Wall clock time and date at job start Tue Mar 31 2020 11:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.67572 * 2 1 4 4 C 1.53410 * 109.68250 * 120.51149 * 2 1 3 5 5 C 1.53075 * 108.27433 * 54.99169 * 4 2 1 6 6 H 1.09003 * 109.44042 * 288.23771 * 5 4 2 7 7 C 1.50704 * 109.43921 * 168.32075 * 5 4 2 8 8 O 1.21297 * 119.99885 * 265.79113 * 7 5 4 9 9 N 1.34779 * 120.00272 * 85.79247 * 7 5 4 10 10 C 1.37095 * 119.99999 * 184.03115 * 9 7 5 11 11 H 1.07994 * 120.00054 * 21.27206 * 10 9 7 12 12 C 1.38954 * 119.99520 * 200.99168 * 10 9 7 13 13 N 1.31405 * 120.00314 * 9.78185 * 12 10 9 14 14 Si 1.86803 * 119.99759 * 189.77652 * 12 10 9 15 15 H 1.48500 * 109.47243 * 90.00111 * 14 12 10 16 16 H 1.48500 * 109.47382 * 210.00329 * 14 12 10 17 17 H 1.48497 * 109.47148 * 330.00427 * 14 12 10 18 18 C 1.46507 * 119.99694 * 4.02720 * 9 7 5 19 19 C 1.47199 * 109.46792 * 83.88995 * 18 9 7 20 20 N 5.91238 * 57.83603 * 134.63011 * 2 1 3 21 21 C 1.50765 * 109.66852 * 48.25882 * 5 4 2 22 22 C 1.38511 * 118.75757 * 162.22192 * 21 5 4 23 23 C 1.38104 * 120.31344 * 179.83906 * 22 21 5 24 24 C 1.38288 * 119.98141 * 359.97438 * 23 22 21 25 25 C 1.37962 * 119.96454 * 0.08650 * 24 23 22 26 26 C 1.38375 * 121.40739 * 342.20409 * 21 5 4 27 27 O 1.35846 * 121.80713 * 0.31241 * 26 21 5 28 28 H 1.09001 * 109.47675 * 299.48559 * 1 2 3 29 29 H 1.09000 * 109.47369 * 59.48369 * 1 2 3 30 30 H 1.09000 * 109.47203 * 179.48521 * 1 2 3 31 31 H 1.09007 * 109.47051 * 180.51439 * 3 2 1 32 32 H 1.08995 * 109.47249 * 300.51392 * 3 2 1 33 33 H 1.09001 * 109.47348 * 60.51378 * 3 2 1 34 34 H 1.08996 * 109.70448 * 295.29156 * 4 2 1 35 35 H 1.09006 * 109.70138 * 174.67964 * 4 2 1 36 36 H 0.97005 * 119.99890 * 179.97438 * 13 12 10 37 37 H 1.08992 * 109.46752 * 203.88715 * 18 9 7 38 38 H 1.09003 * 109.47024 * 323.89002 * 18 9 7 39 39 H 1.07999 * 119.83886 * 359.82394 * 22 21 5 40 40 H 1.08005 * 120.00712 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.01496 * 180.11265 * 24 23 22 42 42 H 1.07997 * 119.89619 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0451 1.4407 0.0000 4 6 2.0466 -0.7334 1.2444 5 6 1.4231 -2.1311 1.2713 6 1 0.3651 -2.0517 1.5211 7 6 2.1215 -2.9720 2.3088 8 8 3.0441 -3.6904 1.9864 9 7 1.7210 -2.9258 3.5949 10 6 2.4078 -3.6265 4.5523 11 1 3.4300 -3.9255 4.3734 12 6 1.7906 -3.9468 5.7554 13 7 0.4997 -3.7518 5.9039 14 14 2.7962 -4.6548 7.1615 15 1 3.3126 -3.5485 8.0069 16 1 1.9391 -5.5469 7.9829 17 1 3.9364 -5.4318 6.6125 18 6 0.5516 -2.1267 3.9696 19 6 -0.6727 -2.9109 3.7394 20 7 -1.6175 -3.5161 3.5618 21 6 1.5710 -2.7788 -0.0820 22 6 1.4213 -4.1521 -0.1835 23 6 1.5468 -4.7784 -1.4080 24 6 1.8226 -4.0336 -2.5400 25 6 1.9740 -2.6656 -2.4449 26 6 1.8505 -2.0314 -1.2125 27 8 2.0109 -0.6836 -1.1581 28 1 -0.3634 0.5058 0.8945 29 1 -0.3634 0.5218 -0.8853 30 1 -0.3633 -1.0276 -0.0092 31 1 3.1351 1.4368 -0.0092 32 1 1.6761 1.9585 -0.8853 33 1 1.6911 1.9532 0.8945 34 1 1.7576 -0.1847 2.1408 35 1 3.1325 -0.8163 1.1977 36 1 0.0688 -3.9758 6.7436 37 1 0.6180 -1.8578 5.0237 38 1 0.5217 -1.2205 3.3645 39 1 1.2058 -4.7358 0.6992 40 1 1.4296 -5.8495 -1.4813 41 1 1.9191 -4.5226 -3.4982 42 1 2.1890 -2.0850 -3.3298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413298927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:10 Heat of formation + Delta-G solvation = -9.329124 kcal Electronic energy + Delta-G solvation = -27217.575364 eV Core-core repulsion = 23549.448149 eV Total energy + Delta-G solvation = -3668.127215 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.05213 -38.73876 -37.61414 -35.86503 -34.60646 -34.27079 -32.42478 -31.71269 -29.91533 -28.39392 -27.51498 -27.41157 -25.47029 -23.90083 -22.52913 -22.18749 -19.62363 -18.59823 -17.97253 -17.41536 -16.76443 -16.29965 -16.10116 -15.33480 -15.00227 -14.82934 -14.37097 -14.22771 -13.77208 -13.64195 -13.31286 -13.06364 -13.01088 -12.89855 -12.70374 -12.21187 -12.19231 -12.15698 -11.88457 -11.84756 -11.58392 -11.41651 -11.24061 -11.20599 -11.10257 -10.70369 -10.57040 -10.52260 -10.44292 -10.40407 -10.19412 -9.30719 -8.61024 -8.43043 -8.09786 -7.84794 -6.51929 -4.10803 1.63924 1.76905 3.06177 3.18465 3.22430 3.35098 3.46578 3.69740 3.94180 4.01629 4.11992 4.59014 4.73416 4.76294 4.82013 4.88774 5.01861 5.10166 5.23932 5.29915 5.31747 5.46747 5.51673 5.56172 5.64529 5.67901 5.71065 5.78914 5.81742 5.87605 6.02365 6.02425 6.14080 6.19496 6.28594 6.35060 6.56630 6.58659 6.81110 6.92330 7.09011 7.39957 7.71773 7.85214 8.22940 8.69605 8.93942 9.12320 9.66447 10.52295 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.004993 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.096736 B = 5606.296670 C = 6144.996227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.114 3.886 3 C -0.136 4.136 4 C -0.136 4.136 5 C -0.064 4.064 6 H 0.092 0.908 7 C 0.466 3.534 8 O -0.558 6.558 9 N -0.444 5.444 10 C -0.305 4.305 11 H 0.107 0.893 12 C 0.030 3.970 13 N -0.889 5.889 14 Si 0.933 3.067 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.219 3.781 19 C 0.247 3.753 20 N -0.474 5.474 21 C -0.129 4.129 22 C -0.050 4.050 23 C -0.158 4.158 24 C -0.091 4.091 25 C -0.161 4.161 26 C 0.137 3.863 27 O -0.311 6.311 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.274 0.726 37 H 0.137 0.863 38 H 0.076 0.924 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 9.808 -9.646 13.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.076 3.924 3 C -0.193 4.193 4 C -0.173 4.173 5 C -0.085 4.085 6 H 0.110 0.890 7 C 0.254 3.746 8 O -0.439 6.439 9 N -0.164 5.164 10 C -0.432 4.432 11 H 0.124 0.876 12 C -0.172 4.172 13 N -0.529 5.529 14 Si 0.760 3.240 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.194 1.194 18 C 0.092 3.908 19 C -0.071 4.071 20 N -0.155 5.155 21 C -0.130 4.130 22 C -0.068 4.068 23 C -0.176 4.176 24 C -0.109 4.109 25 C -0.179 4.179 26 C 0.092 3.908 27 O -0.226 6.226 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.155 0.845 38 H 0.094 0.906 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.658 8.640 -10.016 13.244 hybrid contribution 0.525 -0.422 1.269 1.436 sum -0.132 8.219 -8.748 12.004 Atomic orbital electron populations 1.22448 0.94544 1.03456 1.03033 1.21857 0.93784 0.92483 0.84239 1.21764 1.02259 0.92387 1.02905 1.22246 1.02310 0.94377 0.98416 1.20210 1.00939 0.94991 0.92393 0.88976 1.19810 0.87128 0.85412 0.82295 1.90582 1.31533 1.42483 1.79333 1.43590 1.24594 1.42509 1.05718 1.19753 0.97433 1.32494 0.93519 0.87573 1.25329 0.95595 0.96734 0.99559 1.69719 1.08401 1.47911 1.26888 0.85794 0.79262 0.78863 0.80086 1.20140 1.20958 1.19359 1.18859 0.78162 0.89212 1.04599 1.29327 0.93834 0.93574 0.90394 1.80909 1.13459 1.08864 1.12225 1.19325 1.06383 0.94420 0.92870 1.20970 0.94886 0.93274 0.97644 1.20966 1.04219 0.99807 0.92656 1.20819 0.98763 0.92958 0.98365 1.20425 1.07621 0.94671 0.95212 1.18561 0.96792 0.82303 0.93095 1.85965 1.77132 1.16873 1.42584 0.90677 0.91604 0.91553 0.91445 0.91574 0.90258 0.89269 0.89711 0.91537 0.84514 0.90604 0.85929 0.86263 0.85947 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 8.14 37.15 0.30 -1.75 16 2 C 0.11 1.45 1.13 -90.41 -0.10 1.35 16 3 C -0.14 -1.31 8.88 37.16 0.33 -0.98 16 4 C -0.14 -1.98 4.27 -26.48 -0.11 -2.09 16 5 C -0.06 -1.14 1.23 -92.85 -0.11 -1.25 16 6 H 0.09 1.58 5.00 -51.93 -0.26 1.32 16 7 C 0.47 10.34 5.81 -10.98 -0.06 10.27 16 8 O -0.56 -14.41 14.89 5.54 0.08 -14.33 16 9 N -0.44 -10.03 2.60 -117.93 -0.31 -10.33 16 10 C -0.30 -7.63 9.31 -14.93 -0.14 -7.77 16 11 H 0.11 2.81 7.41 -52.49 -0.39 2.42 16 12 C 0.03 0.73 5.13 -17.47 -0.09 0.64 16 13 N -0.89 -21.77 8.99 55.50 0.50 -21.27 16 14 Si 0.93 19.50 29.56 -169.99 -5.03 14.48 16 15 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 C 0.22 4.23 4.78 -6.83 -0.03 4.20 16 19 C 0.25 5.35 12.80 -20.76 -0.27 5.09 16 20 N -0.47 -11.10 18.54 42.15 0.78 -10.32 16 21 C -0.13 -2.36 4.54 -104.44 -0.47 -2.83 16 22 C -0.05 -0.94 8.36 -39.53 -0.33 -1.27 16 23 C -0.16 -2.54 10.04 -39.61 -0.40 -2.94 16 24 C -0.09 -1.29 10.04 -39.66 -0.40 -1.69 16 25 C -0.16 -2.39 9.94 -39.34 -0.39 -2.79 16 26 C 0.14 2.29 6.02 -39.19 -0.24 2.05 16 27 O -0.31 -4.73 9.67 -19.26 -0.19 -4.92 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.90 5.88 -51.93 -0.31 0.59 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.09 6.98 -51.93 -0.36 0.73 16 35 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 36 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 37 H 0.14 2.72 6.30 -51.93 -0.33 2.40 16 38 H 0.08 1.13 5.55 -51.93 -0.29 0.84 16 39 H 0.12 2.59 7.17 -52.49 -0.38 2.21 16 40 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 41 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 341.58 15.07 5.15 5.15 Total: -1.00 -30.56 341.58 -6.77 -37.33 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.25 Total: 5.98 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.52 Total: -1.76 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.97 Total: -41.92 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.10 Total: -19.25 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.56 -6.77 -37.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413298927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.001 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds