Wall clock time and date at job start Tue Mar 31 2020 11:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34252 * 126.53255 * 2 1 4 4 C 1.34043 * 108.23405 * 179.73728 * 3 2 1 5 5 C 1.50704 * 125.37838 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47231 * 119.99975 * 5 4 3 7 7 C 1.52996 * 109.47316 * 240.00318 * 5 4 3 8 8 N 1.29933 * 109.25482 * 0.02562 * 4 3 2 9 9 C 1.36074 * 108.47663 * 359.97438 * 8 4 3 10 10 C 1.47371 * 126.45131 * 180.02562 * 9 8 4 11 11 O 1.21626 * 119.99931 * 179.97438 * 10 9 8 12 12 N 1.34771 * 120.00159 * 359.97438 * 10 9 8 13 13 C 1.39017 * 120.00167 * 175.80084 * 12 10 9 14 14 C 1.38687 * 120.28748 * 34.57427 * 13 12 10 15 15 C 1.38193 * 120.03289 * 180.02562 * 14 13 12 16 16 C 1.38881 * 120.62255 * 0.02620 * 15 14 13 17 17 C 1.36460 * 120.57929 * 359.97438 * 16 15 14 18 18 C 1.40735 * 119.94847 * 359.68336 * 17 16 15 19 19 C 1.41051 * 120.30667 * 180.29523 * 18 17 16 20 20 H 1.07996 * 120.00339 * 215.00811 * 19 18 17 21 21 C 1.39958 * 119.99936 * 35.00890 * 19 18 17 22 22 N 1.30854 * 119.99780 * 355.64043 * 21 19 18 23 23 Si 1.86802 * 120.00107 * 175.63843 * 21 19 18 24 24 H 1.48498 * 109.46987 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46976 * 120.00092 * 23 21 19 26 26 H 1.48504 * 109.47389 * 240.00008 * 23 21 19 27 27 H 1.08991 * 109.47170 * 0.02652 * 1 2 3 28 28 H 1.09004 * 109.47025 * 120.02665 * 1 2 3 29 29 H 1.08997 * 109.47477 * 240.02189 * 1 2 3 30 30 H 1.09007 * 109.46608 * 0.02562 * 5 4 3 31 31 H 1.08993 * 109.47471 * 60.00468 * 6 5 4 32 32 H 1.09005 * 109.46971 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47171 * 300.00247 * 6 5 4 34 34 H 1.08998 * 109.47114 * 59.99927 * 7 5 4 35 35 H 1.09005 * 109.46980 * 179.97438 * 7 5 4 36 36 H 1.08999 * 109.46750 * 299.99655 * 7 5 4 37 37 H 0.97003 * 120.00147 * 355.80000 * 12 10 9 38 38 H 1.08000 * 119.98251 * 0.02805 * 14 13 12 39 39 H 1.08001 * 119.69406 * 180.02562 * 15 14 13 40 40 H 1.08002 * 119.71454 * 179.97438 * 16 15 14 41 41 H 1.08006 * 120.02470 * 179.97438 * 17 16 15 42 42 H 0.97002 * 119.99909 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3062 1.0787 0.0000 4 6 3.5788 0.6579 0.0058 5 6 4.7930 1.5506 0.0073 6 6 5.6267 1.2755 1.2604 7 6 5.6355 1.2677 -1.2380 8 7 3.6005 -0.6412 0.0089 9 6 2.3173 -1.0940 0.0056 10 6 1.8859 -2.5032 0.0080 11 8 0.7008 -2.7764 0.0050 12 7 2.8047 -3.4891 0.0134 13 6 2.3999 -4.8160 0.1037 14 6 1.2199 -5.2297 -0.4962 15 6 0.8223 -6.5498 -0.4026 16 6 1.5942 -7.4738 0.2897 17 6 2.7597 -7.0942 0.8895 18 6 3.1913 -5.7575 0.8033 19 6 4.3978 -5.3582 1.4152 20 1 4.4820 -4.3741 1.8519 21 6 5.4860 -6.2374 1.4563 22 7 5.3578 -7.4587 1.0041 23 14 7.1213 -5.6676 2.1567 24 1 7.0051 -4.2546 2.5984 25 1 7.4869 -6.5199 3.3166 26 1 8.1717 -5.7756 1.1125 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5143 -0.8898 29 1 -0.3634 -0.5135 0.8901 30 1 4.4769 2.5938 0.0034 31 1 5.9428 0.2325 1.2648 32 1 6.5047 1.9216 1.2617 33 1 5.0265 1.4771 2.1477 34 1 5.0416 1.4637 -2.1307 35 1 6.5135 1.9138 -1.2371 36 1 5.9515 0.2246 -1.2336 37 1 3.7485 -3.2730 -0.0458 38 1 0.6115 -4.5197 -1.0368 39 1 -0.0974 -6.8661 -0.8722 40 1 1.2693 -8.5018 0.3539 41 1 3.3528 -7.8201 1.4259 42 1 6.1120 -8.0679 1.0322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344394866.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:00 Heat of formation + Delta-G solvation = -26.521750 kcal Electronic energy + Delta-G solvation = -25799.143647 eV Core-core repulsion = 22130.270904 eV Total energy + Delta-G solvation = -3668.872743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -44.55785 -41.13075 -38.99344 -36.97284 -35.73688 -35.53906 -35.37743 -32.95863 -31.50985 -30.49133 -28.17106 -28.10308 -27.10751 -25.53736 -23.88426 -23.07170 -22.31323 -21.39945 -21.05694 -19.37085 -18.95521 -18.06200 -17.98253 -17.06700 -16.82999 -16.10999 -16.03419 -15.85382 -15.50551 -15.28748 -14.78957 -14.62844 -14.41087 -14.31429 -14.16077 -13.78945 -13.62989 -13.43728 -13.10219 -13.05024 -12.85882 -12.78823 -12.69354 -12.42765 -12.15831 -12.12228 -12.05733 -12.03043 -11.71878 -11.61537 -11.14552 -11.04368 -10.71457 -9.89401 -9.25221 -8.82624 -8.48126 -6.39139 -0.05270 0.74162 1.00290 1.16770 1.36606 1.38014 1.48137 1.53176 2.16866 2.21652 2.31274 2.77131 2.83137 3.50422 3.64827 3.72968 3.92437 4.05781 4.07250 4.29048 4.39072 4.50172 4.55634 4.61686 4.74438 4.76977 4.78450 4.88174 4.90718 4.94236 5.05607 5.08523 5.12057 5.18959 5.30993 5.31551 5.37847 5.41779 5.76032 5.83867 6.08262 6.15350 6.24269 6.41412 6.63546 6.70708 6.92292 6.97327 7.24487 8.39343 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010917 B = 0.004996 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.096500 B = 5603.246140 C = 7829.248057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.046 3.954 3 O -0.192 6.192 4 C 0.200 3.800 5 C 0.007 3.993 6 C -0.144 4.144 7 C -0.142 4.142 8 N -0.478 5.478 9 C -0.102 4.102 10 C 0.583 3.417 11 O -0.553 6.553 12 N -0.622 5.622 13 C 0.011 3.989 14 C -0.104 4.104 15 C -0.214 4.214 16 C -0.121 4.121 17 C -0.161 4.161 18 C 0.068 3.932 19 C -0.490 4.490 20 H 0.068 0.932 21 C 0.034 3.966 22 N -0.834 5.834 23 Si 0.982 3.018 24 H -0.261 1.261 25 H -0.266 1.266 26 H -0.265 1.265 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.129 0.871 31 H 0.047 0.953 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.048 0.952 37 H 0.411 0.589 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.757 18.571 -1.950 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.011 4.011 3 O -0.080 6.080 4 C -0.010 4.010 5 C -0.012 4.012 6 C -0.201 4.201 7 C -0.200 4.200 8 N -0.207 5.207 9 C -0.221 4.221 10 C 0.372 3.628 11 O -0.434 6.434 12 N -0.263 5.263 13 C -0.083 4.083 14 C -0.124 4.124 15 C -0.234 4.234 16 C -0.140 4.140 17 C -0.181 4.181 18 C 0.065 3.935 19 C -0.520 4.520 20 H 0.087 0.913 21 C -0.179 4.179 22 N -0.462 5.462 23 Si 0.804 3.196 24 H -0.185 1.185 25 H -0.190 1.190 26 H -0.190 1.190 27 H 0.129 0.871 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.147 0.853 31 H 0.066 0.934 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.247 0.753 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.621 17.816 -1.969 17.935 hybrid contribution 0.495 -0.025 0.247 0.554 sum 1.116 17.791 -1.722 17.909 Atomic orbital electron populations 1.20549 0.80376 1.05626 1.05287 1.24146 0.96137 0.82730 0.98078 1.84342 1.18102 1.35643 1.69876 1.27167 0.84667 0.90229 0.98913 1.20019 0.85295 0.96987 0.98879 1.21876 1.00372 1.02874 0.95023 1.21865 1.00231 1.02924 0.94970 1.70676 1.21407 1.10450 1.18158 1.21371 0.90050 0.94875 1.15825 1.17095 0.85380 0.83326 0.77028 1.90702 1.16781 1.83539 1.52328 1.42664 1.10429 1.04045 1.69129 1.18062 1.00350 0.84140 1.05768 1.20843 0.96059 0.96046 0.99437 1.20713 1.02007 0.92953 1.07698 1.20820 0.95344 0.98835 0.98958 1.21186 0.96274 0.96857 1.03785 1.17801 0.92932 0.92111 0.90697 1.19461 0.96750 1.01071 1.34753 0.91347 1.26667 1.04043 0.94047 0.93113 1.69835 1.33652 1.05995 1.36699 0.85142 0.76491 0.79411 0.78597 1.18485 1.19036 1.18961 0.87061 0.88354 0.88736 0.85303 0.93394 0.87882 0.92544 0.92304 0.87959 0.93243 0.75254 0.86856 0.86056 0.86539 0.86478 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.39 9.13 71.24 0.65 -0.74 16 2 C 0.05 1.36 7.44 25.20 0.19 1.55 16 3 O -0.19 -5.03 10.72 0.50 0.01 -5.03 16 4 C 0.20 5.30 6.81 88.39 0.60 5.91 16 5 C 0.01 0.12 3.39 -11.54 -0.04 0.09 16 6 C -0.14 -2.37 9.17 71.98 0.66 -1.71 16 7 C -0.14 -2.21 9.17 71.98 0.66 -1.55 16 8 N -0.48 -16.31 11.06 -293.05 -3.24 -19.55 16 9 C -0.10 -3.76 6.99 40.40 0.28 -3.47 16 10 C 0.58 25.38 7.65 86.65 0.66 26.04 16 11 O -0.55 -25.16 13.02 -4.11 -0.05 -25.21 16 12 N -0.62 -29.30 4.95 -305.25 -1.51 -30.82 16 13 C 0.01 0.58 6.34 38.91 0.25 0.82 16 14 C -0.10 -5.14 8.68 22.37 0.19 -4.95 16 15 C -0.21 -9.94 10.04 22.41 0.22 -9.72 16 16 C -0.12 -5.79 9.97 22.01 0.22 -5.57 16 17 C -0.16 -8.66 8.61 22.46 0.19 -8.47 16 18 C 0.07 3.77 5.56 -21.18 -0.12 3.65 16 19 C -0.49 -26.54 8.22 23.38 0.19 -26.35 16 20 H 0.07 3.67 7.63 -2.91 -0.02 3.65 16 21 C 0.03 1.74 5.42 85.26 0.46 2.20 16 22 N -0.83 -43.61 10.62 21.83 0.23 -43.38 16 23 Si 0.98 38.84 29.56 68.60 2.03 40.87 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 25 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 26 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 27 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.10 2.25 8.08 -2.39 -0.02 2.23 16 29 H 0.09 2.25 8.07 -2.39 -0.02 2.23 16 30 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.41 19.01 7.83 -92.71 -0.73 18.28 16 38 H 0.11 5.47 6.19 -2.91 -0.02 5.45 16 39 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 40 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 41 H 0.12 6.53 6.16 -2.91 -0.02 6.51 16 42 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 Total: -1.00 -67.10 357.36 3.07 -64.03 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: 0.33 Total: 41.34 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 5.28 Total: -22.26 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -4.52 Total: -93.75 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.05 Total: -30.24 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -67.10 3.07 -64.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344394866.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.509 kcal (2) G-P(sol) polarization free energy of solvation -67.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds