Wall clock time and date at job start Tue Mar 31 2020 10:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33497 * 126.72683 * 2 1 4 4 N 1.20646 * 113.39582 * 180.33949 * 3 2 1 5 5 C 1.30873 * 112.10212 * 359.71341 * 4 3 2 6 6 C 1.48324 * 127.44676 * 180.02562 * 5 4 3 7 7 C 1.39389 * 120.12071 * 179.97438 * 6 5 4 8 8 C 1.37996 * 119.86881 * 180.02562 * 7 6 5 9 9 C 1.38346 * 120.12727 * 0.02562 * 8 7 6 10 10 C 1.38301 * 120.25028 * 359.97217 * 9 8 7 11 11 C 1.38043 * 120.12523 * 359.77206 * 10 9 8 12 12 C 1.50701 * 120.06437 * 180.24957 * 11 10 9 13 13 C 1.37214 * 126.72344 * 179.86082 * 2 1 3 14 14 C 1.47288 * 128.57379 * 359.96874 * 13 2 1 15 15 O 1.21615 * 119.99953 * 269.67600 * 14 13 2 16 16 N 1.34784 * 119.99801 * 89.67952 * 14 13 2 17 17 C 1.46494 * 119.99635 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47431 * 324.99476 * 17 16 14 19 19 C 1.53001 * 109.47305 * 85.00093 * 17 16 14 20 20 C 1.50710 * 109.46805 * 205.00189 * 17 16 14 21 21 H 1.07998 * 119.99789 * 0.02562 * 20 17 16 22 22 C 1.37880 * 119.99848 * 180.02562 * 20 17 16 23 23 N 1.31510 * 119.99695 * 180.02562 * 22 20 17 24 24 Si 1.86806 * 119.99858 * 359.97438 * 22 20 17 25 25 H 1.48492 * 109.46945 * 90.00441 * 24 22 20 26 26 H 1.48505 * 109.46682 * 210.00174 * 24 22 20 27 27 H 1.48491 * 109.47382 * 330.00009 * 24 22 20 28 28 H 1.09007 * 109.47102 * 270.14093 * 1 2 3 29 29 H 1.08998 * 109.47275 * 30.13618 * 1 2 3 30 30 H 1.08997 * 109.47533 * 150.14328 * 1 2 3 31 31 H 1.07992 * 120.06557 * 0.02562 * 7 6 5 32 32 H 1.07994 * 119.93285 * 179.97438 * 8 7 6 33 33 H 1.07995 * 119.87597 * 180.02562 * 9 8 7 34 34 H 1.07999 * 119.93831 * 180.02562 * 10 9 8 35 35 H 1.08996 * 109.47118 * 270.25501 * 12 11 10 36 36 H 1.09003 * 109.46620 * 30.25563 * 12 11 10 37 37 H 1.09000 * 109.46708 * 150.25086 * 12 11 10 38 38 H 0.96995 * 120.00015 * 359.72312 * 16 14 13 39 39 H 1.08991 * 109.46933 * 300.00042 * 19 17 16 40 40 H 1.09000 * 109.46920 * 59.99971 * 19 17 16 41 41 H 1.08996 * 109.46997 * 179.97438 * 19 17 16 42 42 H 0.97009 * 119.99767 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3053 1.0700 0.0000 4 7 3.4792 0.7918 -0.0066 5 6 3.6788 -0.5016 -0.0060 6 6 4.9801 -1.2133 -0.0122 7 6 5.0153 -2.6068 -0.0101 8 6 6.2289 -3.2636 -0.0154 9 6 7.4091 -2.5418 -0.0222 10 6 7.3801 -1.1591 -0.0244 11 6 6.1719 -0.4914 -0.0245 12 6 6.1419 1.0153 -0.0325 13 6 2.3274 -1.0998 0.0027 14 6 1.9536 -2.5244 0.0068 15 8 1.8055 -3.1112 1.0616 16 7 1.7757 -3.1778 -1.1586 17 6 1.4045 -4.5949 -1.1545 18 1 1.8877 -5.0948 -0.3151 19 6 -0.1141 -4.7240 -1.0194 20 6 1.8503 -5.2347 -2.4442 21 1 2.3596 -4.6447 -3.1918 22 6 1.6079 -6.5732 -2.6696 23 7 1.9974 -7.1315 -3.7948 24 14 0.7276 -7.5937 -1.3761 25 1 -0.7367 -7.5429 -1.6177 26 1 1.1937 -9.0015 -1.4548 27 1 1.0260 -7.0481 -0.0276 28 1 -0.3634 0.0025 1.0277 29 1 -0.3634 0.8887 -0.5159 30 1 -0.3634 -0.8912 -0.5116 31 1 4.0946 -3.1712 -0.0044 32 1 6.2573 -4.3432 -0.0134 33 1 8.3566 -3.0600 -0.0268 34 1 8.3045 -0.6006 -0.0301 35 1 6.1423 1.3841 0.9931 36 1 7.0208 1.3933 -0.5549 37 1 5.2412 1.3580 -0.5417 38 1 1.8900 -2.7088 -1.9999 39 1 -0.4365 -4.2612 -0.0868 40 1 -0.5973 -4.2242 -1.8590 41 1 -0.3903 -5.7783 -1.0169 42 1 1.8266 -8.0732 -3.9535 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355381333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:54 Heat of formation + Delta-G solvation = 32.326740 kcal Electronic energy + Delta-G solvation = -26282.793583 eV Core-core repulsion = 22616.472702 eV Total energy + Delta-G solvation = -3666.320881 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.95558 -40.87023 -40.26745 -36.93725 -35.48702 -34.85884 -34.34704 -33.51859 -31.83286 -31.50567 -28.99866 -27.93377 -27.25355 -26.19750 -24.37236 -22.91518 -22.75489 -21.51902 -20.88307 -19.58262 -18.88960 -18.39203 -17.87902 -17.45930 -17.14598 -16.49273 -16.19588 -16.05992 -15.62411 -15.05332 -14.91196 -14.88167 -14.63695 -14.30063 -14.14027 -14.12192 -14.07141 -13.81921 -13.71546 -13.26614 -13.16076 -12.97098 -12.80242 -12.47886 -12.15572 -12.14172 -11.85176 -11.83843 -11.63401 -11.32042 -11.17609 -10.88275 -10.47718 -10.04904 -9.82903 -9.53526 -8.38348 -6.45152 -0.32426 0.24611 0.31613 1.18780 1.26852 1.30648 1.36343 1.45078 1.75783 2.25536 2.31974 2.74936 2.82220 2.97609 3.13506 3.74252 3.81617 3.83492 3.87505 4.06341 4.19567 4.31817 4.37168 4.45593 4.48970 4.55294 4.59159 4.66440 4.70977 4.73941 4.77426 4.81428 4.94279 4.97037 5.07116 5.27069 5.28620 5.37667 5.40249 5.47390 5.50047 5.51845 5.92344 6.08322 6.53660 6.67552 7.07883 7.08614 7.25432 8.76908 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012715 B = 0.004975 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.551864 B = 5627.002644 C = 7240.009650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.042 3.958 3 O 0.105 5.895 4 N -0.348 5.348 5 C 0.087 3.913 6 C -0.058 4.058 7 C -0.107 4.107 8 C -0.137 4.137 9 C -0.093 4.093 10 C -0.121 4.121 11 C -0.064 4.064 12 C -0.121 4.121 13 C -0.273 4.273 14 C 0.599 3.401 15 O -0.575 6.575 16 N -0.684 5.684 17 C 0.243 3.757 18 H 0.025 0.975 19 C -0.156 4.156 20 C -0.532 4.532 21 H 0.053 0.947 22 C 0.033 3.967 23 N -0.932 5.932 24 Si 0.937 3.063 25 H -0.256 1.256 26 H -0.293 1.293 27 H -0.261 1.261 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.405 0.595 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 16.604 7.226 18.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.021 4.021 3 O 0.043 5.957 4 N -0.054 5.054 5 C -0.072 4.072 6 C -0.059 4.059 7 C -0.127 4.127 8 C -0.155 4.155 9 C -0.111 4.111 10 C -0.139 4.139 11 C -0.065 4.065 12 C -0.177 4.177 13 C -0.280 4.280 14 C 0.385 3.615 15 O -0.456 6.456 16 N -0.332 5.332 17 C 0.139 3.861 18 H 0.043 0.957 19 C -0.214 4.214 20 C -0.570 4.570 21 H 0.071 0.929 22 C -0.167 4.167 23 N -0.571 5.571 24 Si 0.764 3.236 25 H -0.182 1.182 26 H -0.221 1.221 27 H -0.186 1.186 28 H 0.129 0.871 29 H 0.143 0.857 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.150 0.850 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.240 0.760 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.254 17.108 7.826 19.288 hybrid contribution -0.628 -1.782 -0.152 1.896 sum 3.626 15.325 7.674 17.518 Atomic orbital electron populations 1.20754 0.79994 1.06698 1.06219 1.25100 0.97227 0.83625 0.96152 1.84478 1.11071 1.32993 1.67184 1.73925 0.95809 1.14786 1.20843 1.23089 0.93228 0.88987 1.01889 1.17748 0.89168 0.92295 1.06653 1.21306 0.99169 0.93346 0.98875 1.21309 0.92210 1.01018 1.00929 1.21660 0.98629 0.94436 0.96390 1.21389 0.97675 0.94487 1.00341 1.20320 0.91686 0.97542 0.96991 1.21094 1.04379 0.89045 1.03214 1.21905 0.93342 0.95198 1.17565 1.16985 0.76213 0.84442 0.83908 1.90767 1.53660 1.68789 1.32351 1.46062 1.67466 1.11947 1.07687 1.18882 0.92658 0.78240 0.96357 0.95684 1.22351 0.97388 1.00436 1.01252 1.21152 1.38713 0.95457 1.01727 0.92884 1.25520 0.95757 0.98535 0.96921 1.69977 1.47789 1.13299 1.25988 0.86036 0.79702 0.77395 0.80456 1.18156 1.22060 1.18620 0.87080 0.85659 0.88919 0.88150 0.85035 0.82193 0.81890 0.90585 0.89137 0.90372 0.75955 0.92991 0.91155 0.93843 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.32 71.23 0.74 -0.54 16 2 C 0.04 1.08 7.53 25.44 0.19 1.27 16 3 O 0.10 2.68 11.05 76.96 0.85 3.53 16 4 N -0.35 -10.21 8.71 -45.01 -0.39 -10.60 16 5 C 0.09 2.89 7.11 44.50 0.32 3.21 16 6 C -0.06 -1.93 5.88 -20.05 -0.12 -2.05 16 7 C -0.11 -3.90 9.57 22.49 0.22 -3.68 16 8 C -0.14 -4.18 10.03 22.24 0.22 -3.96 16 9 C -0.09 -2.16 10.04 22.31 0.22 -1.94 16 10 C -0.12 -2.68 9.69 22.24 0.22 -2.46 16 11 C -0.06 -1.73 5.91 -19.64 -0.12 -1.84 16 12 C -0.12 -2.66 9.22 71.24 0.66 -2.01 16 13 C -0.27 -9.11 6.20 -18.61 -0.12 -9.23 16 14 C 0.60 23.59 4.91 86.62 0.43 24.01 16 15 O -0.57 -26.61 16.69 -4.08 -0.07 -26.68 16 16 N -0.68 -27.43 4.99 -449.49 -2.24 -29.68 16 17 C 0.24 11.30 2.15 44.25 0.10 11.39 16 18 H 0.03 1.31 6.64 -2.39 -0.02 1.29 16 19 C -0.16 -6.46 8.96 71.98 0.65 -5.81 16 20 C -0.53 -28.61 9.31 25.60 0.24 -28.37 16 21 H 0.05 3.08 7.98 -2.91 -0.02 3.06 16 22 C 0.03 1.81 5.45 84.66 0.46 2.28 16 23 N -0.93 -55.13 13.96 21.45 0.30 -54.83 16 24 Si 0.94 43.61 24.37 68.60 1.67 45.29 16 25 H -0.26 -11.07 6.87 99.48 0.68 -10.39 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.26 -12.08 6.53 99.48 0.65 -11.43 16 28 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.63 8.10 -2.39 -0.02 1.61 16 31 H 0.10 4.23 5.18 -2.91 -0.02 4.21 16 32 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 33 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.49 8.09 -2.39 -0.02 1.47 16 37 H 0.08 1.96 5.24 -2.39 -0.01 1.95 16 38 H 0.41 15.02 8.53 -92.71 -0.79 14.23 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.04 1.84 3.27 -2.39 -0.01 1.84 16 42 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 Total: -1.00 -70.63 348.78 4.61 -66.02 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.20 Total: 26.68 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 4.29 Total: -19.73 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -2.34 Total: -95.11 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: 0.78 Total: -23.14 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.67 Total: 45.29 kcal Total: -70.63 4.61 -66.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355381333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.345 kcal (2) G-P(sol) polarization free energy of solvation -70.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds