Wall clock time and date at job start Tue Mar 31 2020 10:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38365 * 119.85461 * 2 1 4 4 C 1.37962 * 120.14258 * 180.02562 * 3 2 1 5 5 C 1.39571 * 119.85342 * 359.97438 * 4 3 2 6 6 C 1.47827 * 120.14359 * 180.02562 * 5 4 3 7 7 C 1.35774 * 126.58250 * 0.02562 * 6 5 4 8 8 N 1.34137 * 107.51614 * 179.77973 * 7 6 5 9 9 C 1.30366 * 108.89965 * 0.36128 * 8 7 6 10 10 C 1.50701 * 125.47823 * 179.89637 * 9 8 7 11 11 C 1.52997 * 109.47212 * 89.69269 * 10 9 8 12 12 C 1.50697 * 109.47466 * 179.97438 * 11 10 9 13 13 O 1.21288 * 120.00038 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00369 * 180.02562 * 12 11 10 15 15 C 1.46505 * 120.00115 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.46848 * 180.02562 * 15 14 12 17 17 H 1.08009 * 120.00556 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00094 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00776 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99696 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47122 * 90.00224 * 20 18 16 22 22 H 1.48503 * 109.47152 * 209.99833 * 20 18 16 23 23 H 1.48497 * 109.47042 * 330.00196 * 20 18 16 24 24 O 1.33995 * 109.03819 * 359.62897 * 9 8 7 25 25 C 1.39577 * 119.71340 * 0.26904 * 5 4 3 26 26 C 1.37962 * 119.84818 * 359.45266 * 25 5 4 27 27 H 1.09003 * 109.46808 * 89.99947 * 1 2 3 28 28 H 1.08996 * 109.47585 * 210.00115 * 1 2 3 29 29 H 1.09007 * 109.46870 * 330.00772 * 1 2 3 30 30 H 1.07999 * 119.92840 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.07160 * 179.97438 * 4 3 2 32 32 H 1.08000 * 126.24063 * 359.97438 * 7 6 5 33 33 H 1.09002 * 109.47060 * 209.69324 * 10 9 8 34 34 H 1.09001 * 109.47380 * 329.69412 * 10 9 8 35 35 H 1.09002 * 109.47153 * 299.99998 * 11 10 9 36 36 H 1.08998 * 109.47533 * 59.99628 * 11 10 9 37 37 H 0.97003 * 119.99640 * 0.02562 * 14 12 11 38 38 H 1.09002 * 109.46801 * 299.99526 * 15 14 12 39 39 H 1.08992 * 109.46823 * 59.99976 * 15 14 12 40 40 H 0.96996 * 120.00667 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.07177 * 179.72448 * 25 5 4 42 42 H 1.08001 * 119.92076 * 180.26890 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5754 1.2070 -0.0005 5 6 4.2762 0.0000 -0.0005 6 6 5.7545 -0.0001 -0.0005 7 6 6.5637 1.0901 0.0000 8 7 7.8315 0.6519 0.0047 9 6 7.8276 -0.6517 -0.0007 10 6 9.0523 -1.5300 -0.0002 11 6 9.4664 -1.8269 1.4424 12 6 10.6907 -2.7056 1.4429 13 8 11.1838 -3.0593 0.3928 14 7 11.2377 -3.0986 2.6103 15 6 12.4282 -3.9524 2.6108 16 6 12.8352 -4.2459 4.0317 17 1 12.2645 -3.8370 4.8525 18 6 13.9362 -5.0365 4.2842 19 7 14.2919 -5.2923 5.5242 20 14 14.9229 -5.7444 2.8647 21 1 16.0009 -4.7947 2.4890 22 1 15.5244 -7.0382 3.2766 23 1 14.0278 -5.9630 1.7002 24 8 6.5597 -1.0851 -0.0008 25 6 3.5753 -1.2070 -0.0057 26 6 2.1957 -1.1999 0.0007 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 1.6522 2.1333 -0.0004 31 1 4.1118 2.1443 -0.0010 32 1 6.2448 2.1220 0.0000 33 1 8.8290 -2.4651 -0.5139 34 1 9.8664 -1.0186 -0.5140 35 1 9.6897 -0.8918 1.9561 36 1 8.6524 -2.3382 1.9562 37 1 10.8431 -2.8161 3.4502 38 1 12.2049 -4.8873 2.0967 39 1 13.2423 -3.4409 2.0975 40 1 15.0662 -5.8488 5.7018 41 1 4.1117 -2.1444 -0.0102 42 1 1.6521 -2.1332 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357409280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:21 Heat of formation + Delta-G solvation = -7.921958 kcal Electronic energy + Delta-G solvation = -23695.104683 eV Core-core repulsion = 20027.038488 eV Total energy + Delta-G solvation = -3668.066196 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.50212 -39.67416 -39.09484 -35.08659 -34.57066 -34.22470 -33.26500 -32.36028 -31.45695 -29.90680 -28.26186 -26.79997 -24.85464 -23.63361 -22.60359 -22.00406 -21.41849 -20.87882 -19.86508 -18.02229 -17.43743 -16.78091 -16.40245 -15.97057 -15.79404 -15.56477 -15.35348 -15.18489 -14.28436 -14.22285 -14.19109 -13.90637 -13.74523 -13.37920 -13.31026 -12.92334 -12.69043 -12.66461 -12.33153 -12.22474 -12.11154 -11.87893 -11.50501 -11.45968 -11.19588 -11.02784 -10.77714 -10.73232 -9.98873 -9.96412 -9.51712 -9.43398 -9.31638 -8.79588 -8.24651 -8.19858 -6.22629 -4.25278 0.26958 0.93940 1.60689 2.31129 2.48459 3.14998 3.26297 3.32831 3.36873 3.40777 3.66512 4.11749 4.22728 4.32367 4.37535 4.44423 4.53689 4.70375 4.79615 4.83750 4.91944 5.05053 5.11946 5.12689 5.18747 5.23234 5.29244 5.43370 5.50595 5.59331 5.60530 5.64144 5.79487 5.87574 5.95636 6.09402 6.09728 6.11455 6.46170 6.77790 7.04799 7.17294 7.36627 7.52520 8.09327 8.47666 8.72283 8.86842 9.37098 10.89264 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.027600 B = 0.001910 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.244297 B =14655.100114 C =15082.563837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 C -0.116 4.116 4 C -0.093 4.093 5 C -0.016 4.016 6 C -0.015 4.015 7 C -0.017 4.017 8 N -0.479 5.479 9 C 0.208 3.792 10 C -0.008 4.008 11 C -0.139 4.139 12 C 0.504 3.496 13 O -0.559 6.559 14 N -0.703 5.703 15 C 0.219 3.781 16 C -0.545 4.545 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.892 5.892 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.261 1.261 24 O -0.193 6.193 25 C -0.096 4.096 26 C -0.116 4.116 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.185 0.815 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.398 0.602 38 H 0.026 0.974 39 H 0.022 0.978 40 H 0.268 0.732 41 H 0.129 0.871 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.645 13.099 -11.445 32.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C -0.134 4.134 4 C -0.111 4.111 5 C -0.017 4.017 6 C -0.068 4.068 7 C -0.158 4.158 8 N -0.207 5.207 9 C 0.003 3.997 10 C -0.047 4.047 11 C -0.180 4.180 12 C 0.289 3.711 13 O -0.439 6.439 14 N -0.351 5.351 15 C 0.097 3.903 16 C -0.583 4.583 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.529 5.529 20 Si 0.704 3.296 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.185 1.185 24 O -0.081 6.081 25 C -0.114 4.114 26 C -0.134 4.134 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.202 0.798 33 H 0.121 0.879 34 H 0.135 0.865 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.232 0.768 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.078 0.922 41 H 0.147 0.853 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -26.576 13.029 -12.047 31.956 hybrid contribution -0.172 -0.603 -0.074 0.632 sum -26.748 12.426 -12.121 31.887 Atomic orbital electron populations 1.20838 0.90862 1.03087 1.02570 1.20096 0.96414 0.93116 0.98409 1.20937 0.93475 0.97900 1.01117 1.21025 0.94157 0.96574 0.99361 1.17602 0.85938 0.94497 1.03620 1.21376 0.91367 0.84837 1.09212 1.23327 0.87552 0.99976 1.04917 1.70415 1.22816 1.09070 1.18405 1.26512 0.84014 0.90316 0.98847 1.19899 0.88531 0.98038 0.98206 1.21637 0.97835 1.01529 0.96959 1.20276 0.85046 0.81228 0.84598 1.90669 1.63959 1.57848 1.31427 1.46185 1.30751 1.50831 1.07364 1.19517 0.82797 0.89670 0.98292 1.21098 1.13734 1.32956 0.90526 0.90229 1.24802 0.96697 0.95310 0.95821 1.69878 1.26640 1.37663 1.18731 0.86809 0.80881 0.78966 0.82981 1.19825 1.20894 1.18498 1.84450 1.17877 1.35906 1.69831 1.21302 0.94363 0.97447 0.98316 1.21004 0.93704 0.97937 1.00800 0.90894 0.91294 0.91303 0.85272 0.85220 0.79770 0.87917 0.86493 0.88214 0.88694 0.76848 0.95606 0.96021 0.92238 0.85269 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 10.01 36.00 0.36 -0.12 16 2 C -0.08 -0.53 5.89 -104.53 -0.62 -1.14 16 3 C -0.12 -0.75 9.68 -39.64 -0.38 -1.13 16 4 C -0.09 -0.70 9.57 -39.19 -0.38 -1.07 16 5 C -0.02 -0.15 5.87 -104.98 -0.62 -0.77 16 6 C -0.02 -0.17 7.07 -36.54 -0.26 -0.43 16 7 C -0.02 -0.20 11.29 -17.43 -0.20 -0.39 16 8 N -0.48 -6.46 11.27 -10.82 -0.12 -6.58 16 9 C 0.21 2.70 7.58 -12.90 -0.10 2.60 16 10 C -0.01 -0.10 5.13 -27.88 -0.14 -0.25 16 11 C -0.14 -1.79 5.68 -27.89 -0.16 -1.95 16 12 C 0.50 9.07 7.83 -10.99 -0.09 8.99 16 13 O -0.56 -12.00 15.98 5.55 0.09 -11.91 16 14 N -0.70 -13.87 5.55 -61.47 -0.34 -14.21 16 15 C 0.22 5.33 4.50 -5.19 -0.02 5.31 16 16 C -0.55 -14.88 9.83 -34.44 -0.34 -15.22 16 17 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.42 13.96 55.43 0.77 -25.64 16 20 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 24 O -0.19 -2.47 10.59 4.24 0.04 -2.42 16 25 C -0.10 -0.86 9.73 -39.18 -0.38 -1.24 16 26 C -0.12 -0.85 9.68 -39.64 -0.38 -1.24 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 29 H 0.07 0.23 8.08 -51.92 -0.42 -0.19 16 30 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 31 H 0.13 0.71 7.04 -52.49 -0.37 0.34 16 32 H 0.19 1.44 7.30 -52.49 -0.38 1.06 16 33 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.12 1.50 8.10 -51.93 -0.42 1.08 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.40 6.90 8.32 -40.82 -0.34 6.56 16 38 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 39 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.13 1.13 7.95 -52.49 -0.42 0.71 16 42 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 364.82 15.07 5.50 5.50 Total: -1.00 -33.64 364.82 -8.17 -41.81 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.65 Total: 2.77 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -3.80 Total: -5.98 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.31 Total: -46.44 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.13 Total: -14.33 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.64 -8.17 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357409280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.889 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds