Total: 12.77 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.33 Total: -13.46 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.45 Total: -41.61 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.14 Total: -14.64 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.92 -7.94 -37.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344394866.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.829 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds