Wall clock time and date at job start Tue Mar 31 2020 10:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38399 * 120.01423 * 2 1 4 4 C 1.38241 * 119.76842 * 180.02562 * 3 2 1 5 5 C 1.37974 * 120.35195 * 359.82392 * 4 3 2 6 6 C 1.39239 * 120.23795 * 0.02562 * 5 4 3 7 7 C 1.37697 * 120.00962 * 180.02562 * 2 1 3 8 8 C 1.51643 * 132.18154 * 0.34328 * 7 2 1 9 9 C 1.54699 * 101.93079 * 164.59003 * 8 7 2 10 10 H 1.09001 * 110.74853 * 266.78085 * 9 8 7 11 11 C 1.50698 * 110.74943 * 143.61743 * 9 8 7 12 12 O 1.21286 * 119.99843 * 250.74748 * 11 9 8 13 13 N 1.34772 * 119.99926 * 70.74095 * 11 9 8 14 14 C 1.46499 * 120.00421 * 5.31689 * 13 11 9 15 15 C 1.50700 * 109.46935 * 269.99939 * 14 13 11 16 16 H 1.07996 * 120.00517 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99626 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00006 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46931 * 60.00332 * 19 17 15 21 21 H 1.48494 * 109.46929 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46971 * 300.00648 * 19 17 15 23 23 C 1.46504 * 119.99834 * 185.31555 * 13 11 9 24 24 C 1.53006 * 109.47152 * 84.87180 * 23 13 11 25 25 C 1.47199 * 109.47075 * 179.97438 * 24 23 13 26 26 N 9.62008 * 89.57826 * 159.33533 * 2 1 3 27 27 O 1.36389 * 129.80751 * 180.81085 * 6 5 4 28 28 H 1.08998 * 109.47297 * 269.98505 * 1 2 3 29 29 H 1.09005 * 109.47288 * 29.97770 * 1 2 3 30 30 H 1.08993 * 109.47491 * 149.97963 * 1 2 3 31 31 H 1.07999 * 120.11349 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.82120 * 179.81072 * 4 3 2 33 33 H 1.08002 * 119.88013 * 180.02562 * 5 4 3 34 34 H 1.09006 * 110.93412 * 46.42632 * 8 7 2 35 35 H 1.09002 * 110.93401 * 282.75038 * 8 7 2 36 36 H 1.09005 * 109.46489 * 29.99647 * 14 13 11 37 37 H 1.09000 * 109.47326 * 149.99637 * 14 13 11 38 38 H 0.97002 * 119.99676 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.47277 * 324.87487 * 23 13 11 40 40 H 1.09001 * 109.47400 * 204.86866 * 23 13 11 41 41 H 1.08998 * 109.46883 * 59.99461 * 24 23 13 42 42 H 1.09001 * 109.46711 * 300.00107 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1992 1.1984 0.0000 4 6 3.5816 1.1925 -0.0005 5 6 4.2737 -0.0011 0.0026 6 6 3.5848 -1.2111 0.0058 7 6 2.1956 -1.1924 -0.0005 8 6 1.7318 -2.6361 -0.0079 9 6 3.0253 -3.3855 -0.4060 10 1 3.0678 -3.5363 -1.4847 11 6 3.1240 -4.7027 0.3194 12 8 3.9505 -4.8528 1.1942 13 7 2.2936 -5.7139 -0.0039 14 6 1.3750 -5.5738 -1.1365 15 6 0.0708 -4.9912 -0.6563 16 1 -0.0609 -4.7497 0.3881 17 6 -0.9545 -4.7663 -1.5504 18 7 -0.7944 -5.0607 -2.8221 19 14 -2.5709 -4.0434 -0.9553 20 1 -2.3238 -2.7100 -0.3501 21 1 -3.5021 -3.9015 -2.1033 22 1 -3.1719 -4.9444 0.0607 23 6 2.3097 -6.9532 0.7773 24 6 1.4075 -6.7952 2.0029 25 6 1.4232 -8.0406 2.7874 26 7 1.4361 -9.0009 3.3948 27 8 4.0631 -2.4883 0.0239 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5141 31 1 1.6613 2.1349 -0.0004 32 1 4.1227 2.1271 -0.0036 33 1 5.3537 0.0031 0.0026 34 1 0.9484 -2.7898 -0.7501 35 1 1.3936 -2.9416 0.9823 36 1 1.8159 -4.9122 -1.8821 37 1 1.1940 -6.5526 -1.5807 38 1 -1.5158 -4.9028 -3.4510 39 1 3.3286 -7.1653 1.1011 40 1 1.9454 -7.7755 0.1616 41 1 0.3886 -6.5829 1.6791 42 1 1.7718 -5.9728 2.6186 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448771272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:23 Heat of formation + Delta-G solvation = -18.503321 kcal Electronic energy + Delta-G solvation = -26408.070231 eV Core-core repulsion = 22739.545193 eV Total energy + Delta-G solvation = -3668.525038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -41.08587 -39.17761 -37.32874 -36.54229 -35.35276 -33.27882 -32.85674 -31.53614 -30.70165 -29.26442 -27.46154 -26.62753 -24.72010 -23.23766 -22.89033 -21.79086 -20.56486 -18.81112 -17.69319 -17.15505 -16.66312 -16.44909 -16.35682 -15.77620 -15.30696 -14.85211 -14.65431 -14.34155 -13.96167 -13.52369 -13.50776 -13.40200 -13.08149 -12.71946 -12.68379 -12.49952 -12.40905 -12.27438 -12.12274 -12.02629 -11.75167 -11.55973 -11.37087 -11.19443 -11.16989 -10.96779 -10.75992 -10.68693 -10.52134 -10.24353 -9.91337 -9.27116 -8.73361 -8.46188 -8.08402 -7.87407 -6.37480 -4.45231 1.48693 1.55441 2.81185 3.00083 3.00627 3.09947 3.14785 3.18547 3.22066 3.80439 3.97544 4.14986 4.38647 4.73719 4.89504 4.95807 5.01511 5.13408 5.18293 5.33211 5.38013 5.39722 5.45826 5.54316 5.66847 5.73571 5.78539 5.82476 6.00895 6.03378 6.20514 6.22439 6.33237 6.45387 6.50086 6.54286 6.61442 6.75842 6.83631 6.96704 7.23256 7.43305 7.54824 7.75369 7.81101 7.97088 8.54210 8.68965 9.21584 10.68931 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010201 B = 0.005686 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.171989 B = 4923.097275 C = 6671.388306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.034 4.034 3 C -0.156 4.156 4 C -0.089 4.089 5 C -0.148 4.148 6 C 0.110 3.890 7 C -0.165 4.165 8 C -0.085 4.085 9 C 0.072 3.928 10 H 0.111 0.889 11 C 0.525 3.475 12 O -0.546 6.546 13 N -0.591 5.591 14 C 0.231 3.769 15 C -0.545 4.545 16 H 0.067 0.933 17 C 0.071 3.929 18 N -0.884 5.884 19 Si 0.887 3.113 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.133 3.867 24 C -0.048 4.048 25 C 0.222 3.778 26 N -0.455 5.455 27 O -0.284 6.284 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.089 0.911 36 H 0.039 0.961 37 H 0.044 0.956 38 H 0.268 0.732 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.125 0.875 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 9.315 1.530 9.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.035 4.035 3 C -0.174 4.174 4 C -0.107 4.107 5 C -0.167 4.167 6 C 0.064 3.936 7 C -0.166 4.166 8 C -0.122 4.122 9 C 0.013 3.987 10 H 0.129 0.871 11 C 0.311 3.689 12 O -0.425 6.425 13 N -0.322 5.322 14 C 0.112 3.888 15 C -0.583 4.583 16 H 0.085 0.915 17 C -0.134 4.134 18 N -0.521 5.521 19 Si 0.714 3.286 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.200 1.200 23 C 0.008 3.992 24 C -0.090 4.090 25 C -0.095 4.095 26 N -0.132 5.132 27 O -0.197 6.197 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.143 0.857 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.401 7.686 2.739 8.839 hybrid contribution -1.217 0.741 -0.148 1.433 sum 2.184 8.427 2.591 9.083 Atomic orbital electron populations 1.20842 0.91019 1.03278 1.02455 1.19113 0.95975 0.91099 0.97270 1.20866 0.94063 0.97037 1.05443 1.20736 0.94120 0.96749 0.99072 1.20153 0.99923 0.88958 1.07658 1.19683 0.92138 0.85792 0.95950 1.20860 0.93518 0.95843 1.06400 1.21862 0.97478 0.87715 1.05152 1.23115 0.86736 0.89095 0.99711 0.87149 1.19897 0.80885 0.84806 0.83275 1.90670 1.36601 1.82309 1.32882 1.48098 1.38344 1.13335 1.32472 1.19640 0.87540 0.98998 0.82650 1.21426 0.97850 1.43698 0.95318 0.91490 1.24899 0.98538 0.95245 0.94699 1.69890 1.33555 1.46478 1.02169 0.86721 0.83272 0.80070 0.78540 1.19553 1.21158 1.20000 1.21106 0.99496 0.87366 0.91247 1.19855 1.05271 0.88469 0.95365 1.29225 0.92440 0.94531 0.93338 1.81178 1.09675 1.11953 1.10423 1.86948 1.37321 1.12945 1.82451 0.91142 0.91677 0.90583 0.85928 0.85601 0.85821 0.85194 0.89258 0.94268 0.93832 0.92190 0.90268 0.89413 0.85707 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 9.91 36.00 0.36 -1.19 16 2 C -0.03 -0.50 5.87 -104.76 -0.61 -1.11 16 3 C -0.16 -1.95 9.73 -39.52 -0.38 -2.33 16 4 C -0.09 -1.07 10.02 -39.68 -0.40 -1.47 16 5 C -0.15 -2.10 10.06 -39.31 -0.40 -2.50 16 6 C 0.11 1.86 7.04 -38.95 -0.27 1.59 16 7 C -0.17 -2.72 6.07 -104.10 -0.63 -3.35 16 8 C -0.09 -1.46 4.58 -26.52 -0.12 -1.58 16 9 C 0.07 1.29 3.12 -26.99 -0.08 1.21 16 10 H 0.11 1.90 6.89 -51.93 -0.36 1.54 16 11 C 0.52 9.79 6.94 -10.99 -0.08 9.71 16 12 O -0.55 -11.52 16.21 -13.47 -0.22 -11.73 16 13 N -0.59 -10.19 2.47 -175.05 -0.43 -10.62 16 14 C 0.23 4.46 4.88 -5.19 -0.03 4.43 16 15 C -0.54 -11.20 6.19 -34.44 -0.21 -11.41 16 16 H 0.07 1.34 7.31 -52.49 -0.38 0.96 16 17 C 0.07 1.57 5.46 -17.82 -0.10 1.48 16 18 N -0.88 -21.24 13.29 55.43 0.74 -20.50 16 19 Si 0.89 17.70 29.54 -169.99 -5.02 12.68 16 20 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.29 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C 0.13 1.98 5.40 -4.04 -0.02 1.96 16 24 C -0.05 -0.66 5.99 -29.52 -0.18 -0.84 16 25 C 0.22 3.31 15.43 -20.75 -0.32 2.99 16 26 N -0.45 -7.74 18.54 42.17 0.78 -6.96 16 27 O -0.28 -5.33 10.41 -40.01 -0.42 -5.75 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.08 1.10 7.57 -51.93 -0.39 0.71 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.13 2.37 6.18 -51.93 -0.32 2.05 16 35 H 0.09 1.55 7.90 -51.93 -0.41 1.14 16 36 H 0.04 0.80 6.31 -51.93 -0.33 0.47 16 37 H 0.04 0.89 7.86 -51.93 -0.41 0.48 16 38 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 39 H 0.08 1.19 7.51 -51.93 -0.39 0.80 16 40 H 0.09 1.21 7.83 -51.93 -0.41 0.80 16 41 H 0.13 1.72 7.54 -51.93 -0.39 1.33 16 42 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 358.22 15.07 5.40 5.40 Total: -1.00 -26.67 358.22 -8.11 -34.77 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.46 Total: 5.13 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -3.48 Total: -2.42 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 1.09 Total: -38.08 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.64 Total: -17.48 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.02 Total: 12.68 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -26.67 -8.11 -34.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448771272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.272 kcal (2) G-P(sol) polarization free energy of solvation -26.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds