Wall clock time and date at job start Tue Mar 31 2020 10:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38399 * 120.01423 * 2 1 4 4 C 1.38241 * 119.76842 * 180.02562 * 3 2 1 5 5 C 1.37974 * 120.35195 * 359.82392 * 4 3 2 6 6 C 1.39239 * 120.23795 * 0.02562 * 5 4 3 7 7 C 1.37697 * 120.00962 * 180.02562 * 2 1 3 8 8 C 1.51643 * 132.18154 * 0.34328 * 7 2 1 9 9 C 1.54699 * 101.93079 * 164.59003 * 8 7 2 10 10 H 1.09001 * 110.74853 * 266.78085 * 9 8 7 11 11 C 1.50698 * 110.74943 * 143.61743 * 9 8 7 12 12 O 1.21286 * 119.99843 * 250.74748 * 11 9 8 13 13 N 1.34772 * 119.99926 * 70.74095 * 11 9 8 14 14 C 1.46499 * 120.00421 * 5.31689 * 13 11 9 15 15 C 1.50700 * 109.46935 * 269.99939 * 14 13 11 16 16 H 1.07996 * 120.00517 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99626 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00006 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46931 * 60.00332 * 19 17 15 21 21 H 1.48494 * 109.46929 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46971 * 300.00648 * 19 17 15 23 23 C 1.46504 * 119.99834 * 185.31555 * 13 11 9 24 24 C 1.53006 * 109.47152 * 84.87180 * 23 13 11 25 25 C 1.47199 * 109.47075 * 179.97438 * 24 23 13 26 26 N 9.62008 * 89.57826 * 159.33533 * 2 1 3 27 27 O 1.36389 * 129.80751 * 180.81085 * 6 5 4 28 28 H 1.08998 * 109.47297 * 269.98505 * 1 2 3 29 29 H 1.09005 * 109.47288 * 29.97770 * 1 2 3 30 30 H 1.08993 * 109.47491 * 149.97963 * 1 2 3 31 31 H 1.07999 * 120.11349 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.82120 * 179.81072 * 4 3 2 33 33 H 1.08002 * 119.88013 * 180.02562 * 5 4 3 34 34 H 1.09006 * 110.93412 * 46.42632 * 8 7 2 35 35 H 1.09002 * 110.93401 * 282.75038 * 8 7 2 36 36 H 1.09005 * 109.46489 * 29.99647 * 14 13 11 37 37 H 1.09000 * 109.47326 * 149.99637 * 14 13 11 38 38 H 0.97002 * 119.99676 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.47277 * 324.87487 * 23 13 11 40 40 H 1.09001 * 109.47400 * 204.86866 * 23 13 11 41 41 H 1.08998 * 109.46883 * 59.99461 * 24 23 13 42 42 H 1.09001 * 109.46711 * 300.00107 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1992 1.1984 0.0000 4 6 3.5816 1.1925 -0.0005 5 6 4.2737 -0.0011 0.0026 6 6 3.5848 -1.2111 0.0058 7 6 2.1956 -1.1924 -0.0005 8 6 1.7318 -2.6361 -0.0079 9 6 3.0253 -3.3855 -0.4060 10 1 3.0678 -3.5363 -1.4847 11 6 3.1240 -4.7027 0.3194 12 8 3.9505 -4.8528 1.1942 13 7 2.2936 -5.7139 -0.0039 14 6 1.3750 -5.5738 -1.1365 15 6 0.0708 -4.9912 -0.6563 16 1 -0.0609 -4.7497 0.3881 17 6 -0.9545 -4.7663 -1.5504 18 7 -0.7944 -5.0607 -2.8221 19 14 -2.5709 -4.0434 -0.9553 20 1 -2.3238 -2.7100 -0.3501 21 1 -3.5021 -3.9015 -2.1033 22 1 -3.1719 -4.9444 0.0607 23 6 2.3097 -6.9532 0.7773 24 6 1.4075 -6.7952 2.0029 25 6 1.4232 -8.0406 2.7874 26 7 1.4361 -9.0009 3.3948 27 8 4.0631 -2.4883 0.0239 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5141 31 1 1.6613 2.1349 -0.0004 32 1 4.1227 2.1271 -0.0036 33 1 5.3537 0.0031 0.0026 34 1 0.9484 -2.7898 -0.7501 35 1 1.3936 -2.9416 0.9823 36 1 1.8159 -4.9122 -1.8821 37 1 1.1940 -6.5526 -1.5807 38 1 -1.5158 -4.9028 -3.4510 39 1 3.3286 -7.1653 1.1011 40 1 1.9454 -7.7755 0.1616 41 1 0.3886 -6.5829 1.6791 42 1 1.7718 -5.9728 2.6186 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448771272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:21 Heat of formation + Delta-G solvation = -29.902067 kcal Electronic energy + Delta-G solvation = -26408.564518 eV Core-core repulsion = 22739.545193 eV Total energy + Delta-G solvation = -3669.019325 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.37298 -40.57665 -38.50753 -37.85734 -36.86714 -34.71316 -34.20430 -32.85729 -31.92483 -30.48513 -29.10234 -27.69438 -25.98942 -24.88141 -24.19612 -22.92597 -21.71576 -20.23855 -19.09312 -18.53623 -18.09903 -17.89482 -17.57776 -17.07760 -16.56305 -16.32746 -15.95993 -15.74741 -15.27609 -14.72519 -14.66591 -14.56100 -14.34930 -14.23186 -14.01817 -13.80936 -13.76505 -13.58186 -13.39100 -13.24999 -13.05250 -12.95569 -12.73817 -12.60488 -12.52561 -12.30740 -12.14539 -11.96020 -11.73885 -11.64147 -11.50162 -10.79889 -10.43955 -9.61047 -9.55301 -9.05261 -8.10268 -6.19950 0.40307 0.44942 1.42682 1.51520 1.56944 1.59233 1.62096 1.76948 1.85521 2.47789 2.58269 2.81358 3.12619 3.23025 3.43100 3.61841 3.80794 3.94700 4.05100 4.14208 4.15772 4.17252 4.35111 4.53595 4.54730 4.59046 4.75406 4.81246 4.82567 4.85684 4.89671 4.99815 5.05945 5.15637 5.31404 5.32910 5.45543 5.52837 5.64504 5.70066 5.78723 5.84832 6.12461 6.25744 6.43271 6.53086 6.88464 7.16194 7.49354 8.95827 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010201 B = 0.005686 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.171989 B = 4923.097275 C = 6671.388306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.046 4.046 3 C -0.148 4.148 4 C -0.079 4.079 5 C -0.154 4.154 6 C 0.075 3.925 7 C -0.187 4.187 8 C -0.073 4.073 9 C 0.072 3.928 10 H 0.109 0.891 11 C 0.526 3.474 12 O -0.572 6.572 13 N -0.584 5.584 14 C 0.242 3.758 15 C -0.529 4.529 16 H 0.074 0.926 17 C 0.033 3.967 18 N -0.918 5.918 19 Si 0.931 3.069 20 H -0.258 1.258 21 H -0.297 1.297 22 H -0.275 1.275 23 C 0.128 3.872 24 C -0.035 4.035 25 C 0.246 3.754 26 N -0.488 5.488 27 O -0.306 6.306 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.137 0.863 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.029 0.971 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.130 0.870 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.503 11.618 2.216 12.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.046 4.046 3 C -0.166 4.166 4 C -0.097 4.097 5 C -0.173 4.173 6 C 0.031 3.969 7 C -0.188 4.188 8 C -0.110 4.110 9 C 0.013 3.987 10 H 0.127 0.873 11 C 0.313 3.687 12 O -0.452 6.452 13 N -0.314 5.314 14 C 0.122 3.878 15 C -0.567 4.567 16 H 0.092 0.908 17 C -0.168 4.168 18 N -0.558 5.558 19 Si 0.758 3.242 20 H -0.182 1.182 21 H -0.223 1.223 22 H -0.200 1.200 23 C 0.003 3.997 24 C -0.076 4.076 25 C -0.071 4.071 26 N -0.166 5.166 27 O -0.220 6.220 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.175 0.825 32 H 0.184 0.816 33 H 0.155 0.845 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.148 0.852 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.071 9.989 3.443 11.003 hybrid contribution -1.056 0.116 -0.367 1.124 sum 2.015 10.105 3.076 10.753 Atomic orbital electron populations 1.20860 0.90125 1.03405 1.03060 1.19437 0.96868 0.91155 0.97143 1.21312 0.94477 0.97503 1.03317 1.21219 0.94271 0.97374 0.96787 1.20544 1.00924 0.88720 1.07063 1.20072 0.92823 0.85755 0.98295 1.20916 0.93649 0.95917 1.08282 1.21619 0.96487 0.88879 1.04004 1.23079 0.87296 0.88899 0.99457 0.87313 1.20042 0.80529 0.85190 0.82895 1.90648 1.37643 1.82806 1.34101 1.48012 1.37495 1.13863 1.32062 1.19388 0.87394 0.98087 0.82918 1.21609 0.97778 1.41982 0.95374 0.90808 1.25416 1.00844 0.95835 0.94687 1.69989 1.34126 1.48518 1.03125 0.86006 0.80461 0.80125 0.77634 1.18217 1.22338 1.20009 1.21277 1.00035 0.86637 0.91707 1.19747 1.05172 0.88006 0.94668 1.29213 0.91321 0.94055 0.92526 1.81207 1.10871 1.12972 1.11562 1.86895 1.37831 1.14116 1.83121 0.90246 0.89259 0.92728 0.82521 0.81649 0.84481 0.86713 0.90017 0.95355 0.94649 0.92684 0.90172 0.88036 0.85183 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 9.91 71.23 0.71 -2.10 16 2 C -0.05 -1.24 5.87 -19.96 -0.12 -1.36 16 3 C -0.15 -3.16 9.73 22.31 0.22 -2.94 16 4 C -0.08 -1.62 10.02 22.21 0.22 -1.40 16 5 C -0.15 -4.09 10.06 22.45 0.23 -3.87 16 6 C 0.08 2.53 7.04 22.68 0.16 2.69 16 7 C -0.19 -6.09 6.07 -19.53 -0.12 -6.21 16 8 C -0.07 -2.54 4.58 30.73 0.14 -2.40 16 9 C 0.07 2.63 3.12 30.43 0.09 2.73 16 10 H 0.11 3.93 6.89 -2.39 -0.02 3.91 16 11 C 0.53 19.89 6.94 87.66 0.61 20.50 16 12 O -0.57 -24.34 16.21 15.14 0.25 -24.09 16 13 N -0.58 -20.12 2.47 -826.13 -2.04 -22.16 16 14 C 0.24 9.41 4.88 85.63 0.42 9.82 16 15 C -0.53 -21.62 6.19 25.60 0.16 -21.46 16 16 H 0.07 2.89 7.31 -2.91 -0.02 2.87 16 17 C 0.03 1.47 5.46 84.66 0.46 1.93 16 18 N -0.92 -44.66 13.29 21.45 0.28 -44.37 16 19 Si 0.93 35.87 29.54 68.60 2.03 37.90 16 20 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 21 H -0.30 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 23 C 0.13 3.71 5.40 86.38 0.47 4.17 16 24 C -0.03 -0.92 5.99 28.79 0.17 -0.74 16 25 C 0.25 7.05 15.43 89.44 1.38 8.43 16 26 N -0.49 -16.24 18.54 20.01 0.37 -15.87 16 27 O -0.31 -11.77 10.41 -79.83 -0.83 -12.60 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 29 H 0.09 1.65 8.09 -2.38 -0.02 1.63 16 30 H 0.05 1.53 7.57 -2.39 -0.02 1.51 16 31 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 32 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 34 H 0.11 4.29 6.18 -2.38 -0.01 4.28 16 35 H 0.08 2.88 7.90 -2.39 -0.02 2.86 16 36 H 0.03 1.18 6.31 -2.38 -0.02 1.17 16 37 H 0.04 1.46 7.86 -2.39 -0.02 1.44 16 38 H 0.26 12.59 8.31 -92.71 -0.77 11.82 16 39 H 0.08 2.36 7.51 -2.39 -0.02 2.34 16 40 H 0.10 2.68 7.83 -2.39 -0.02 2.66 16 41 H 0.13 3.37 7.54 -2.39 -0.02 3.36 16 42 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -57.48 358.22 6.30 -51.18 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 1.04 Total: 22.21 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 5.20 Total: 7.80 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.38 Total: -82.40 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.59 Total: -36.70 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 2.03 Total: 37.90 kcal Total: -57.48 6.30 -51.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448771272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.277 kcal (2) G-P(sol) polarization free energy of solvation -57.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds