Wall clock time and date at job start Tue Mar 31 2020 11:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.67572 * 2 1 4 4 C 1.53410 * 109.68250 * 120.51149 * 2 1 3 5 5 C 1.53075 * 108.27433 * 54.99169 * 4 2 1 6 6 H 1.09003 * 109.44042 * 288.23771 * 5 4 2 7 7 C 1.50704 * 109.43921 * 168.32075 * 5 4 2 8 8 O 1.21297 * 119.99885 * 265.79113 * 7 5 4 9 9 N 1.34779 * 120.00272 * 85.79247 * 7 5 4 10 10 C 1.37095 * 119.99999 * 184.03115 * 9 7 5 11 11 H 1.07994 * 120.00054 * 21.27206 * 10 9 7 12 12 C 1.38954 * 119.99520 * 200.99168 * 10 9 7 13 13 N 1.31405 * 120.00314 * 9.78185 * 12 10 9 14 14 Si 1.86803 * 119.99759 * 189.77652 * 12 10 9 15 15 H 1.48500 * 109.47243 * 90.00111 * 14 12 10 16 16 H 1.48500 * 109.47382 * 210.00329 * 14 12 10 17 17 H 1.48497 * 109.47148 * 330.00427 * 14 12 10 18 18 C 1.46507 * 119.99694 * 4.02720 * 9 7 5 19 19 C 1.47199 * 109.46792 * 83.88995 * 18 9 7 20 20 N 5.91238 * 57.83603 * 134.63011 * 2 1 3 21 21 C 1.50765 * 109.66852 * 48.25882 * 5 4 2 22 22 C 1.38511 * 118.75757 * 162.22192 * 21 5 4 23 23 C 1.38104 * 120.31344 * 179.83906 * 22 21 5 24 24 C 1.38288 * 119.98141 * 359.97438 * 23 22 21 25 25 C 1.37962 * 119.96454 * 0.08650 * 24 23 22 26 26 C 1.38375 * 121.40739 * 342.20409 * 21 5 4 27 27 O 1.35846 * 121.80713 * 0.31241 * 26 21 5 28 28 H 1.09001 * 109.47675 * 299.48559 * 1 2 3 29 29 H 1.09000 * 109.47369 * 59.48369 * 1 2 3 30 30 H 1.09000 * 109.47203 * 179.48521 * 1 2 3 31 31 H 1.09007 * 109.47051 * 180.51439 * 3 2 1 32 32 H 1.08995 * 109.47249 * 300.51392 * 3 2 1 33 33 H 1.09001 * 109.47348 * 60.51378 * 3 2 1 34 34 H 1.08996 * 109.70448 * 295.29156 * 4 2 1 35 35 H 1.09006 * 109.70138 * 174.67964 * 4 2 1 36 36 H 0.97005 * 119.99890 * 179.97438 * 13 12 10 37 37 H 1.08992 * 109.46752 * 203.88715 * 18 9 7 38 38 H 1.09003 * 109.47024 * 323.89002 * 18 9 7 39 39 H 1.07999 * 119.83886 * 359.82394 * 22 21 5 40 40 H 1.08005 * 120.00712 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.01496 * 180.11265 * 24 23 22 42 42 H 1.07997 * 119.89619 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0451 1.4407 0.0000 4 6 2.0466 -0.7334 1.2444 5 6 1.4231 -2.1311 1.2713 6 1 0.3651 -2.0517 1.5211 7 6 2.1215 -2.9720 2.3088 8 8 3.0441 -3.6904 1.9864 9 7 1.7210 -2.9258 3.5949 10 6 2.4078 -3.6265 4.5523 11 1 3.4300 -3.9255 4.3734 12 6 1.7906 -3.9468 5.7554 13 7 0.4997 -3.7518 5.9039 14 14 2.7962 -4.6548 7.1615 15 1 3.3126 -3.5485 8.0069 16 1 1.9391 -5.5469 7.9829 17 1 3.9364 -5.4318 6.6125 18 6 0.5516 -2.1267 3.9696 19 6 -0.6727 -2.9109 3.7394 20 7 -1.6175 -3.5161 3.5618 21 6 1.5710 -2.7788 -0.0820 22 6 1.4213 -4.1521 -0.1835 23 6 1.5468 -4.7784 -1.4080 24 6 1.8226 -4.0336 -2.5400 25 6 1.9740 -2.6656 -2.4449 26 6 1.8505 -2.0314 -1.2125 27 8 2.0109 -0.6836 -1.1581 28 1 -0.3634 0.5058 0.8945 29 1 -0.3634 0.5218 -0.8853 30 1 -0.3633 -1.0276 -0.0092 31 1 3.1351 1.4368 -0.0092 32 1 1.6761 1.9585 -0.8853 33 1 1.6911 1.9532 0.8945 34 1 1.7576 -0.1847 2.1408 35 1 3.1325 -0.8163 1.1977 36 1 0.0688 -3.9758 6.7436 37 1 0.6180 -1.8578 5.0237 38 1 0.5217 -1.2205 3.3645 39 1 1.2058 -4.7358 0.6992 40 1 1.4296 -5.8495 -1.4813 41 1 1.9191 -4.5226 -3.4982 42 1 2.1890 -2.0850 -3.3298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413298927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:09 Heat of formation + Delta-G solvation = -26.476965 kcal Electronic energy + Delta-G solvation = -27218.318950 eV Core-core repulsion = 23549.448149 eV Total energy + Delta-G solvation = -3668.870801 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.31720 -40.37180 -38.79267 -37.64583 -36.26765 -35.68453 -33.84393 -33.31180 -31.17208 -29.65554 -29.16428 -28.24938 -27.09220 -25.33794 -23.77450 -23.42306 -21.13522 -19.90057 -19.74911 -18.71842 -18.35049 -17.91794 -17.29806 -16.66379 -16.49667 -16.13922 -15.93303 -15.59298 -15.17623 -14.98685 -14.82739 -14.63767 -14.41164 -14.14097 -13.93176 -13.71780 -13.53870 -13.19707 -13.14891 -13.06729 -12.95368 -12.90757 -12.77440 -12.46694 -12.42922 -12.34118 -12.18786 -12.14576 -11.82888 -11.57090 -11.43006 -11.12964 -10.36238 -9.95354 -9.73191 -9.08454 -8.39127 -6.04575 0.37852 0.49662 1.37164 1.44961 1.54557 1.74772 1.98277 2.21559 2.28292 2.32439 2.75570 2.99780 3.09215 3.47900 3.50360 3.65978 3.73241 3.86811 3.98177 4.05899 4.19186 4.20057 4.30649 4.44632 4.49864 4.53775 4.62887 4.74694 4.78361 4.90643 4.91025 4.95872 5.01980 5.07667 5.08841 5.26152 5.33031 5.41682 5.43147 5.54333 5.63349 5.88882 6.01537 6.37777 6.54446 6.95226 7.08148 7.29477 7.86660 8.62019 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.004993 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.096736 B = 5606.296670 C = 6144.996227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.111 3.889 3 C -0.132 4.132 4 C -0.133 4.133 5 C -0.053 4.053 6 H 0.097 0.903 7 C 0.463 3.537 8 O -0.604 6.604 9 N -0.454 5.454 10 C -0.331 4.331 11 H 0.081 0.919 12 C 0.004 3.996 13 N -0.900 5.900 14 Si 0.990 3.010 15 H -0.257 1.257 16 H -0.285 1.285 17 H -0.281 1.281 18 C 0.221 3.779 19 C 0.258 3.742 20 N -0.508 5.508 21 C -0.152 4.152 22 C -0.082 4.082 23 C -0.167 4.167 24 C -0.080 4.080 25 C -0.161 4.161 26 C 0.131 3.869 27 O -0.315 6.315 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.275 0.725 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.084 0.916 40 H 0.134 0.866 41 H 0.164 0.836 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 12.114 -10.767 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.074 3.926 3 C -0.189 4.189 4 C -0.171 4.171 5 C -0.075 4.075 6 H 0.115 0.885 7 C 0.252 3.748 8 O -0.488 6.488 9 N -0.173 5.173 10 C -0.458 4.458 11 H 0.099 0.901 12 C -0.197 4.197 13 N -0.540 5.540 14 Si 0.814 3.186 15 H -0.182 1.182 16 H -0.211 1.211 17 H -0.206 1.206 18 C 0.095 3.905 19 C -0.060 4.060 20 N -0.189 5.189 21 C -0.154 4.154 22 C -0.100 4.100 23 C -0.185 4.185 24 C -0.097 4.097 25 C -0.179 4.179 26 C 0.086 3.914 27 O -0.230 6.230 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.153 0.847 38 H 0.144 0.856 39 H 0.102 0.898 40 H 0.152 0.848 41 H 0.181 0.819 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.896 10.980 -11.130 15.660 hybrid contribution 0.609 -1.184 1.554 2.046 sum -0.287 9.797 -9.576 13.703 Atomic orbital electron populations 1.22462 0.93434 1.02438 1.05001 1.22165 0.94692 0.93504 0.82260 1.21820 1.02056 0.90150 1.04868 1.22315 1.00938 0.92814 1.01062 1.20126 1.00609 0.95925 0.90801 0.88518 1.20608 0.86377 0.84983 0.82815 1.90536 1.33670 1.44410 1.80219 1.43737 1.25182 1.42756 1.05672 1.19645 0.97073 1.34244 0.94882 0.90125 1.25915 0.96419 0.96558 1.00839 1.69811 1.09021 1.47972 1.27203 0.84963 0.77527 0.78454 0.77628 1.18187 1.21090 1.20597 1.19154 0.75942 0.89893 1.05559 1.29802 0.93834 0.93010 0.89349 1.80903 1.14750 1.09767 1.13482 1.19435 1.07799 0.94369 0.93763 1.20872 0.97662 0.93895 0.97615 1.21214 1.04051 1.00870 0.92365 1.21244 0.96560 0.92775 0.99153 1.20883 1.06236 0.95254 0.95531 1.18744 0.96466 0.83042 0.93158 1.85973 1.77288 1.15981 1.43725 0.88225 0.90223 0.93982 0.91861 0.90261 0.87674 0.86521 0.91667 0.91511 0.84664 0.85578 0.89801 0.84825 0.81881 0.82885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.58 8.14 71.98 0.59 -2.99 16 2 C 0.11 2.55 1.13 -10.66 -0.01 2.54 16 3 C -0.13 -2.07 8.88 71.98 0.64 -1.43 16 4 C -0.13 -3.72 4.27 30.76 0.13 -3.58 16 5 C -0.05 -1.91 1.23 -12.24 -0.02 -1.93 16 6 H 0.10 3.32 5.00 -2.39 -0.01 3.31 16 7 C 0.46 21.33 5.81 87.66 0.51 21.83 16 8 O -0.60 -33.09 14.89 -3.08 -0.05 -33.14 16 9 N -0.45 -20.99 2.60 -645.40 -1.68 -22.67 16 10 C -0.33 -17.12 9.31 84.04 0.78 -16.34 16 11 H 0.08 4.51 7.41 -2.91 -0.02 4.48 16 12 C 0.00 0.18 5.13 84.93 0.44 0.62 16 13 N -0.90 -44.19 8.99 21.66 0.19 -43.99 16 14 Si 0.99 40.32 29.56 68.60 2.03 42.34 16 15 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 16 H -0.29 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 C 0.22 8.42 4.78 84.57 0.40 8.82 16 19 C 0.26 11.19 12.80 89.44 1.14 12.34 16 20 N -0.51 -24.03 18.54 20.01 0.37 -23.66 16 21 C -0.15 -5.70 4.54 -19.75 -0.09 -5.79 16 22 C -0.08 -3.28 8.36 22.30 0.19 -3.09 16 23 C -0.17 -5.39 10.04 22.25 0.22 -5.17 16 24 C -0.08 -2.09 10.04 22.22 0.22 -1.87 16 25 C -0.16 -4.43 9.94 22.42 0.22 -4.21 16 26 C 0.13 4.25 6.02 22.52 0.14 4.38 16 27 O -0.31 -8.98 9.67 -91.82 -0.89 -9.87 16 28 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.04 1.07 5.88 -2.39 -0.01 1.05 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.12 2.51 6.98 -2.39 -0.02 2.49 16 35 H 0.06 2.08 8.10 -2.38 -0.02 2.07 16 36 H 0.27 13.07 8.31 -92.70 -0.77 12.30 16 37 H 0.14 5.28 6.30 -2.39 -0.02 5.26 16 38 H 0.13 3.47 5.55 -2.39 -0.01 3.45 16 39 H 0.08 3.90 7.17 -2.91 -0.02 3.88 16 40 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 41 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -70.21 341.58 6.54 -63.68 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 1.05 Total: 23.16 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.51 Total: 4.14 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -1.11 Total: -90.32 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -0.93 Total: -43.00 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Total: -70.21 6.54 -63.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413298927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.199 kcal (2) G-P(sol) polarization free energy of solvation -70.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds