Wall clock time and date at job start Tue Mar 31 2020 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41380 * 126.80369 * 2 1 4 4 C 1.35445 * 103.98418 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.77909 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47279 * 89.99703 * 5 4 3 7 7 C 1.34781 * 120.00263 * 180.02562 * 6 5 4 8 8 O 1.21275 * 119.99715 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00103 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.46629 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47442 * 54.06116 * 10 9 7 12 12 C 1.50700 * 109.47616 * 294.05384 * 10 9 7 13 13 H 1.08004 * 119.99702 * 330.31700 * 12 10 9 14 14 C 1.37871 * 120.00278 * 150.30886 * 12 10 9 15 15 N 1.31520 * 119.99865 * 6.29736 * 14 12 10 16 16 Si 1.86797 * 120.00267 * 186.57175 * 14 12 10 17 17 H 1.48497 * 109.47344 * 179.72566 * 16 14 12 18 18 H 1.48505 * 109.46982 * 299.72655 * 16 14 12 19 19 H 1.48496 * 109.47263 * 59.72097 * 16 14 12 20 20 C 1.50703 * 109.46564 * 174.05717 * 10 9 7 21 21 C 1.38234 * 120.00036 * 64.22663 * 20 10 9 22 22 C 1.38241 * 119.99515 * 179.78899 * 21 20 10 23 23 C 1.38231 * 120.00410 * 0.43243 * 22 21 20 24 24 C 1.38237 * 119.99893 * 359.81688 * 23 22 21 25 25 C 1.38237 * 119.99806 * 244.49330 * 20 10 9 26 26 O 1.34047 * 106.44613 * 0.23939 * 4 3 2 27 27 N 1.20913 * 111.56731 * 359.56629 * 26 4 3 28 28 H 1.08996 * 109.47235 * 89.99327 * 1 2 3 29 29 H 1.09002 * 109.47664 * 210.00086 * 1 2 3 30 30 H 1.09001 * 109.46634 * 329.99674 * 1 2 3 31 31 H 1.07998 * 128.00585 * 0.04493 * 3 2 1 32 32 H 1.09001 * 109.46651 * 329.99981 * 5 4 3 33 33 H 1.09000 * 109.47215 * 210.00153 * 5 4 3 34 34 H 0.96999 * 120.00038 * 0.02562 * 6 5 4 35 35 H 1.09001 * 109.47147 * 60.00090 * 9 7 6 36 36 H 1.09000 * 109.46973 * 300.00105 * 9 7 6 37 37 H 0.96993 * 119.99759 * 355.06547 * 15 14 12 38 38 H 1.07994 * 120.00247 * 359.97438 * 21 20 10 39 39 H 1.08002 * 119.99674 * 180.27316 * 22 21 20 40 40 H 1.07998 * 120.00285 * 179.83231 * 23 22 21 41 41 H 1.08003 * 120.00306 * 179.97438 * 24 23 22 42 42 H 1.08006 * 120.00144 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6067 -0.0006 5 6 4.9023 1.3694 -0.0014 6 7 5.3242 1.6168 1.3795 7 6 6.4669 2.2878 1.6251 8 8 7.1462 2.6865 0.7029 9 6 6.9012 2.5418 3.0456 10 6 8.2208 3.3162 3.0447 11 1 8.1126 4.2178 2.4418 12 6 9.3103 2.4516 2.4646 13 1 9.2609 1.3778 2.5695 14 6 10.3699 3.0313 1.7998 15 7 10.4958 4.3403 1.7783 16 14 11.6225 1.9580 0.9233 17 1 12.6512 2.8181 0.2852 18 1 12.2731 1.0538 1.9054 19 1 10.9391 1.1488 -0.1174 20 6 8.5806 3.6970 4.4577 21 6 8.8561 2.7140 5.3897 22 6 9.1904 3.0636 6.6847 23 6 9.2404 4.3958 7.0500 24 6 8.9598 5.3787 6.1194 25 6 8.6296 5.0293 4.8233 26 8 3.4536 -0.7255 -0.0063 27 7 2.2868 -1.0424 -0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 2.0710 2.1743 0.0007 32 1 4.7649 2.3208 -0.5153 33 1 5.6657 0.7856 -0.5156 34 1 4.7811 1.2976 2.1171 35 1 7.0391 1.5902 3.5591 36 1 6.1375 3.1250 3.5603 37 1 9.8064 4.9003 2.1679 38 1 8.8132 1.6730 5.1053 39 1 9.4101 2.2957 7.4117 40 1 9.4990 4.6688 8.0624 41 1 8.9984 6.4196 6.4049 42 1 8.4105 5.7972 4.0961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355118901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:01 Heat of formation + Delta-G solvation = 19.700509 kcal Electronic energy + Delta-G solvation = -25039.629732 eV Core-core repulsion = 21372.761336 eV Total energy + Delta-G solvation = -3666.868396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.00822 -40.80510 -39.81395 -36.59884 -35.91811 -35.71719 -33.42273 -32.85538 -31.59127 -30.53899 -29.60081 -28.09802 -26.46808 -24.56145 -24.09745 -23.18661 -21.87578 -21.43528 -21.03313 -18.93002 -18.72084 -18.45604 -17.81154 -17.20978 -16.84781 -16.54718 -15.90234 -15.63283 -15.62545 -15.36772 -14.98366 -14.63574 -14.36823 -14.19751 -14.04785 -14.03108 -13.97659 -13.72014 -13.44743 -13.24576 -13.10997 -12.67714 -12.57412 -12.16416 -12.06227 -11.93280 -11.70888 -11.46555 -11.06711 -10.97894 -10.62987 -10.50539 -10.27212 -10.11752 -9.62658 -9.25577 -8.42339 -6.08522 0.23512 0.69271 0.75477 1.16715 1.50782 1.60997 1.76067 1.84844 1.88981 2.44606 2.63286 3.12105 3.21974 3.32759 3.40825 3.93398 3.99982 4.14510 4.15642 4.29152 4.31460 4.32192 4.45746 4.50241 4.56075 4.57156 4.66290 4.69054 4.84747 4.86649 4.88015 4.88558 5.10860 5.22308 5.24951 5.37727 5.42310 5.45572 5.76152 5.83922 5.96562 6.26080 6.32767 6.41555 6.59631 6.81487 7.17099 7.43810 7.66961 8.98280 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013251 B = 0.003323 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.486948 B = 8424.358685 C = 9814.976357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.013 3.987 3 C -0.200 4.200 4 C -0.045 4.045 5 C 0.206 3.794 6 N -0.725 5.725 7 C 0.519 3.481 8 O -0.552 6.552 9 C -0.112 4.112 10 C 0.074 3.926 11 H 0.011 0.989 12 C -0.560 4.560 13 H 0.039 0.961 14 C -0.023 4.023 15 N -0.941 5.941 16 Si 1.097 2.903 17 H -0.290 1.290 18 H -0.270 1.270 19 H -0.284 1.284 20 C -0.055 4.055 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.145 4.145 24 C -0.125 4.125 25 C -0.152 4.152 26 O 0.082 5.918 27 N -0.392 5.392 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.202 0.798 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.412 0.588 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.259 0.741 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.135 0.865 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.478 -4.684 3.897 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 C -0.222 4.222 4 C -0.108 4.108 5 C 0.082 3.918 6 N -0.382 5.382 7 C 0.306 3.694 8 O -0.428 6.428 9 C -0.152 4.152 10 C 0.055 3.945 11 H 0.029 0.971 12 C -0.598 4.598 13 H 0.058 0.942 14 C -0.221 4.221 15 N -0.580 5.580 16 Si 0.922 3.078 17 H -0.215 1.215 18 H -0.196 1.196 19 H -0.210 1.210 20 C -0.055 4.055 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.163 4.163 24 C -0.143 4.143 25 C -0.170 4.170 26 O 0.018 5.982 27 N -0.100 5.100 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.219 0.781 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.248 0.752 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.132 0.868 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.153 0.847 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.768 -5.680 2.362 17.860 hybrid contribution -1.367 0.707 0.647 1.670 sum -18.135 -4.973 3.009 19.044 Atomic orbital electron populations 1.20357 0.83297 1.05040 1.04611 1.24303 1.00745 0.88318 1.01237 1.22893 0.90010 1.02474 1.06795 1.24376 0.98183 0.83555 1.04725 1.19484 0.88728 0.98409 0.85182 1.45929 1.24883 1.59407 1.07978 1.20938 0.79397 0.76703 0.92330 1.90754 1.53618 1.51089 1.47349 1.21594 0.98598 1.02674 0.92298 1.17699 0.92491 0.95337 0.89006 0.97061 1.21814 1.08691 0.92979 1.36276 0.94242 1.26679 1.01344 0.98022 0.96093 1.70853 1.35220 1.04959 1.46953 0.83183 0.74347 0.74068 0.76179 1.21540 1.19558 1.20984 1.20629 0.95563 0.93170 0.96174 1.21015 1.00712 0.99081 0.93400 1.21402 0.99766 0.97161 0.96017 1.21300 1.02089 0.92707 1.00228 1.21305 0.99772 1.00299 0.92952 1.21141 1.03263 0.95798 0.96838 1.84834 1.21852 1.23464 1.68038 1.73888 0.89616 1.25541 1.20916 0.88826 0.90454 0.87633 0.78142 0.87468 0.90469 0.75162 0.88613 0.88602 0.93059 0.86833 0.84103 0.83679 0.84736 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.47 71.24 0.75 -0.05 16 2 C 0.01 0.23 7.33 43.58 0.32 0.55 16 3 C -0.20 -3.39 11.06 22.40 0.25 -3.14 16 4 C -0.04 -0.95 6.86 25.04 0.17 -0.78 16 5 C 0.21 5.00 6.24 85.64 0.53 5.54 16 6 N -0.73 -19.44 5.55 -466.79 -2.59 -22.03 16 7 C 0.52 19.62 7.58 87.66 0.66 20.28 16 8 O -0.55 -27.15 15.01 -3.01 -0.05 -27.19 16 9 C -0.11 -4.13 4.94 29.85 0.15 -3.99 16 10 C 0.07 3.54 1.31 -12.29 -0.02 3.53 16 11 H 0.01 0.62 6.24 -2.39 -0.01 0.61 16 12 C -0.56 -30.69 6.40 25.60 0.16 -30.53 16 13 H 0.04 2.15 7.82 -2.91 -0.02 2.13 16 14 C -0.02 -1.33 5.45 84.65 0.46 -0.87 16 15 N -0.94 -59.22 13.63 21.45 0.29 -58.93 16 16 Si 1.10 53.61 29.91 68.60 2.05 55.66 16 17 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 20 C -0.05 -2.40 4.77 -19.86 -0.09 -2.49 16 21 C -0.12 -4.83 8.88 22.27 0.20 -4.64 16 22 C -0.13 -4.06 10.05 22.27 0.22 -3.84 16 23 C -0.15 -4.44 10.05 22.27 0.22 -4.22 16 24 C -0.13 -4.27 10.05 22.27 0.22 -4.05 16 25 C -0.15 -6.30 9.67 22.27 0.22 -6.09 16 26 O 0.08 2.09 11.20 71.58 0.80 2.89 16 27 N -0.39 -9.71 12.07 -49.57 -0.60 -10.31 16 28 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.20 2.19 8.06 -2.91 -0.02 2.16 16 32 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.41 8.59 8.46 -92.71 -0.78 7.81 16 35 H 0.10 3.25 7.86 -2.39 -0.02 3.23 16 36 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.26 16.31 6.68 -92.71 -0.62 15.69 16 38 H 0.11 4.34 7.80 -2.91 -0.02 4.32 16 39 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 40 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 41 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 42 H 0.10 4.15 7.95 -2.91 -0.02 4.13 16 Total: -1.00 -76.87 363.67 4.75 -72.12 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.40 Total: 22.56 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 4.43 Total: -34.78 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -2.90 Total: -91.26 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.76 Total: -24.31 kcal Atomic # 14 Polarization: 53.61 SS G_CDS: 2.05 Total: 55.66 kcal Total: -76.87 4.75 -72.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355118901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.825 kcal (2) G-P(sol) polarization free energy of solvation -76.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds