Wall clock time and date at job start Tue Mar 31 2020 11:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41384 * 126.80052 * 2 1 4 4 C 1.35452 * 103.98453 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.77607 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47062 * 89.99890 * 5 4 3 7 7 C 1.34784 * 120.00002 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99632 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00050 * 180.27582 * 7 6 5 10 10 C 1.52995 * 109.47199 * 179.72200 * 9 7 6 11 11 H 1.08997 * 109.47387 * 305.00174 * 10 9 7 12 12 C 1.50699 * 109.46853 * 64.99938 * 10 9 7 13 13 H 1.08002 * 120.00442 * 29.59091 * 12 10 9 14 14 C 1.37878 * 120.00157 * 209.58173 * 12 10 9 15 15 N 1.31520 * 119.99619 * 4.94392 * 14 12 10 16 16 Si 1.86803 * 120.00325 * 184.94369 * 14 12 10 17 17 H 1.48497 * 109.47260 * 60.00162 * 16 14 12 18 18 H 1.48499 * 109.47122 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46814 * 300.00138 * 16 14 12 20 20 C 1.50704 * 109.47187 * 184.99723 * 10 9 7 21 21 C 1.38227 * 120.00195 * 296.77096 * 20 10 9 22 22 C 1.38237 * 119.99994 * 179.80952 * 21 20 10 23 23 C 1.38232 * 119.99955 * 0.39442 * 22 21 20 24 24 C 1.38240 * 119.99888 * 359.86222 * 23 22 21 25 25 C 1.38230 * 119.99698 * 359.95166 * 24 23 22 26 26 O 1.34043 * 106.44471 * 0.23995 * 4 3 2 27 27 N 1.20921 * 111.56617 * 359.56409 * 26 4 3 28 28 H 1.09002 * 109.46496 * 90.00525 * 1 2 3 29 29 H 1.08995 * 109.46639 * 210.00083 * 1 2 3 30 30 H 1.08995 * 109.46843 * 330.00366 * 1 2 3 31 31 H 1.07994 * 128.00784 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.47690 * 329.99660 * 5 4 3 33 33 H 1.09006 * 109.47376 * 209.99878 * 5 4 3 34 34 H 0.96999 * 120.00382 * 0.02562 * 6 5 4 35 35 H 1.08996 * 109.47036 * 299.72548 * 9 7 6 36 36 H 1.08999 * 109.47259 * 59.72290 * 9 7 6 37 37 H 0.97006 * 119.99578 * 180.02562 * 15 14 12 38 38 H 1.08002 * 120.00181 * 0.02562 * 21 20 10 39 39 H 1.08006 * 119.99590 * 180.23383 * 22 21 20 40 40 H 1.07999 * 119.99783 * 179.83102 * 23 22 21 41 41 H 1.07995 * 119.99317 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.99302 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6069 -0.0006 5 6 4.9022 1.3696 -0.0014 6 7 5.3240 1.6170 1.3796 7 6 6.4668 2.2882 1.6252 8 8 7.1459 2.6869 0.7029 9 6 6.9039 2.5373 3.0457 10 6 8.2259 3.3073 3.0448 11 1 8.9623 2.7644 2.4524 12 6 8.0105 4.6744 2.4485 13 1 7.0495 5.1585 2.5406 14 6 9.0403 5.3073 1.7852 15 7 10.1793 4.6799 1.5881 16 14 8.8179 7.0559 1.1667 17 1 8.5247 7.9530 2.3131 18 1 10.0626 7.5044 0.4923 19 1 7.6895 7.1000 0.2024 20 6 8.7254 3.4495 4.4596 21 6 7.9878 4.1645 5.3844 22 6 8.4440 4.2916 6.6831 23 6 9.6419 3.7104 7.0548 24 6 10.3821 2.9997 6.1286 25 6 9.9240 2.8695 4.8309 26 8 3.4538 -0.7253 -0.0063 27 7 2.2869 -1.0423 -0.0005 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 2.0710 2.1743 0.0004 32 1 4.7649 2.3210 -0.5153 33 1 5.6658 0.7859 -0.5155 34 1 4.7810 1.2977 2.1172 35 1 6.1431 3.1220 3.5627 36 1 7.0390 1.5840 3.5567 37 1 10.9040 5.1254 1.1218 38 1 7.0533 4.6210 5.0933 39 1 7.8657 4.8471 7.4067 40 1 9.9996 3.8120 8.0688 41 1 11.3182 2.5461 6.4190 42 1 10.5022 2.3139 4.1074 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355118903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:05 Heat of formation + Delta-G solvation = 24.061502 kcal Electronic energy + Delta-G solvation = -24987.798621 eV Core-core repulsion = 21321.119332 eV Total energy + Delta-G solvation = -3666.679289 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.98050 -40.66341 -39.68442 -36.44938 -35.77048 -35.58158 -33.45564 -32.86516 -31.47948 -30.42543 -29.58118 -28.22529 -26.76971 -24.37239 -24.05324 -23.10904 -21.72596 -21.35270 -20.78155 -18.68942 -18.66494 -18.35836 -17.75335 -17.10388 -16.82068 -16.36524 -16.21162 -15.70176 -15.42048 -15.33799 -14.81360 -14.54134 -14.19350 -14.16039 -13.99991 -13.95716 -13.84101 -13.59647 -13.37230 -13.19390 -13.13452 -12.77271 -12.49413 -12.45109 -12.13777 -11.81640 -11.66002 -11.27035 -11.02594 -10.97298 -10.85200 -10.47128 -10.28089 -10.02892 -9.52223 -9.17422 -7.99121 -6.02057 0.26763 0.79952 0.86070 1.19045 1.41116 1.43062 1.47834 1.91052 1.98469 2.50072 2.52430 3.21071 3.24035 3.36465 3.39750 3.96974 4.06261 4.23442 4.28189 4.34996 4.37907 4.43868 4.57951 4.59575 4.61682 4.68639 4.70605 4.78695 4.88807 4.90215 4.95424 5.02495 5.24026 5.24953 5.40425 5.46949 5.54453 5.70848 5.82294 5.85967 5.98286 6.21308 6.44761 6.49087 6.69630 7.05778 7.19528 7.55390 7.60667 9.10218 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.003280 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.241880 B = 8534.698391 C = 9744.743072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.013 3.987 3 C -0.203 4.203 4 C -0.043 4.043 5 C 0.207 3.793 6 N -0.727 5.727 7 C 0.517 3.483 8 O -0.548 6.548 9 C -0.116 4.116 10 C 0.081 3.919 11 H 0.025 0.975 12 C -0.484 4.484 13 H 0.050 0.950 14 C 0.021 3.979 15 N -0.918 5.918 16 Si 0.934 3.066 17 H -0.268 1.268 18 H -0.292 1.292 19 H -0.277 1.277 20 C -0.047 4.047 21 C -0.126 4.126 22 C -0.128 4.128 23 C -0.148 4.148 24 C -0.130 4.130 25 C -0.144 4.144 26 O 0.084 5.916 27 N -0.392 5.392 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.199 0.801 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.412 0.588 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.252 0.748 38 H 0.119 0.881 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.462 -6.547 4.189 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 C -0.224 4.224 4 C -0.106 4.106 5 C 0.082 3.918 6 N -0.384 5.384 7 C 0.304 3.696 8 O -0.423 6.423 9 C -0.156 4.156 10 C 0.062 3.938 11 H 0.043 0.957 12 C -0.523 4.523 13 H 0.068 0.932 14 C -0.177 4.177 15 N -0.557 5.557 16 Si 0.761 3.239 17 H -0.193 1.193 18 H -0.218 1.218 19 H -0.203 1.203 20 C -0.047 4.047 21 C -0.144 4.144 22 C -0.145 4.145 23 C -0.166 4.166 24 C -0.148 4.148 25 C -0.163 4.163 26 O 0.020 5.980 27 N -0.099 5.099 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.216 0.784 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.248 0.752 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.137 0.863 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.148 0.852 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.991 -7.548 3.416 18.010 hybrid contribution 0.253 1.538 -0.641 1.685 sum -15.738 -6.011 2.775 17.074 Atomic orbital electron populations 1.20352 0.83357 1.05018 1.04576 1.24281 1.00713 0.88312 1.01285 1.22887 0.90181 1.02421 1.06953 1.24384 0.98195 0.83532 1.04539 1.19460 0.88703 0.98196 0.85398 1.45961 1.25217 1.59480 1.07788 1.21004 0.79766 0.76265 0.92516 1.90778 1.54402 1.49794 1.47312 1.21669 1.00098 1.01735 0.92083 1.17621 0.92202 0.95134 0.88856 0.95684 1.20968 0.96622 1.01580 1.33080 0.93206 1.25506 0.95644 1.00505 0.96062 1.70056 1.04880 1.37589 1.43204 0.85987 0.76939 0.82283 0.78659 1.19325 1.21845 1.20290 1.20591 0.94231 0.93766 0.96132 1.21064 1.00779 0.99267 0.93297 1.21383 0.97016 1.00048 0.96084 1.21262 0.95688 0.99608 1.00063 1.21280 1.00232 1.00140 0.93122 1.21119 0.96988 1.01831 0.96345 1.84827 1.21802 1.23384 1.68009 1.73877 0.89634 1.25465 1.20953 0.88868 0.90399 0.87725 0.78395 0.87947 0.90195 0.75226 0.88188 0.89066 0.93862 0.86320 0.84147 0.83998 0.85195 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.48 71.24 0.75 -0.09 16 2 C 0.01 0.24 7.33 43.58 0.32 0.56 16 3 C -0.20 -3.58 11.06 22.40 0.25 -3.33 16 4 C -0.04 -0.92 6.86 25.04 0.17 -0.75 16 5 C 0.21 5.06 6.23 85.63 0.53 5.60 16 6 N -0.73 -19.56 5.55 -466.78 -2.59 -22.15 16 7 C 0.52 19.56 7.58 87.65 0.66 20.22 16 8 O -0.55 -27.05 14.98 -3.03 -0.05 -27.10 16 9 C -0.12 -4.26 4.94 29.84 0.15 -4.11 16 10 C 0.08 3.88 1.68 -12.29 -0.02 3.86 16 11 H 0.02 1.43 6.95 -2.39 -0.02 1.41 16 12 C -0.48 -25.89 6.38 25.60 0.16 -25.72 16 13 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 14 C 0.02 1.22 5.45 84.65 0.46 1.68 16 15 N -0.92 -55.83 12.85 21.45 0.28 -55.55 16 16 Si 0.93 45.44 29.54 68.60 2.03 47.47 16 17 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 20 C -0.05 -2.03 4.77 -19.87 -0.09 -2.13 16 21 C -0.13 -4.77 8.86 22.27 0.20 -4.57 16 22 C -0.13 -4.05 10.05 22.27 0.22 -3.82 16 23 C -0.15 -4.55 10.05 22.27 0.22 -4.33 16 24 C -0.13 -4.52 10.05 22.27 0.22 -4.29 16 25 C -0.14 -6.14 9.67 22.27 0.22 -5.92 16 26 O 0.08 2.11 11.20 71.60 0.80 2.91 16 27 N -0.39 -9.68 12.07 -49.56 -0.60 -10.28 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.41 8.60 8.46 -92.71 -0.78 7.81 16 35 H 0.10 3.21 7.76 -2.39 -0.02 3.19 16 36 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 38 H 0.12 4.26 7.75 -2.91 -0.02 4.24 16 39 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 40 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 42 H 0.09 4.22 7.95 -2.91 -0.02 4.20 16 Total: -1.00 -74.04 365.03 4.55 -69.50 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.25 Total: 22.36 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 4.42 Total: -27.15 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -2.91 Total: -87.98 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: 0.76 Total: -24.19 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -74.04 4.55 -69.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355118903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.558 kcal (2) G-P(sol) polarization free energy of solvation -74.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds