Wall clock time and date at job start Tue Mar 31 2020 11:40:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.30007 * 127.33865 * 2 1
4 4 O 1.20663 * 112.30689 * 179.97438 * 3 2 1
5 5 C 1.33492 * 113.15509 * 0.02562 * 4 3 2
6 6 C 1.50704 * 126.82828 * 180.02562 * 5 4 3
7 7 C 1.53004 * 109.46831 * 299.97317 * 6 5 4
8 8 C 1.52996 * 109.47396 * 59.96980 * 6 5 4
9 9 C 1.37364 * 106.34325 * 359.97438 * 5 4 3
10 10 C 1.47381 * 128.56814 * 179.97438 * 9 5 4
11 11 O 1.21615 * 119.99706 * 90.00631 * 10 9 5
12 12 N 1.34777 * 120.00010 * 270.00162 * 10 9 5
13 13 C 1.39878 * 119.99839 * 174.88803 * 12 10 9
14 14 C 1.39295 * 119.94920 * 145.62063 * 13 12 10
15 15 C 1.38486 * 120.43080 * 180.02562 * 14 13 12
16 16 C 1.37691 * 120.32063 * 359.95575 * 15 14 13
17 17 C 1.40745 * 119.88488 * 0.02562 * 16 15 14
18 18 C 1.41414 * 120.20660 * 179.97438 * 17 16 15
19 19 H 1.07994 * 120.00119 * 25.24272 * 18 17 16
20 20 C 1.39928 * 119.99742 * 205.24041 * 18 17 16
21 21 N 1.30830 * 120.00367 * 16.71252 * 20 18 17
22 22 Si 1.86805 * 119.99998 * 196.70991 * 20 18 17
23 23 H 1.48495 * 109.47066 * 89.99917 * 22 20 18
24 24 H 1.48497 * 109.47174 * 210.00614 * 22 20 18
25 25 H 1.48503 * 109.46753 * 329.99953 * 22 20 18
26 26 C 1.38258 * 119.94557 * 325.34407 * 13 12 10
27 27 H 1.09005 * 109.47370 * 90.02261 * 1 2 3
28 28 H 1.08998 * 109.47712 * 210.02292 * 1 2 3
29 29 H 1.08996 * 109.47267 * 330.02498 * 1 2 3
30 30 H 1.09001 * 109.47098 * 179.97438 * 6 5 4
31 31 H 1.09001 * 109.47413 * 60.00029 * 7 6 5
32 32 H 1.08992 * 109.47174 * 180.02562 * 7 6 5
33 33 H 1.09007 * 109.46859 * 299.99820 * 7 6 5
34 34 H 1.09004 * 109.47000 * 60.00020 * 8 6 5
35 35 H 1.08996 * 109.47508 * 180.02562 * 8 6 5
36 36 H 1.09001 * 109.47139 * 300.00149 * 8 6 5
37 37 H 0.96996 * 119.99843 * 354.89047 * 12 10 9
38 38 H 1.08005 * 119.78867 * 0.02562 * 14 13 12
39 39 H 1.07994 * 119.84567 * 179.97438 * 15 14 13
40 40 H 1.08001 * 120.05975 * 180.02562 * 16 15 14
41 41 H 0.96996 * 120.00044 * 179.97438 * 21 20 18
42 42 H 1.08002 * 120.16411 * 0.02562 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2955 1.0336 0.0000
4 8 3.4608 0.7207 0.0005
5 6 3.6495 -0.6008 0.0004
6 6 4.9713 -1.3247 0.0014
7 6 5.7659 -0.9372 -1.2474
8 6 5.7642 -0.9368 1.2510
9 6 2.3992 -1.1697 0.0003
10 6 2.0401 -2.5991 -0.0004
11 8 1.8920 -3.1893 1.0526
12 7 1.8758 -3.2521 -1.1679
13 6 1.6407 -4.6310 -1.1709
14 6 0.8090 -5.1925 -2.1370
15 6 0.5689 -6.5564 -2.1490
16 6 1.1511 -7.3730 -1.2055
17 6 1.9940 -6.8198 -0.2235
18 6 2.5951 -7.6521 0.7491
19 1 2.7619 -8.6977 0.5364
20 6 2.9736 -7.1209 1.9870
21 7 2.4934 -5.9687 2.3789
22 14 4.1646 -8.0568 3.0802
23 1 5.5560 -7.6489 2.7595
24 1 3.8747 -7.7506 4.5041
25 1 4.0098 -9.5151 2.8461
26 6 2.2387 -5.4352 -0.2184
27 1 -0.3634 -0.0004 -1.0277
28 1 -0.3634 -0.8897 0.5142
29 1 -0.3633 0.8902 0.5134
30 1 4.7964 -2.4005 0.0015
31 1 5.9408 0.1387 -1.2475
32 1 6.7217 -1.4610 -1.2469
33 1 5.2009 -1.2136 -2.1377
34 1 5.1982 -1.2127 2.1407
35 1 6.7204 -1.4599 1.2516
36 1 5.9391 0.1391 1.2509
37 1 1.9206 -2.7659 -2.0060
38 1 0.3484 -4.5602 -2.8817
39 1 -0.0778 -6.9817 -2.9021
40 1 0.9613 -8.4361 -1.2191
41 1 2.7556 -5.6007 3.2372
42 1 2.8869 -5.0013 0.5286
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000456722371.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:40:33
Heat of formation + Delta-G solvation = 33.533502 kcal
Electronic energy + Delta-G solvation = -26244.367091 eV
Core-core repulsion = 22578.098538 eV
Total energy + Delta-G solvation = -3666.268552 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 1.97 seconds
Orbital eigenvalues (eV)
-44.80994 -39.47343 -37.12973 -36.07725 -34.46318 -34.27414 -33.14417 -30.96117
-29.55660 -28.83051 -28.25735 -27.32590 -25.28709 -24.49729 -22.93696 -21.60187
-20.80080 -19.78669 -19.17196 -17.93721 -17.66144 -17.17502 -16.08812 -15.76964
-15.50448 -14.86224 -14.68317 -14.29847 -14.05568 -13.60913 -13.50596 -13.27967
-13.22699 -12.97692 -12.83076 -12.74478 -12.35300 -12.26248 -11.63459 -11.57619
-11.42334 -11.41367 -11.21184 -11.10151 -10.86783 -10.76981 -10.54204 -10.20362
-9.84510 -9.74573 -9.44915 -9.27707 -9.02054 -8.99127 -7.38300 -6.97538
-6.57794 -4.30494 1.38065 1.96979 2.54145 2.85161 2.89033 3.11517
3.14478 3.19857 3.31677 3.70986 3.98763 4.16506 4.25351 4.67418
4.75425 4.84589 4.89434 5.15761 5.25237 5.38338 5.44047 5.47796
5.59919 5.64349 5.67234 5.72233 5.73377 5.88741 6.04752 6.07028
6.10436 6.19390 6.42951 6.70011 6.95464 7.03484 7.12667 7.31740
7.58946 7.75340 7.87442 8.07383 8.23561 8.25957 8.35794 8.56035
8.84349 8.95250 8.99067 10.28044
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.012164 B = 0.004873 C = 0.004067
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2301.377884 B = 5744.662008 C = 6882.806275
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.052 3.948
3 N -0.362 5.362
4 O 0.095 5.905
5 C 0.022 3.978
6 C -0.018 4.018
7 C -0.147 4.147
8 C -0.148 4.148
9 C -0.237 4.237
10 C 0.575 3.425
11 O -0.466 6.466
12 N -0.660 5.660
13 C 0.142 3.858
14 C -0.266 4.266
15 C -0.079 4.079
16 C -0.237 4.237
17 C 0.120 3.880
18 C -0.464 4.464
19 H 0.077 0.923
20 C 0.072 3.928
21 N -0.760 5.760
22 Si 0.901 3.099
23 H -0.269 1.269
24 H -0.278 1.278
25 H -0.263 1.263
26 C -0.158 4.158
27 H 0.084 0.916
28 H 0.087 0.913
29 H 0.080 0.920
30 H 0.107 0.893
31 H 0.063 0.937
32 H 0.071 0.929
33 H 0.061 0.939
34 H 0.064 0.936
35 H 0.071 0.929
36 H 0.062 0.938
37 H 0.396 0.604
38 H 0.088 0.912
39 H 0.090 0.910
40 H 0.092 0.908
41 H 0.281 0.719
42 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.231 11.256 -4.790 12.944
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.110 4.110
3 N -0.069 5.069
4 O 0.034 5.966
5 C -0.041 4.041
6 C -0.037 4.037
7 C -0.204 4.204
8 C -0.205 4.205
9 C -0.245 4.245
10 C 0.358 3.642
11 O -0.336 6.336
12 N -0.304 5.304
13 C 0.051 3.949
14 C -0.288 4.288
15 C -0.098 4.098
16 C -0.257 4.257
17 C 0.117 3.883
18 C -0.493 4.493
19 H 0.096 0.904
20 C -0.148 4.148
21 N -0.383 5.383
22 Si 0.726 3.274
23 H -0.194 1.194
24 H -0.204 1.204
25 H -0.187 1.187
26 C -0.179 4.179
27 H 0.102 0.898
28 H 0.105 0.895
29 H 0.099 0.901
30 H 0.125 0.875
31 H 0.082 0.918
32 H 0.090 0.910
33 H 0.080 0.920
34 H 0.083 0.917
35 H 0.090 0.910
36 H 0.082 0.918
37 H 0.230 0.770
38 H 0.106 0.894
39 H 0.109 0.891
40 H 0.110 0.890
41 H 0.092 0.908
42 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 3.946 12.346 -3.761 13.496
hybrid contribution 0.247 -0.849 0.153 0.897
sum 4.193 11.498 -3.608 12.759
Atomic orbital electron populations
1.20222 0.85263 1.04350 1.03675 1.24744 0.98530 0.86712 1.01025
1.73578 0.89234 1.23459 1.20593 1.84469 1.21355 1.22689 1.68126
1.24615 0.96966 0.83458 0.99077 1.19930 0.86922 0.99142 0.97718
1.21875 1.00197 1.02255 0.96122 1.21864 1.00175 1.02099 0.96411
1.22174 0.92518 0.95782 1.14008 1.16956 0.78866 0.83537 0.84865
1.91065 1.45873 1.66387 1.30294 1.43330 1.71174 1.08089 1.07825
1.17569 0.98504 0.80113 0.98747 1.19999 1.09072 0.95166 1.04534
1.20288 0.98807 0.92994 0.97668 1.20987 1.05141 0.98025 1.01576
1.17476 0.88499 0.91696 0.90631 1.19535 1.35218 0.96926 0.97612
0.90437 1.25958 0.95224 0.95011 0.98626 1.69903 1.32922 1.15947
1.19500 0.86424 0.81129 0.80891 0.78955 1.19414 1.20371 1.18695
1.21342 1.03145 0.93432 0.99987 0.89757 0.89467 0.90130 0.87511
0.91783 0.90980 0.91990 0.91734 0.91006 0.91848 0.77020 0.89393
0.89147 0.88991 0.90767 0.84783
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.94 10.49 36.00 0.38 -0.57 16
2 C 0.05 0.78 7.59 -79.77 -0.61 0.17 16
3 N -0.36 -5.46 12.01 34.78 0.42 -5.04 16
4 O 0.09 1.35 11.06 18.65 0.21 1.56 16
5 C 0.02 0.32 6.06 -34.62 -0.21 0.11 16
6 C -0.02 -0.22 3.33 -91.77 -0.31 -0.52 16
7 C -0.15 -1.40 9.18 37.16 0.34 -1.06 16
8 C -0.15 -1.60 9.18 37.16 0.34 -1.26 16
9 C -0.24 -3.88 6.25 -102.89 -0.64 -4.52 16
10 C 0.58 11.28 7.02 -12.54 -0.09 11.20 16
11 O -0.47 -11.35 14.87 5.26 0.08 -11.27 16
12 N -0.66 -12.36 5.33 -10.89 -0.06 -12.42 16
13 C 0.14 3.24 6.25 -83.79 -0.52 2.72 16
14 C -0.27 -5.75 9.97 -39.10 -0.39 -6.14 16
15 C -0.08 -1.74 10.02 -39.69 -0.40 -2.14 16
16 C -0.24 -5.80 9.79 -38.83 -0.38 -6.18 16
17 C 0.12 3.22 5.57 -106.85 -0.59 2.62 16
18 C -0.46 -12.36 9.05 -37.74 -0.34 -12.70 16
19 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16
20 C 0.07 1.84 5.16 -17.35 -0.09 1.75 16
21 N -0.76 -20.33 10.96 55.55 0.61 -19.72 16
22 Si 0.90 18.90 29.59 -169.99 -5.03 13.87 16
23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16
24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16
25 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16
26 C -0.16 -4.11 7.28 -38.68 -0.28 -4.39 16
27 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16
28 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16
29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
30 H 0.11 1.51 7.70 -51.93 -0.40 1.11 16
31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
37 H 0.40 6.00 8.80 -40.82 -0.36 5.64 16
38 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16
39 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16
40 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16
41 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16
42 H 0.13 3.70 4.63 -52.49 -0.24 3.46 16
LS Contribution 362.08 15.07 5.46 5.46
Total: -1.00 -30.72 362.08 -7.74 -38.45
By element:
Atomic # 1 Polarization: 15.65 SS G_CDS: -5.62 Total: 10.02 kcal
Atomic # 6 Polarization: -17.12 SS G_CDS: -3.79 Total: -20.91 kcal
Atomic # 7 Polarization: -38.15 SS G_CDS: 0.97 Total: -37.18 kcal
Atomic # 8 Polarization: -9.99 SS G_CDS: 0.28 Total: -9.71 kcal
Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -30.72 -7.74 -38.45 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000456722371.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.985 kcal
(2) G-P(sol) polarization free energy of solvation -30.716 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.269 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.534 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.97 seconds