Wall clock time and date at job start Tue Mar 31 2020 11:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41384 * 126.80052 * 2 1 4 4 C 1.35452 * 103.98453 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.77607 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47062 * 89.99890 * 5 4 3 7 7 C 1.34784 * 120.00002 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99632 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00050 * 180.27582 * 7 6 5 10 10 C 1.52995 * 109.47199 * 179.72200 * 9 7 6 11 11 H 1.08997 * 109.47387 * 305.00174 * 10 9 7 12 12 C 1.50699 * 109.46853 * 64.99938 * 10 9 7 13 13 H 1.08002 * 120.00442 * 29.59091 * 12 10 9 14 14 C 1.37878 * 120.00157 * 209.58173 * 12 10 9 15 15 N 1.31520 * 119.99619 * 4.94392 * 14 12 10 16 16 Si 1.86803 * 120.00325 * 184.94369 * 14 12 10 17 17 H 1.48497 * 109.47260 * 60.00162 * 16 14 12 18 18 H 1.48499 * 109.47122 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46814 * 300.00138 * 16 14 12 20 20 C 1.50704 * 109.47187 * 184.99723 * 10 9 7 21 21 C 1.38227 * 120.00195 * 296.77096 * 20 10 9 22 22 C 1.38237 * 119.99994 * 179.80952 * 21 20 10 23 23 C 1.38232 * 119.99955 * 0.39442 * 22 21 20 24 24 C 1.38240 * 119.99888 * 359.86222 * 23 22 21 25 25 C 1.38230 * 119.99698 * 359.95166 * 24 23 22 26 26 O 1.34043 * 106.44471 * 0.23995 * 4 3 2 27 27 N 1.20921 * 111.56617 * 359.56409 * 26 4 3 28 28 H 1.09002 * 109.46496 * 90.00525 * 1 2 3 29 29 H 1.08995 * 109.46639 * 210.00083 * 1 2 3 30 30 H 1.08995 * 109.46843 * 330.00366 * 1 2 3 31 31 H 1.07994 * 128.00784 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.47690 * 329.99660 * 5 4 3 33 33 H 1.09006 * 109.47376 * 209.99878 * 5 4 3 34 34 H 0.96999 * 120.00382 * 0.02562 * 6 5 4 35 35 H 1.08996 * 109.47036 * 299.72548 * 9 7 6 36 36 H 1.08999 * 109.47259 * 59.72290 * 9 7 6 37 37 H 0.97006 * 119.99578 * 180.02562 * 15 14 12 38 38 H 1.08002 * 120.00181 * 0.02562 * 21 20 10 39 39 H 1.08006 * 119.99590 * 180.23383 * 22 21 20 40 40 H 1.07999 * 119.99783 * 179.83102 * 23 22 21 41 41 H 1.07995 * 119.99317 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.99302 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6069 -0.0006 5 6 4.9022 1.3696 -0.0014 6 7 5.3240 1.6170 1.3796 7 6 6.4668 2.2882 1.6252 8 8 7.1459 2.6869 0.7029 9 6 6.9039 2.5373 3.0457 10 6 8.2259 3.3073 3.0448 11 1 8.9623 2.7644 2.4524 12 6 8.0105 4.6744 2.4485 13 1 7.0495 5.1585 2.5406 14 6 9.0403 5.3073 1.7852 15 7 10.1793 4.6799 1.5881 16 14 8.8179 7.0559 1.1667 17 1 8.5247 7.9530 2.3131 18 1 10.0626 7.5044 0.4923 19 1 7.6895 7.1000 0.2024 20 6 8.7254 3.4495 4.4596 21 6 7.9878 4.1645 5.3844 22 6 8.4440 4.2916 6.6831 23 6 9.6419 3.7104 7.0548 24 6 10.3821 2.9997 6.1286 25 6 9.9240 2.8695 4.8309 26 8 3.4538 -0.7253 -0.0063 27 7 2.2869 -1.0423 -0.0005 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 2.0710 2.1743 0.0004 32 1 4.7649 2.3210 -0.5153 33 1 5.6658 0.7859 -0.5155 34 1 4.7810 1.2977 2.1172 35 1 6.1431 3.1220 3.5627 36 1 7.0390 1.5840 3.5567 37 1 10.9040 5.1254 1.1218 38 1 7.0533 4.6210 5.0933 39 1 7.8657 4.8471 7.4067 40 1 9.9996 3.8120 8.0688 41 1 11.3182 2.5461 6.4190 42 1 10.5022 2.3139 4.1074 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355118903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:05 Heat of formation + Delta-G solvation = 43.478004 kcal Electronic energy + Delta-G solvation = -24986.956658 eV Core-core repulsion = 21321.119332 eV Total energy + Delta-G solvation = -3665.837326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.11157 -39.15605 -38.20566 -35.21942 -34.87774 -33.90374 -31.96100 -31.37689 -30.01187 -28.99704 -28.93033 -26.84308 -25.10386 -23.26807 -22.68839 -21.62409 -20.42736 -20.27216 -19.28491 -17.76883 -17.55193 -16.60580 -16.29030 -15.80600 -15.44937 -14.92969 -14.56756 -14.36157 -14.14383 -13.87770 -13.67396 -13.65009 -13.28994 -13.03728 -12.97902 -12.54535 -12.39982 -12.28472 -11.96634 -11.71280 -11.61753 -11.29186 -10.86249 -10.71434 -10.59906 -10.27217 -10.23533 -10.05306 -9.83107 -9.43999 -9.14103 -8.87253 -8.73957 -8.32895 -8.04869 -7.62675 -5.92846 -3.92589 1.17087 1.98539 2.28504 2.34009 2.84373 3.38280 3.42130 3.43908 3.47196 3.72346 3.95847 4.20742 4.51156 4.74460 4.80103 4.94952 5.09000 5.16603 5.32562 5.39469 5.44782 5.57897 5.65254 5.66184 5.72716 5.80540 5.84745 5.87697 6.08381 6.17009 6.28381 6.40980 6.52958 6.69044 6.78600 6.90367 7.03530 7.30823 7.44406 7.52513 7.86851 7.94186 7.94941 8.05802 8.06334 8.37906 8.97920 9.06782 9.68500 11.17112 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.003280 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.241880 B = 8534.698391 C = 9744.743072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.215 4.215 4 C -0.037 4.037 5 C 0.203 3.797 6 N -0.749 5.749 7 C 0.515 3.485 8 O -0.488 6.488 9 C -0.120 4.120 10 C 0.079 3.921 11 H 0.074 0.926 12 C -0.493 4.493 13 H 0.050 0.950 14 C 0.077 3.923 15 N -0.880 5.880 16 Si 0.885 3.115 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.023 4.023 21 C -0.114 4.114 22 C -0.133 4.133 23 C -0.155 4.155 24 C -0.129 4.129 25 C -0.119 4.119 26 O 0.105 5.895 27 N -0.365 5.365 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.396 0.604 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.260 0.740 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.993 -7.306 1.893 15.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.148 4.148 3 C -0.237 4.237 4 C -0.100 4.100 5 C 0.078 3.922 6 N -0.407 5.407 7 C 0.302 3.698 8 O -0.358 6.358 9 C -0.161 4.161 10 C 0.060 3.940 11 H 0.092 0.908 12 C -0.531 4.531 13 H 0.068 0.932 14 C -0.126 4.126 15 N -0.517 5.517 16 Si 0.713 3.287 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.024 4.024 21 C -0.133 4.133 22 C -0.151 4.151 23 C -0.173 4.173 24 C -0.147 4.147 25 C -0.137 4.137 26 O 0.038 5.962 27 N -0.069 5.069 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.192 0.808 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.229 0.771 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.474 -8.288 1.088 15.857 hybrid contribution -0.414 1.864 -0.004 1.909 sum -13.888 -6.424 1.084 15.340 Atomic orbital electron populations 1.20163 0.85885 1.03818 1.03372 1.23646 0.99120 0.88858 1.03131 1.22544 0.91071 1.01360 1.08714 1.24604 0.98370 0.83731 1.03338 1.19520 0.88142 0.97903 0.86600 1.46282 1.26715 1.61382 1.06331 1.20972 0.79224 0.76571 0.93048 1.90792 1.52309 1.46849 1.45890 1.21776 1.01900 1.00807 0.91571 1.17834 0.91129 0.96626 0.88412 0.90834 1.20638 0.97307 1.00679 1.34460 0.93185 1.24812 0.95484 0.97347 0.94945 1.69894 1.04108 1.36428 1.41245 0.86783 0.77398 0.85574 0.78948 1.20443 1.21406 1.20374 1.20750 0.93298 0.91800 0.96539 1.20951 1.00532 0.99284 0.92487 1.20982 0.96754 1.00804 0.96535 1.20802 0.96393 1.01453 0.98676 1.20990 0.99183 1.00296 0.94197 1.21104 0.96855 1.00640 0.95100 1.84853 1.21467 1.22817 1.67107 1.73865 0.89396 1.24221 1.19376 0.90183 0.90577 0.89930 0.80833 0.88279 0.89387 0.77083 0.90390 0.91427 0.93073 0.86858 0.87673 0.87811 0.87627 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.48 36.01 0.38 -0.14 16 2 C 0.01 0.11 7.33 -82.10 -0.60 -0.49 16 3 C -0.21 -2.14 11.06 -39.38 -0.44 -2.57 16 4 C -0.04 -0.41 6.86 -35.31 -0.24 -0.65 16 5 C 0.20 2.51 6.23 -5.20 -0.03 2.47 16 6 N -0.75 -10.30 5.55 -61.47 -0.34 -10.65 16 7 C 0.51 9.61 7.58 -10.98 -0.08 9.53 16 8 O -0.49 -11.56 14.98 5.56 0.08 -11.47 16 9 C -0.12 -2.21 4.94 -27.89 -0.14 -2.35 16 10 C 0.08 1.83 1.68 -92.92 -0.16 1.67 16 11 H 0.07 1.97 6.95 -51.93 -0.36 1.61 16 12 C -0.49 -12.90 6.38 -34.44 -0.22 -13.12 16 13 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 14 C 0.08 2.14 5.45 -17.82 -0.10 2.05 16 15 N -0.88 -25.48 12.85 55.43 0.71 -24.77 16 16 Si 0.88 21.73 29.54 -169.99 -5.02 16.71 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 C -0.02 -0.50 4.77 -104.63 -0.50 -1.00 16 21 C -0.11 -2.26 8.86 -39.59 -0.35 -2.61 16 22 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 23 C -0.16 -2.67 10.05 -39.58 -0.40 -3.06 16 24 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 25 C -0.12 -2.47 9.67 -39.59 -0.38 -2.86 16 26 O 0.10 1.33 11.20 17.17 0.19 1.52 16 27 N -0.36 -4.65 12.07 33.42 0.40 -4.25 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.40 4.46 8.46 -40.82 -0.35 4.11 16 35 H 0.08 1.31 7.76 -51.93 -0.40 0.91 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.11 2.14 7.75 -52.49 -0.41 1.74 16 39 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.11 2.40 7.95 -52.48 -0.42 1.99 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -32.36 365.03 -8.23 -40.60 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.71 Total: 5.42 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -4.05 Total: -18.62 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.77 Total: -39.66 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.28 Total: -9.95 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.36 -8.23 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355118903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.074 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds