Wall clock time and date at job start Tue Mar 31 2020 11:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41380 * 126.80369 * 2 1 4 4 C 1.35445 * 103.98418 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.77909 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47279 * 89.99703 * 5 4 3 7 7 C 1.34781 * 120.00263 * 180.02562 * 6 5 4 8 8 O 1.21275 * 119.99715 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00103 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.46629 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47442 * 54.06116 * 10 9 7 12 12 C 1.50700 * 109.47616 * 294.05384 * 10 9 7 13 13 H 1.08004 * 119.99702 * 330.31700 * 12 10 9 14 14 C 1.37871 * 120.00278 * 150.30886 * 12 10 9 15 15 N 1.31520 * 119.99865 * 6.29736 * 14 12 10 16 16 Si 1.86797 * 120.00267 * 186.57175 * 14 12 10 17 17 H 1.48497 * 109.47344 * 179.72566 * 16 14 12 18 18 H 1.48505 * 109.46982 * 299.72655 * 16 14 12 19 19 H 1.48496 * 109.47263 * 59.72097 * 16 14 12 20 20 C 1.50703 * 109.46564 * 174.05717 * 10 9 7 21 21 C 1.38234 * 120.00036 * 64.22663 * 20 10 9 22 22 C 1.38241 * 119.99515 * 179.78899 * 21 20 10 23 23 C 1.38231 * 120.00410 * 0.43243 * 22 21 20 24 24 C 1.38237 * 119.99893 * 359.81688 * 23 22 21 25 25 C 1.38237 * 119.99806 * 244.49330 * 20 10 9 26 26 O 1.34047 * 106.44613 * 0.23939 * 4 3 2 27 27 N 1.20913 * 111.56731 * 359.56629 * 26 4 3 28 28 H 1.08996 * 109.47235 * 89.99327 * 1 2 3 29 29 H 1.09002 * 109.47664 * 210.00086 * 1 2 3 30 30 H 1.09001 * 109.46634 * 329.99674 * 1 2 3 31 31 H 1.07998 * 128.00585 * 0.04493 * 3 2 1 32 32 H 1.09001 * 109.46651 * 329.99981 * 5 4 3 33 33 H 1.09000 * 109.47215 * 210.00153 * 5 4 3 34 34 H 0.96999 * 120.00038 * 0.02562 * 6 5 4 35 35 H 1.09001 * 109.47147 * 60.00090 * 9 7 6 36 36 H 1.09000 * 109.46973 * 300.00105 * 9 7 6 37 37 H 0.96993 * 119.99759 * 355.06547 * 15 14 12 38 38 H 1.07994 * 120.00247 * 359.97438 * 21 20 10 39 39 H 1.08002 * 119.99674 * 180.27316 * 22 21 20 40 40 H 1.07998 * 120.00285 * 179.83231 * 23 22 21 41 41 H 1.08003 * 120.00306 * 179.97438 * 24 23 22 42 42 H 1.08006 * 120.00144 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6067 -0.0006 5 6 4.9023 1.3694 -0.0014 6 7 5.3242 1.6168 1.3795 7 6 6.4669 2.2878 1.6251 8 8 7.1462 2.6865 0.7029 9 6 6.9012 2.5418 3.0456 10 6 8.2208 3.3162 3.0447 11 1 8.1126 4.2178 2.4418 12 6 9.3103 2.4516 2.4646 13 1 9.2609 1.3778 2.5695 14 6 10.3699 3.0313 1.7998 15 7 10.4958 4.3403 1.7783 16 14 11.6225 1.9580 0.9233 17 1 12.6512 2.8181 0.2852 18 1 12.2731 1.0538 1.9054 19 1 10.9391 1.1488 -0.1174 20 6 8.5806 3.6970 4.4577 21 6 8.8561 2.7140 5.3897 22 6 9.1904 3.0636 6.6847 23 6 9.2404 4.3958 7.0500 24 6 8.9598 5.3787 6.1194 25 6 8.6296 5.0293 4.8233 26 8 3.4536 -0.7255 -0.0063 27 7 2.2868 -1.0424 -0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 2.0710 2.1743 0.0007 32 1 4.7649 2.3208 -0.5153 33 1 5.6657 0.7856 -0.5156 34 1 4.7811 1.2976 2.1171 35 1 7.0391 1.5902 3.5591 36 1 6.1375 3.1250 3.5603 37 1 9.8064 4.9003 2.1679 38 1 8.8132 1.6730 5.1053 39 1 9.4101 2.2957 7.4117 40 1 9.4990 4.6688 8.0624 41 1 8.9984 6.4196 6.4049 42 1 8.4105 5.7972 4.0961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355118901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:02 Heat of formation + Delta-G solvation = 40.254639 kcal Electronic energy + Delta-G solvation = -25038.738438 eV Core-core repulsion = 21372.761336 eV Total energy + Delta-G solvation = -3665.977102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -45.14997 -39.28905 -38.33277 -35.31265 -34.93928 -34.16668 -32.03044 -31.27559 -30.12379 -29.10855 -28.96422 -26.80841 -24.70100 -23.30660 -22.84191 -21.69422 -20.47786 -20.39558 -19.56446 -17.80740 -17.65190 -16.87659 -16.34969 -15.91545 -15.51888 -15.11703 -14.68662 -14.24442 -14.12621 -13.78402 -13.68754 -13.64896 -13.33102 -13.21450 -13.06345 -12.67123 -12.49142 -12.36590 -12.20861 -11.87928 -11.50856 -11.34981 -10.96056 -10.70800 -10.44888 -10.27506 -10.16117 -10.04494 -9.88857 -9.67271 -9.09514 -8.84384 -8.63602 -8.27947 -8.15299 -7.65155 -6.24475 -3.92556 1.12862 1.94576 2.17656 2.23385 2.80105 3.34513 3.50474 3.55971 3.64326 3.71200 3.92225 4.15968 4.59849 4.66000 4.75124 4.90399 5.04187 5.13520 5.27774 5.35768 5.44438 5.52876 5.58537 5.61240 5.62265 5.73697 5.75168 5.83398 5.96049 6.04224 6.14368 6.30091 6.40001 6.59578 6.65848 6.77076 6.91284 7.17613 7.21153 7.36084 7.69923 7.83310 7.85617 8.02389 8.20597 8.49411 8.85882 8.96720 9.76873 11.15890 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013251 B = 0.003323 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.486948 B = 8424.358685 C = 9814.976357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.215 4.215 4 C -0.037 4.037 5 C 0.203 3.797 6 N -0.747 5.747 7 C 0.517 3.483 8 O -0.494 6.494 9 C -0.116 4.116 10 C 0.072 3.928 11 H 0.052 0.948 12 C -0.570 4.570 13 H 0.046 0.954 14 C 0.033 3.967 15 N -0.905 5.905 16 Si 1.062 2.938 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.288 1.288 20 C -0.031 4.031 21 C -0.108 4.108 22 C -0.129 4.129 23 C -0.153 4.153 24 C -0.124 4.124 25 C -0.130 4.130 26 O 0.106 5.894 27 N -0.363 5.363 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.397 0.603 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.270 0.730 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.826 -4.147 1.743 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.148 4.148 3 C -0.237 4.237 4 C -0.101 4.101 5 C 0.078 3.922 6 N -0.405 5.405 7 C 0.304 3.696 8 O -0.365 6.365 9 C -0.156 4.156 10 C 0.053 3.947 11 H 0.070 0.930 12 C -0.607 4.607 13 H 0.064 0.936 14 C -0.173 4.173 15 N -0.540 5.540 16 Si 0.891 3.109 17 H -0.210 1.210 18 H -0.218 1.218 19 H -0.215 1.215 20 C -0.032 4.032 21 C -0.126 4.126 22 C -0.148 4.148 23 C -0.171 4.171 24 C -0.143 4.143 25 C -0.148 4.148 26 O 0.039 5.961 27 N -0.067 5.067 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.191 0.809 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.230 0.770 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.077 -5.102 0.172 15.918 hybrid contribution -1.716 0.547 1.235 2.183 sum -16.793 -4.556 1.406 17.456 Atomic orbital electron populations 1.20164 0.85854 1.03826 1.03395 1.23650 0.99137 0.88837 1.03154 1.22527 0.91044 1.01334 1.08810 1.24581 0.98292 0.83805 1.03398 1.19528 0.88309 0.97935 0.86437 1.46240 1.26407 1.61379 1.06483 1.20927 0.78807 0.76944 0.92915 1.90769 1.51374 1.48345 1.45969 1.21698 0.99985 1.02233 0.91706 1.17869 0.91215 0.97090 0.88499 0.93035 1.21538 1.08596 0.93014 1.37590 0.93592 1.25583 0.98990 0.97665 0.95053 1.70767 1.34713 1.04127 1.44423 0.83644 0.75843 0.74930 0.76437 1.20957 1.21759 1.21450 1.20815 0.93570 0.92088 0.96728 1.20924 0.99783 0.99550 0.92372 1.21017 1.01418 0.95745 0.96577 1.20826 1.04178 0.93346 0.98748 1.20969 1.00947 0.98322 0.94024 1.21069 1.01863 0.96372 0.95512 1.84864 1.21468 1.22778 1.67027 1.73875 0.89383 1.24216 1.19254 0.90156 0.90552 0.89944 0.80853 0.88328 0.89198 0.76999 0.90061 0.91483 0.91872 0.86712 0.87446 0.87586 0.87458 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.47 36.01 0.38 -0.12 16 2 C 0.01 0.11 7.33 -82.10 -0.60 -0.49 16 3 C -0.21 -2.07 11.06 -39.38 -0.44 -2.50 16 4 C -0.04 -0.41 6.86 -35.30 -0.24 -0.65 16 5 C 0.20 2.48 6.24 -5.19 -0.03 2.45 16 6 N -0.75 -10.23 5.55 -61.47 -0.34 -10.57 16 7 C 0.52 9.64 7.58 -10.98 -0.08 9.56 16 8 O -0.49 -11.64 15.01 5.56 0.08 -11.56 16 9 C -0.12 -2.14 4.94 -27.88 -0.14 -2.28 16 10 C 0.07 1.68 1.31 -92.92 -0.12 1.56 16 11 H 0.05 1.34 6.24 -51.93 -0.32 1.02 16 12 C -0.57 -15.18 6.40 -34.44 -0.22 -15.40 16 13 H 0.05 1.23 7.82 -52.48 -0.41 0.82 16 14 C 0.03 0.93 5.45 -17.82 -0.10 0.83 16 15 N -0.90 -27.22 13.63 55.43 0.76 -26.47 16 16 Si 1.06 25.97 29.91 -169.99 -5.08 20.89 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 C -0.03 -0.68 4.77 -104.62 -0.50 -1.18 16 21 C -0.11 -2.17 8.88 -39.58 -0.35 -2.52 16 22 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 23 C -0.15 -2.62 10.05 -39.58 -0.40 -3.01 16 24 C -0.12 -2.25 10.05 -39.58 -0.40 -2.65 16 25 C -0.13 -2.66 9.67 -39.58 -0.38 -3.05 16 26 O 0.11 1.36 11.20 17.16 0.19 1.55 16 27 N -0.36 -4.64 12.07 33.42 0.40 -4.24 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.40 4.44 8.46 -40.82 -0.35 4.10 16 35 H 0.08 1.41 7.86 -51.93 -0.41 1.00 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.27 8.00 6.68 -40.82 -0.27 7.73 16 38 H 0.11 2.24 7.80 -52.49 -0.41 1.83 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.11 2.22 7.95 -52.48 -0.42 1.81 16 LS Contribution 363.67 15.07 5.48 5.48 Total: -1.00 -33.56 363.67 -8.14 -41.70 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.61 Total: 5.37 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -4.02 Total: -22.16 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.82 Total: -41.28 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.28 Total: -10.01 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.08 Total: 20.89 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.56 -8.14 -41.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355118901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.957 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds