Wall clock time and date at job start Tue Mar 31 2020 10:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33497 * 126.72683 * 2 1 4 4 N 1.20646 * 113.39582 * 180.33949 * 3 2 1 5 5 C 1.30873 * 112.10212 * 359.71341 * 4 3 2 6 6 C 1.48324 * 127.44676 * 180.02562 * 5 4 3 7 7 C 1.39389 * 120.12071 * 179.97438 * 6 5 4 8 8 C 1.37996 * 119.86881 * 180.02562 * 7 6 5 9 9 C 1.38346 * 120.12727 * 0.02562 * 8 7 6 10 10 C 1.38301 * 120.25028 * 359.97217 * 9 8 7 11 11 C 1.38043 * 120.12523 * 359.77206 * 10 9 8 12 12 C 1.50701 * 120.06437 * 180.24957 * 11 10 9 13 13 C 1.37214 * 126.72344 * 179.86082 * 2 1 3 14 14 C 1.47288 * 128.57379 * 359.96874 * 13 2 1 15 15 O 1.21615 * 119.99953 * 269.67600 * 14 13 2 16 16 N 1.34784 * 119.99801 * 89.67952 * 14 13 2 17 17 C 1.46494 * 119.99635 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47431 * 324.99476 * 17 16 14 19 19 C 1.53001 * 109.47305 * 85.00093 * 17 16 14 20 20 C 1.50710 * 109.46805 * 205.00189 * 17 16 14 21 21 H 1.07998 * 119.99789 * 0.02562 * 20 17 16 22 22 C 1.37880 * 119.99848 * 180.02562 * 20 17 16 23 23 N 1.31510 * 119.99695 * 180.02562 * 22 20 17 24 24 Si 1.86806 * 119.99858 * 359.97438 * 22 20 17 25 25 H 1.48492 * 109.46945 * 90.00441 * 24 22 20 26 26 H 1.48505 * 109.46682 * 210.00174 * 24 22 20 27 27 H 1.48491 * 109.47382 * 330.00009 * 24 22 20 28 28 H 1.09007 * 109.47102 * 270.14093 * 1 2 3 29 29 H 1.08998 * 109.47275 * 30.13618 * 1 2 3 30 30 H 1.08997 * 109.47533 * 150.14328 * 1 2 3 31 31 H 1.07992 * 120.06557 * 0.02562 * 7 6 5 32 32 H 1.07994 * 119.93285 * 179.97438 * 8 7 6 33 33 H 1.07995 * 119.87597 * 180.02562 * 9 8 7 34 34 H 1.07999 * 119.93831 * 180.02562 * 10 9 8 35 35 H 1.08996 * 109.47118 * 270.25501 * 12 11 10 36 36 H 1.09003 * 109.46620 * 30.25563 * 12 11 10 37 37 H 1.09000 * 109.46708 * 150.25086 * 12 11 10 38 38 H 0.96995 * 120.00015 * 359.72312 * 16 14 13 39 39 H 1.08991 * 109.46933 * 300.00042 * 19 17 16 40 40 H 1.09000 * 109.46920 * 59.99971 * 19 17 16 41 41 H 1.08996 * 109.46997 * 179.97438 * 19 17 16 42 42 H 0.97009 * 119.99767 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3053 1.0700 0.0000 4 7 3.4792 0.7918 -0.0066 5 6 3.6788 -0.5016 -0.0060 6 6 4.9801 -1.2133 -0.0122 7 6 5.0153 -2.6068 -0.0101 8 6 6.2289 -3.2636 -0.0154 9 6 7.4091 -2.5418 -0.0222 10 6 7.3801 -1.1591 -0.0244 11 6 6.1719 -0.4914 -0.0245 12 6 6.1419 1.0153 -0.0325 13 6 2.3274 -1.0998 0.0027 14 6 1.9536 -2.5244 0.0068 15 8 1.8055 -3.1112 1.0616 16 7 1.7757 -3.1778 -1.1586 17 6 1.4045 -4.5949 -1.1545 18 1 1.8877 -5.0948 -0.3151 19 6 -0.1141 -4.7240 -1.0194 20 6 1.8503 -5.2347 -2.4442 21 1 2.3596 -4.6447 -3.1918 22 6 1.6079 -6.5732 -2.6696 23 7 1.9974 -7.1315 -3.7948 24 14 0.7276 -7.5937 -1.3761 25 1 -0.7367 -7.5429 -1.6177 26 1 1.1937 -9.0015 -1.4548 27 1 1.0260 -7.0481 -0.0276 28 1 -0.3634 0.0025 1.0277 29 1 -0.3634 0.8887 -0.5159 30 1 -0.3634 -0.8912 -0.5116 31 1 4.0946 -3.1712 -0.0044 32 1 6.2573 -4.3432 -0.0134 33 1 8.3566 -3.0600 -0.0268 34 1 8.3045 -0.6006 -0.0301 35 1 6.1423 1.3841 0.9931 36 1 7.0208 1.3933 -0.5549 37 1 5.2412 1.3580 -0.5417 38 1 1.8900 -2.7088 -1.9999 39 1 -0.4365 -4.2612 -0.0868 40 1 -0.5973 -4.2242 -1.8590 41 1 -0.3903 -5.7783 -1.0169 42 1 1.8266 -8.0732 -3.9535 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355381333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:54 Heat of formation + Delta-G solvation = 51.751200 kcal Electronic energy + Delta-G solvation = -26281.951276 eV Core-core repulsion = 22616.472702 eV Total energy + Delta-G solvation = -3665.478574 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.78368 -39.48815 -38.96075 -35.14815 -34.30783 -33.72106 -32.48678 -32.37694 -30.47488 -30.00708 -28.00214 -26.91491 -25.33630 -24.83205 -23.14457 -21.77945 -21.20060 -20.02804 -19.60879 -18.05219 -17.72154 -16.97050 -16.38324 -15.91411 -15.60174 -15.14570 -15.02097 -14.55088 -14.22608 -13.89441 -13.60473 -13.36533 -13.32622 -13.18481 -13.06488 -12.89617 -12.81989 -12.28095 -12.18517 -12.08537 -11.88859 -11.39898 -11.37284 -11.08974 -10.91484 -10.71776 -10.65716 -10.26057 -9.88903 -9.48642 -9.35799 -9.26817 -8.82909 -8.72014 -8.42605 -8.32214 -6.25941 -4.29393 0.81637 1.37522 1.43311 2.36600 2.75714 2.91590 3.18590 3.31477 3.34504 3.69005 3.86849 4.08098 4.25566 4.26329 4.84544 4.89631 4.94258 5.06724 5.08346 5.11477 5.28204 5.29128 5.30714 5.46322 5.56136 5.60168 5.66635 5.74810 5.83099 5.89291 6.03558 6.21688 6.26921 6.27671 6.45467 6.50071 6.57016 6.59814 6.74547 6.97966 7.07381 7.13466 7.40295 8.02538 8.22049 8.39756 8.64625 8.76547 9.33640 10.86021 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012715 B = 0.004975 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.551864 B = 5627.002644 C = 7240.009650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.013 3.987 3 O 0.093 5.907 4 N -0.349 5.349 5 C 0.100 3.900 6 C -0.035 4.035 7 C -0.076 4.076 8 C -0.120 4.120 9 C -0.101 4.101 10 C -0.130 4.130 11 C -0.057 4.057 12 C -0.125 4.125 13 C -0.232 4.232 14 C 0.584 3.416 15 O -0.538 6.538 16 N -0.688 5.688 17 C 0.236 3.764 18 H 0.051 0.949 19 C -0.163 4.163 20 C -0.536 4.536 21 H 0.081 0.919 22 C 0.081 3.919 23 N -0.889 5.889 24 Si 0.883 3.117 25 H -0.276 1.276 26 H -0.293 1.293 27 H -0.262 1.262 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.398 0.602 39 H 0.036 0.964 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 14.635 6.433 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.050 4.050 3 O 0.032 5.968 4 N -0.055 5.055 5 C -0.059 4.059 6 C -0.036 4.036 7 C -0.096 4.096 8 C -0.138 4.138 9 C -0.120 4.120 10 C -0.148 4.148 11 C -0.058 4.058 12 C -0.182 4.182 13 C -0.240 4.240 14 C 0.368 3.632 15 O -0.416 6.416 16 N -0.335 5.335 17 C 0.133 3.867 18 H 0.068 0.932 19 C -0.221 4.221 20 C -0.574 4.574 21 H 0.099 0.901 22 C -0.123 4.123 23 N -0.526 5.526 24 Si 0.713 3.287 25 H -0.202 1.202 26 H -0.221 1.221 27 H -0.186 1.186 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.232 0.768 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.176 15.103 7.044 17.180 hybrid contribution -0.695 -1.274 0.121 1.456 sum 3.481 13.829 7.165 15.959 Atomic orbital electron populations 1.20458 0.83147 1.05132 1.04701 1.24478 0.95899 0.84960 0.99697 1.84481 1.11333 1.33192 1.67833 1.73915 0.95251 1.15663 1.20703 1.22934 0.93057 0.88501 1.01381 1.17545 0.88044 0.92501 1.05464 1.21416 0.99503 0.92634 0.96036 1.21139 0.91789 1.00636 1.00269 1.21284 0.98365 0.94040 0.98269 1.20927 0.96915 0.94413 1.02497 1.19954 0.91883 0.96341 0.97622 1.21092 1.03789 0.90581 1.02701 1.22160 0.92150 0.96086 1.13580 1.16873 0.77776 0.83578 0.85020 1.90807 1.52096 1.67523 1.31203 1.46272 1.67237 1.13114 1.06905 1.19201 0.91413 0.76800 0.99276 0.93172 1.22464 0.99272 1.00513 0.99819 1.20989 1.39671 0.95447 1.01267 0.90075 1.24810 0.94912 0.97365 0.95256 1.69864 1.45949 1.12766 1.24025 0.86914 0.79735 0.79127 0.82963 1.20236 1.22073 1.18634 0.88804 0.89209 0.88572 0.84925 0.85068 0.85672 0.85708 0.91162 0.91778 0.89045 0.76776 0.94448 0.92630 0.93230 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.32 36.00 0.37 -0.35 16 2 C 0.01 0.17 7.53 -34.68 -0.26 -0.09 16 3 O 0.09 1.27 11.05 18.64 0.21 1.48 16 4 N -0.35 -5.26 8.71 34.60 0.30 -4.95 16 5 C 0.10 1.65 7.11 -80.22 -0.57 1.08 16 6 C -0.03 -0.57 5.88 -104.91 -0.62 -1.18 16 7 C -0.08 -1.31 9.57 -39.24 -0.38 -1.69 16 8 C -0.12 -1.79 10.03 -39.63 -0.40 -2.19 16 9 C -0.10 -1.27 10.04 -39.52 -0.40 -1.66 16 10 C -0.13 -1.60 9.69 -39.63 -0.38 -1.98 16 11 C -0.06 -0.80 5.91 -104.28 -0.62 -1.42 16 12 C -0.13 -1.51 9.22 36.01 0.33 -1.18 16 13 C -0.23 -3.84 6.20 -102.69 -0.64 -4.48 16 14 C 0.58 11.17 4.91 -12.58 -0.06 11.10 16 15 O -0.54 -12.04 16.69 5.26 0.09 -11.95 16 16 N -0.69 -13.35 4.99 -56.05 -0.28 -13.63 16 17 C 0.24 5.38 2.15 -69.08 -0.15 5.23 16 18 H 0.05 1.26 6.64 -51.93 -0.34 0.91 16 19 C -0.16 -3.43 8.96 37.16 0.33 -3.10 16 20 C -0.54 -13.95 9.31 -34.43 -0.32 -14.27 16 21 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 22 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 23 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 24 Si 0.88 21.02 24.37 -169.99 -4.14 16.88 16 25 H -0.28 -6.34 6.87 56.52 0.39 -5.95 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.13 2.57 5.18 -52.49 -0.27 2.29 16 32 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.09 1.21 5.24 -51.93 -0.27 0.94 16 38 H 0.40 7.10 8.53 -40.82 -0.35 6.75 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 42 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -31.25 348.78 -6.87 -38.12 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.23 Total: 7.80 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -3.85 Total: -14.08 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.80 Total: -43.50 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.29 Total: -10.48 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.88 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.25 -6.87 -38.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355381333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.872 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds