Wall clock time and date at job start Tue Mar 31 2020 10:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38365 * 119.85461 * 2 1 4 4 C 1.37962 * 120.14258 * 180.02562 * 3 2 1 5 5 C 1.39571 * 119.85342 * 359.97438 * 4 3 2 6 6 C 1.47827 * 120.14359 * 180.02562 * 5 4 3 7 7 C 1.35774 * 126.58250 * 0.02562 * 6 5 4 8 8 N 1.34137 * 107.51614 * 179.77973 * 7 6 5 9 9 C 1.30366 * 108.89965 * 0.36128 * 8 7 6 10 10 C 1.50701 * 125.47823 * 179.89637 * 9 8 7 11 11 C 1.52997 * 109.47212 * 89.69269 * 10 9 8 12 12 C 1.50697 * 109.47466 * 179.97438 * 11 10 9 13 13 O 1.21288 * 120.00038 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00369 * 180.02562 * 12 11 10 15 15 C 1.46505 * 120.00115 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.46848 * 180.02562 * 15 14 12 17 17 H 1.08009 * 120.00556 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00094 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00776 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99696 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47122 * 90.00224 * 20 18 16 22 22 H 1.48503 * 109.47152 * 209.99833 * 20 18 16 23 23 H 1.48497 * 109.47042 * 330.00196 * 20 18 16 24 24 O 1.33995 * 109.03819 * 359.62897 * 9 8 7 25 25 C 1.39577 * 119.71340 * 0.26904 * 5 4 3 26 26 C 1.37962 * 119.84818 * 359.45266 * 25 5 4 27 27 H 1.09003 * 109.46808 * 89.99947 * 1 2 3 28 28 H 1.08996 * 109.47585 * 210.00115 * 1 2 3 29 29 H 1.09007 * 109.46870 * 330.00772 * 1 2 3 30 30 H 1.07999 * 119.92840 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.07160 * 179.97438 * 4 3 2 32 32 H 1.08000 * 126.24063 * 359.97438 * 7 6 5 33 33 H 1.09002 * 109.47060 * 209.69324 * 10 9 8 34 34 H 1.09001 * 109.47380 * 329.69412 * 10 9 8 35 35 H 1.09002 * 109.47153 * 299.99998 * 11 10 9 36 36 H 1.08998 * 109.47533 * 59.99628 * 11 10 9 37 37 H 0.97003 * 119.99640 * 0.02562 * 14 12 11 38 38 H 1.09002 * 109.46801 * 299.99526 * 15 14 12 39 39 H 1.08992 * 109.46823 * 59.99976 * 15 14 12 40 40 H 0.96996 * 120.00667 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.07177 * 179.72448 * 25 5 4 42 42 H 1.08001 * 119.92076 * 180.26890 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5754 1.2070 -0.0005 5 6 4.2762 0.0000 -0.0005 6 6 5.7545 -0.0001 -0.0005 7 6 6.5637 1.0901 0.0000 8 7 7.8315 0.6519 0.0047 9 6 7.8276 -0.6517 -0.0007 10 6 9.0523 -1.5300 -0.0002 11 6 9.4664 -1.8269 1.4424 12 6 10.6907 -2.7056 1.4429 13 8 11.1838 -3.0593 0.3928 14 7 11.2377 -3.0986 2.6103 15 6 12.4282 -3.9524 2.6108 16 6 12.8352 -4.2459 4.0317 17 1 12.2645 -3.8370 4.8525 18 6 13.9362 -5.0365 4.2842 19 7 14.2919 -5.2923 5.5242 20 14 14.9229 -5.7444 2.8647 21 1 16.0009 -4.7947 2.4890 22 1 15.5244 -7.0382 3.2766 23 1 14.0278 -5.9630 1.7002 24 8 6.5597 -1.0851 -0.0008 25 6 3.5753 -1.2070 -0.0057 26 6 2.1957 -1.1999 0.0007 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 1.6522 2.1333 -0.0004 31 1 4.1118 2.1443 -0.0010 32 1 6.2448 2.1220 0.0000 33 1 8.8290 -2.4651 -0.5139 34 1 9.8664 -1.0186 -0.5140 35 1 9.6897 -0.8918 1.9561 36 1 8.6524 -2.3382 1.9562 37 1 10.8431 -2.8161 3.4502 38 1 12.2049 -4.8873 2.0967 39 1 13.2423 -3.4409 2.0975 40 1 15.0662 -5.8488 5.7018 41 1 4.1117 -2.1444 -0.0102 42 1 1.6521 -2.1332 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357409280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:21 Heat of formation + Delta-G solvation = -30.909710 kcal Electronic energy + Delta-G solvation = -23696.101507 eV Core-core repulsion = 20027.038488 eV Total energy + Delta-G solvation = -3669.063020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.40260 -40.63743 -40.20366 -36.29152 -35.96825 -35.19529 -34.41970 -34.05423 -32.00269 -30.85622 -29.86176 -27.65774 -25.93019 -24.34018 -23.86785 -23.17194 -22.28915 -21.70829 -21.38403 -19.23882 -18.72324 -17.98900 -17.57318 -17.15896 -16.98672 -16.55856 -16.31739 -16.17999 -15.94094 -15.14159 -14.90466 -14.79157 -14.65307 -14.59423 -14.40126 -14.12534 -13.97185 -13.76631 -13.45554 -13.11412 -13.01432 -12.98967 -12.70160 -12.45300 -12.42012 -12.22136 -11.97443 -11.92784 -11.65811 -11.63598 -10.93235 -10.91554 -10.60126 -9.98043 -9.93804 -8.96536 -8.39787 -6.47114 -0.43123 0.39579 0.82379 1.33614 1.35743 1.44142 1.48120 1.62138 1.69384 2.28337 2.42425 2.79039 2.95647 3.00310 3.51568 3.71036 3.83319 3.89874 3.97702 4.01622 4.05926 4.10187 4.31836 4.40662 4.46568 4.59004 4.68189 4.77440 4.80696 4.82590 4.86622 4.87335 4.92937 5.04280 5.09530 5.20858 5.25343 5.26553 5.37855 5.47046 5.50920 5.61669 5.95082 6.07753 6.54058 6.61935 6.81562 7.15019 7.37623 8.74930 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.027600 B = 0.001910 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.244297 B =14655.100114 C =15082.563837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 C -0.119 4.119 4 C -0.092 4.092 5 C -0.044 4.044 6 C -0.014 4.014 7 C -0.028 4.028 8 N -0.497 5.497 9 C 0.196 3.804 10 C -0.002 4.002 11 C -0.122 4.122 12 C 0.506 3.494 13 O -0.593 6.593 14 N -0.706 5.706 15 C 0.230 3.770 16 C -0.549 4.549 17 H 0.059 0.941 18 C 0.025 3.975 19 N -0.932 5.932 20 Si 0.939 3.061 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.258 1.258 24 O -0.204 6.204 25 C -0.112 4.112 26 C -0.126 4.126 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.214 0.786 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.409 0.591 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.272 0.728 41 H 0.121 0.879 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.766 14.342 -12.371 35.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.080 4.080 3 C -0.137 4.137 4 C -0.110 4.110 5 C -0.044 4.044 6 C -0.067 4.067 7 C -0.168 4.168 8 N -0.226 5.226 9 C -0.009 4.009 10 C -0.040 4.040 11 C -0.162 4.162 12 C 0.294 3.706 13 O -0.474 6.474 14 N -0.355 5.355 15 C 0.106 3.894 16 C -0.587 4.587 17 H 0.077 0.923 18 C -0.175 4.175 19 N -0.571 5.571 20 Si 0.762 3.238 21 H -0.190 1.190 22 H -0.199 1.199 23 H -0.183 1.183 24 O -0.092 6.092 25 C -0.130 4.130 26 C -0.143 4.143 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.174 0.826 31 H 0.167 0.833 32 H 0.231 0.769 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.245 0.755 38 H 0.033 0.967 39 H 0.032 0.968 40 H 0.081 0.919 41 H 0.139 0.861 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -28.730 14.289 -12.965 34.608 hybrid contribution 0.300 -0.927 0.232 1.002 sum -28.430 13.362 -12.733 33.896 Atomic orbital electron populations 1.20903 0.88975 1.04033 1.03401 1.20483 0.97872 0.92856 0.96757 1.21309 0.93202 0.99033 1.00158 1.21317 0.94807 0.96556 0.98327 1.17780 0.85088 0.95641 1.05906 1.21847 0.92197 0.84516 1.08092 1.23788 0.86673 1.01289 1.05016 1.70390 1.24157 1.09356 1.18720 1.26390 0.84104 0.90302 1.00095 1.19776 0.88461 0.98066 0.97725 1.21546 0.95663 1.01140 0.97888 1.21032 0.85695 0.80680 0.83226 1.90653 1.65203 1.59075 1.32513 1.46048 1.29900 1.50735 1.08818 1.19125 0.84348 0.89942 0.95970 1.21321 1.13424 1.32437 0.91490 0.92332 1.25625 0.97913 0.95804 0.98167 1.69983 1.27571 1.38797 1.20705 0.85837 0.79473 0.78643 0.79817 1.19016 1.19896 1.18264 1.84435 1.18025 1.36718 1.70009 1.21389 0.95284 0.97182 0.99156 1.21236 0.93151 0.99214 1.00746 0.89980 0.90733 0.90057 0.82618 0.83293 0.76924 0.87824 0.87012 0.86548 0.86499 0.75485 0.96681 0.96836 0.91864 0.86067 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.01 71.24 0.71 0.08 16 2 C -0.08 -0.86 5.89 -19.81 -0.12 -0.98 16 3 C -0.12 -1.22 9.68 22.23 0.22 -1.00 16 4 C -0.09 -1.20 9.57 22.53 0.22 -0.98 16 5 C -0.04 -0.80 5.87 -20.10 -0.12 -0.92 16 6 C -0.01 -0.31 7.07 24.24 0.17 -0.14 16 7 C -0.03 -0.60 11.29 83.77 0.95 0.35 16 8 N -0.50 -13.01 11.27 -302.86 -3.41 -16.42 16 9 C 0.20 4.97 7.58 88.33 0.67 5.64 16 10 C 0.00 -0.05 5.13 29.85 0.15 0.11 16 11 C -0.12 -2.99 5.68 29.85 0.17 -2.82 16 12 C 0.51 17.85 7.83 87.66 0.69 18.54 16 13 O -0.59 -25.25 15.98 -3.05 -0.05 -25.30 16 14 N -0.71 -27.52 5.55 -466.79 -2.59 -30.11 16 15 C 0.23 11.16 4.50 85.63 0.38 11.55 16 16 C -0.55 -30.28 9.83 25.60 0.25 -30.03 16 17 H 0.06 3.40 7.84 -2.91 -0.02 3.37 16 18 C 0.03 1.42 5.47 84.65 0.46 1.89 16 19 N -0.93 -55.77 13.96 21.45 0.30 -55.47 16 20 Si 0.94 43.99 27.47 68.60 1.88 45.87 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.26 -11.93 6.54 99.48 0.65 -11.28 16 24 O -0.20 -5.18 10.59 -7.75 -0.08 -5.27 16 25 C -0.11 -1.98 9.73 22.53 0.22 -1.76 16 26 C -0.13 -1.69 9.68 22.23 0.22 -1.47 16 27 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.07 0.34 8.08 -2.39 -0.02 0.32 16 29 H 0.08 0.26 8.08 -2.38 -0.02 0.24 16 30 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 31 H 0.15 1.23 7.04 -2.91 -0.02 1.21 16 32 H 0.21 2.89 7.30 -2.91 -0.02 2.87 16 33 H 0.10 2.48 8.10 -2.39 -0.02 2.46 16 34 H 0.11 2.83 8.10 -2.39 -0.02 2.81 16 35 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.41 13.98 8.32 -92.71 -0.77 13.21 16 38 H 0.02 0.77 7.20 -2.39 -0.02 0.76 16 39 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 40 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.12 2.20 7.95 -2.91 -0.02 2.18 16 42 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -72.62 364.82 1.51 -71.11 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.22 Total: 17.52 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 5.24 Total: -1.93 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -5.70 Total: -102.01 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.13 Total: -30.56 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.87 kcal Total: -72.62 1.51 -71.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357409280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.205 kcal (2) G-P(sol) polarization free energy of solvation -72.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds