Wall clock time and date at job start Tue Mar 31 2020 11:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30007 * 127.33865 * 2 1 4 4 O 1.20663 * 112.30689 * 179.97438 * 3 2 1 5 5 C 1.33492 * 113.15509 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.82828 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46831 * 299.97317 * 6 5 4 8 8 C 1.52996 * 109.47396 * 59.96980 * 6 5 4 9 9 C 1.37364 * 106.34325 * 359.97438 * 5 4 3 10 10 C 1.47381 * 128.56814 * 179.97438 * 9 5 4 11 11 O 1.21615 * 119.99706 * 90.00631 * 10 9 5 12 12 N 1.34777 * 120.00010 * 270.00162 * 10 9 5 13 13 C 1.39878 * 119.99839 * 174.88803 * 12 10 9 14 14 C 1.39295 * 119.94920 * 145.62063 * 13 12 10 15 15 C 1.38486 * 120.43080 * 180.02562 * 14 13 12 16 16 C 1.37691 * 120.32063 * 359.95575 * 15 14 13 17 17 C 1.40745 * 119.88488 * 0.02562 * 16 15 14 18 18 C 1.41414 * 120.20660 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00119 * 25.24272 * 18 17 16 20 20 C 1.39928 * 119.99742 * 205.24041 * 18 17 16 21 21 N 1.30830 * 120.00367 * 16.71252 * 20 18 17 22 22 Si 1.86805 * 119.99998 * 196.70991 * 20 18 17 23 23 H 1.48495 * 109.47066 * 89.99917 * 22 20 18 24 24 H 1.48497 * 109.47174 * 210.00614 * 22 20 18 25 25 H 1.48503 * 109.46753 * 329.99953 * 22 20 18 26 26 C 1.38258 * 119.94557 * 325.34407 * 13 12 10 27 27 H 1.09005 * 109.47370 * 90.02261 * 1 2 3 28 28 H 1.08998 * 109.47712 * 210.02292 * 1 2 3 29 29 H 1.08996 * 109.47267 * 330.02498 * 1 2 3 30 30 H 1.09001 * 109.47098 * 179.97438 * 6 5 4 31 31 H 1.09001 * 109.47413 * 60.00029 * 7 6 5 32 32 H 1.08992 * 109.47174 * 180.02562 * 7 6 5 33 33 H 1.09007 * 109.46859 * 299.99820 * 7 6 5 34 34 H 1.09004 * 109.47000 * 60.00020 * 8 6 5 35 35 H 1.08996 * 109.47508 * 180.02562 * 8 6 5 36 36 H 1.09001 * 109.47139 * 300.00149 * 8 6 5 37 37 H 0.96996 * 119.99843 * 354.89047 * 12 10 9 38 38 H 1.08005 * 119.78867 * 0.02562 * 14 13 12 39 39 H 1.07994 * 119.84567 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.05975 * 180.02562 * 16 15 14 41 41 H 0.96996 * 120.00044 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.16411 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6495 -0.6008 0.0004 6 6 4.9713 -1.3247 0.0014 7 6 5.7659 -0.9372 -1.2474 8 6 5.7642 -0.9368 1.2510 9 6 2.3992 -1.1697 0.0003 10 6 2.0401 -2.5991 -0.0004 11 8 1.8920 -3.1893 1.0526 12 7 1.8758 -3.2521 -1.1679 13 6 1.6407 -4.6310 -1.1709 14 6 0.8090 -5.1925 -2.1370 15 6 0.5689 -6.5564 -2.1490 16 6 1.1511 -7.3730 -1.2055 17 6 1.9940 -6.8198 -0.2235 18 6 2.5951 -7.6521 0.7491 19 1 2.7619 -8.6977 0.5364 20 6 2.9736 -7.1209 1.9870 21 7 2.4934 -5.9687 2.3789 22 14 4.1646 -8.0568 3.0802 23 1 5.5560 -7.6489 2.7595 24 1 3.8747 -7.7506 4.5041 25 1 4.0098 -9.5151 2.8461 26 6 2.2387 -5.4352 -0.2184 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5134 30 1 4.7964 -2.4005 0.0015 31 1 5.9408 0.1387 -1.2475 32 1 6.7217 -1.4610 -1.2469 33 1 5.2009 -1.2136 -2.1377 34 1 5.1982 -1.2127 2.1407 35 1 6.7204 -1.4599 1.2516 36 1 5.9391 0.1391 1.2509 37 1 1.9206 -2.7659 -2.0060 38 1 0.3484 -4.5602 -2.8817 39 1 -0.0778 -6.9817 -2.9021 40 1 0.9613 -8.4361 -1.2191 41 1 2.7556 -5.6007 3.2372 42 1 2.8869 -5.0013 0.5286 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456722371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:33 Heat of formation + Delta-G solvation = 33.533502 kcal Electronic energy + Delta-G solvation = -26244.367091 eV Core-core repulsion = 22578.098538 eV Total energy + Delta-G solvation = -3666.268552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -44.80994 -39.47343 -37.12973 -36.07725 -34.46318 -34.27414 -33.14417 -30.96117 -29.55660 -28.83051 -28.25735 -27.32590 -25.28709 -24.49729 -22.93696 -21.60187 -20.80080 -19.78669 -19.17196 -17.93721 -17.66144 -17.17502 -16.08812 -15.76964 -15.50448 -14.86224 -14.68317 -14.29847 -14.05568 -13.60913 -13.50596 -13.27967 -13.22699 -12.97692 -12.83076 -12.74478 -12.35300 -12.26248 -11.63459 -11.57619 -11.42334 -11.41367 -11.21184 -11.10151 -10.86783 -10.76981 -10.54204 -10.20362 -9.84510 -9.74573 -9.44915 -9.27707 -9.02054 -8.99127 -7.38300 -6.97538 -6.57794 -4.30494 1.38065 1.96979 2.54145 2.85161 2.89033 3.11517 3.14478 3.19857 3.31677 3.70986 3.98763 4.16506 4.25351 4.67418 4.75425 4.84589 4.89434 5.15761 5.25237 5.38338 5.44047 5.47796 5.59919 5.64349 5.67234 5.72233 5.73377 5.88741 6.04752 6.07028 6.10436 6.19390 6.42951 6.70011 6.95464 7.03484 7.12667 7.31740 7.58946 7.75340 7.87442 8.07383 8.23561 8.25957 8.35794 8.56035 8.84349 8.95250 8.99067 10.28044 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.004873 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.377884 B = 5744.662008 C = 6882.806275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.052 3.948 3 N -0.362 5.362 4 O 0.095 5.905 5 C 0.022 3.978 6 C -0.018 4.018 7 C -0.147 4.147 8 C -0.148 4.148 9 C -0.237 4.237 10 C 0.575 3.425 11 O -0.466 6.466 12 N -0.660 5.660 13 C 0.142 3.858 14 C -0.266 4.266 15 C -0.079 4.079 16 C -0.237 4.237 17 C 0.120 3.880 18 C -0.464 4.464 19 H 0.077 0.923 20 C 0.072 3.928 21 N -0.760 5.760 22 Si 0.901 3.099 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.158 4.158 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.396 0.604 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.281 0.719 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 11.256 -4.790 12.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 N -0.069 5.069 4 O 0.034 5.966 5 C -0.041 4.041 6 C -0.037 4.037 7 C -0.204 4.204 8 C -0.205 4.205 9 C -0.245 4.245 10 C 0.358 3.642 11 O -0.336 6.336 12 N -0.304 5.304 13 C 0.051 3.949 14 C -0.288 4.288 15 C -0.098 4.098 16 C -0.257 4.257 17 C 0.117 3.883 18 C -0.493 4.493 19 H 0.096 0.904 20 C -0.148 4.148 21 N -0.383 5.383 22 Si 0.726 3.274 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.179 4.179 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.230 0.770 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.946 12.346 -3.761 13.496 hybrid contribution 0.247 -0.849 0.153 0.897 sum 4.193 11.498 -3.608 12.759 Atomic orbital electron populations 1.20222 0.85263 1.04350 1.03675 1.24744 0.98530 0.86712 1.01025 1.73578 0.89234 1.23459 1.20593 1.84469 1.21355 1.22689 1.68126 1.24615 0.96966 0.83458 0.99077 1.19930 0.86922 0.99142 0.97718 1.21875 1.00197 1.02255 0.96122 1.21864 1.00175 1.02099 0.96411 1.22174 0.92518 0.95782 1.14008 1.16956 0.78866 0.83537 0.84865 1.91065 1.45873 1.66387 1.30294 1.43330 1.71174 1.08089 1.07825 1.17569 0.98504 0.80113 0.98747 1.19999 1.09072 0.95166 1.04534 1.20288 0.98807 0.92994 0.97668 1.20987 1.05141 0.98025 1.01576 1.17476 0.88499 0.91696 0.90631 1.19535 1.35218 0.96926 0.97612 0.90437 1.25958 0.95224 0.95011 0.98626 1.69903 1.32922 1.15947 1.19500 0.86424 0.81129 0.80891 0.78955 1.19414 1.20371 1.18695 1.21342 1.03145 0.93432 0.99987 0.89757 0.89467 0.90130 0.87511 0.91783 0.90980 0.91990 0.91734 0.91006 0.91848 0.77020 0.89393 0.89147 0.88991 0.90767 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.49 36.00 0.38 -0.57 16 2 C 0.05 0.78 7.59 -79.77 -0.61 0.17 16 3 N -0.36 -5.46 12.01 34.78 0.42 -5.04 16 4 O 0.09 1.35 11.06 18.65 0.21 1.56 16 5 C 0.02 0.32 6.06 -34.62 -0.21 0.11 16 6 C -0.02 -0.22 3.33 -91.77 -0.31 -0.52 16 7 C -0.15 -1.40 9.18 37.16 0.34 -1.06 16 8 C -0.15 -1.60 9.18 37.16 0.34 -1.26 16 9 C -0.24 -3.88 6.25 -102.89 -0.64 -4.52 16 10 C 0.58 11.28 7.02 -12.54 -0.09 11.20 16 11 O -0.47 -11.35 14.87 5.26 0.08 -11.27 16 12 N -0.66 -12.36 5.33 -10.89 -0.06 -12.42 16 13 C 0.14 3.24 6.25 -83.79 -0.52 2.72 16 14 C -0.27 -5.75 9.97 -39.10 -0.39 -6.14 16 15 C -0.08 -1.74 10.02 -39.69 -0.40 -2.14 16 16 C -0.24 -5.80 9.79 -38.83 -0.38 -6.18 16 17 C 0.12 3.22 5.57 -106.85 -0.59 2.62 16 18 C -0.46 -12.36 9.05 -37.74 -0.34 -12.70 16 19 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 20 C 0.07 1.84 5.16 -17.35 -0.09 1.75 16 21 N -0.76 -20.33 10.96 55.55 0.61 -19.72 16 22 Si 0.90 18.90 29.59 -169.99 -5.03 13.87 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 26 C -0.16 -4.11 7.28 -38.68 -0.28 -4.39 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.11 1.51 7.70 -51.93 -0.40 1.11 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.40 6.00 8.80 -40.82 -0.36 5.64 16 38 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 41 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 42 H 0.13 3.70 4.63 -52.49 -0.24 3.46 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -30.72 362.08 -7.74 -38.45 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.62 Total: 10.02 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -3.79 Total: -20.91 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.97 Total: -37.18 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.28 Total: -9.71 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.72 -7.74 -38.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456722371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.985 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds