Wall clock time and date at job start Tue Mar 31 2020 11:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30007 * 127.33865 * 2 1 4 4 O 1.20663 * 112.30689 * 179.97438 * 3 2 1 5 5 C 1.33492 * 113.15509 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.82828 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46831 * 299.97317 * 6 5 4 8 8 C 1.52996 * 109.47396 * 59.96980 * 6 5 4 9 9 C 1.37364 * 106.34325 * 359.97438 * 5 4 3 10 10 C 1.47381 * 128.56814 * 179.97438 * 9 5 4 11 11 O 1.21615 * 119.99706 * 90.00631 * 10 9 5 12 12 N 1.34777 * 120.00010 * 270.00162 * 10 9 5 13 13 C 1.39878 * 119.99839 * 174.88803 * 12 10 9 14 14 C 1.39295 * 119.94920 * 145.62063 * 13 12 10 15 15 C 1.38486 * 120.43080 * 180.02562 * 14 13 12 16 16 C 1.37691 * 120.32063 * 359.95575 * 15 14 13 17 17 C 1.40745 * 119.88488 * 0.02562 * 16 15 14 18 18 C 1.41414 * 120.20660 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00119 * 25.24272 * 18 17 16 20 20 C 1.39928 * 119.99742 * 205.24041 * 18 17 16 21 21 N 1.30830 * 120.00367 * 16.71252 * 20 18 17 22 22 Si 1.86805 * 119.99998 * 196.70991 * 20 18 17 23 23 H 1.48495 * 109.47066 * 89.99917 * 22 20 18 24 24 H 1.48497 * 109.47174 * 210.00614 * 22 20 18 25 25 H 1.48503 * 109.46753 * 329.99953 * 22 20 18 26 26 C 1.38258 * 119.94557 * 325.34407 * 13 12 10 27 27 H 1.09005 * 109.47370 * 90.02261 * 1 2 3 28 28 H 1.08998 * 109.47712 * 210.02292 * 1 2 3 29 29 H 1.08996 * 109.47267 * 330.02498 * 1 2 3 30 30 H 1.09001 * 109.47098 * 179.97438 * 6 5 4 31 31 H 1.09001 * 109.47413 * 60.00029 * 7 6 5 32 32 H 1.08992 * 109.47174 * 180.02562 * 7 6 5 33 33 H 1.09007 * 109.46859 * 299.99820 * 7 6 5 34 34 H 1.09004 * 109.47000 * 60.00020 * 8 6 5 35 35 H 1.08996 * 109.47508 * 180.02562 * 8 6 5 36 36 H 1.09001 * 109.47139 * 300.00149 * 8 6 5 37 37 H 0.96996 * 119.99843 * 354.89047 * 12 10 9 38 38 H 1.08005 * 119.78867 * 0.02562 * 14 13 12 39 39 H 1.07994 * 119.84567 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.05975 * 180.02562 * 16 15 14 41 41 H 0.96996 * 120.00044 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.16411 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6495 -0.6008 0.0004 6 6 4.9713 -1.3247 0.0014 7 6 5.7659 -0.9372 -1.2474 8 6 5.7642 -0.9368 1.2510 9 6 2.3992 -1.1697 0.0003 10 6 2.0401 -2.5991 -0.0004 11 8 1.8920 -3.1893 1.0526 12 7 1.8758 -3.2521 -1.1679 13 6 1.6407 -4.6310 -1.1709 14 6 0.8090 -5.1925 -2.1370 15 6 0.5689 -6.5564 -2.1490 16 6 1.1511 -7.3730 -1.2055 17 6 1.9940 -6.8198 -0.2235 18 6 2.5951 -7.6521 0.7491 19 1 2.7619 -8.6977 0.5364 20 6 2.9736 -7.1209 1.9870 21 7 2.4934 -5.9687 2.3789 22 14 4.1646 -8.0568 3.0802 23 1 5.5560 -7.6489 2.7595 24 1 3.8747 -7.7506 4.5041 25 1 4.0098 -9.5151 2.8461 26 6 2.2387 -5.4352 -0.2184 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5134 30 1 4.7964 -2.4005 0.0015 31 1 5.9408 0.1387 -1.2475 32 1 6.7217 -1.4610 -1.2469 33 1 5.2009 -1.2136 -2.1377 34 1 5.1982 -1.2127 2.1407 35 1 6.7204 -1.4599 1.2516 36 1 5.9391 0.1391 1.2509 37 1 1.9206 -2.7659 -2.0060 38 1 0.3484 -4.5602 -2.8817 39 1 -0.0778 -6.9817 -2.9021 40 1 0.9613 -8.4361 -1.2191 41 1 2.7556 -5.6007 3.2372 42 1 2.8869 -5.0013 0.5286 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456722371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:31 Heat of formation + Delta-G solvation = 16.523805 kcal Electronic energy + Delta-G solvation = -26245.104686 eV Core-core repulsion = 22578.098538 eV Total energy + Delta-G solvation = -3667.006148 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -45.99601 -41.13426 -38.91167 -37.09183 -36.06926 -35.65711 -34.95124 -32.16324 -31.43163 -30.15801 -29.71990 -28.14834 -27.19904 -25.90913 -23.95287 -23.29834 -22.53202 -21.33075 -20.42570 -19.59377 -18.88247 -18.67543 -17.59657 -17.33065 -16.77357 -16.61250 -16.38980 -15.61919 -15.56108 -14.99752 -14.76273 -14.51270 -14.41887 -14.32600 -14.17195 -14.00292 -13.83377 -13.45088 -13.10695 -13.02501 -12.84892 -12.63112 -12.61107 -12.38749 -12.31298 -12.22282 -12.01144 -11.86165 -11.54957 -11.21793 -11.01919 -10.86811 -10.77799 -10.50574 -9.28473 -8.80117 -8.44812 -6.29567 0.19291 0.75837 0.81205 1.09937 1.37220 1.46664 1.50638 1.57347 1.72327 2.22497 2.27274 2.79981 3.03651 3.09977 3.64108 3.73556 3.79877 3.97101 3.99448 4.12653 4.36876 4.50490 4.53297 4.53480 4.65412 4.71694 4.72298 4.81870 4.85913 4.90006 5.02379 5.03603 5.14456 5.20568 5.22214 5.27185 5.28136 5.42011 5.82289 5.89376 6.03263 6.17723 6.43580 6.60513 6.68565 6.99891 7.07180 7.08407 7.26363 8.39413 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.004873 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.377884 B = 5744.662008 C = 6882.806275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.055 3.945 3 N -0.369 5.369 4 O 0.101 5.899 5 C 0.043 3.957 6 C -0.021 4.021 7 C -0.141 4.141 8 C -0.146 4.146 9 C -0.268 4.268 10 C 0.584 3.416 11 O -0.519 6.519 12 N -0.646 5.646 13 C 0.142 3.858 14 C -0.256 4.256 15 C -0.077 4.077 16 C -0.255 4.255 17 C 0.087 3.913 18 C -0.501 4.501 19 H 0.076 0.924 20 C 0.031 3.969 21 N -0.796 5.796 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.256 1.256 26 C -0.184 4.184 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.416 0.584 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.281 0.719 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.614 12.528 -6.363 14.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 N -0.077 5.077 4 O 0.041 5.959 5 C -0.021 4.021 6 C -0.041 4.041 7 C -0.199 4.199 8 C -0.203 4.203 9 C -0.275 4.275 10 C 0.369 3.631 11 O -0.393 6.393 12 N -0.292 5.292 13 C 0.049 3.951 14 C -0.277 4.277 15 C -0.096 4.096 16 C -0.275 4.275 17 C 0.084 3.916 18 C -0.530 4.530 19 H 0.094 0.906 20 C -0.186 4.186 21 N -0.420 5.420 22 Si 0.795 3.205 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.179 1.179 26 C -0.206 4.206 27 H 0.126 0.874 28 H 0.091 0.909 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.253 0.747 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.333 13.645 -5.389 15.298 hybrid contribution 0.055 -1.167 0.503 1.272 sum 4.388 12.478 -4.886 14.101 Atomic orbital electron populations 1.20351 0.83476 1.04488 1.05224 1.25111 0.99670 0.85859 1.00063 1.73567 0.89385 1.23382 1.21337 1.84469 1.21214 1.22259 1.67933 1.24950 0.97143 0.83430 0.96588 1.20055 0.86597 0.97392 1.00010 1.21875 1.00331 1.03417 0.94234 1.21874 1.00366 1.03470 0.94578 1.21874 0.94060 0.94314 1.17277 1.17261 0.77256 0.84533 0.84063 1.91049 1.48104 1.67964 1.32144 1.43189 1.70467 1.06764 1.08765 1.17703 0.97780 0.81583 0.98008 1.20459 1.07399 0.95627 1.04196 1.20717 0.98275 0.93078 0.97504 1.21210 1.05401 0.98850 1.01993 1.17868 0.89597 0.92427 0.91745 1.19772 1.37382 0.97115 0.98763 0.90596 1.26773 0.96379 0.95786 0.99662 1.70026 1.34406 1.17690 1.19900 0.85332 0.78701 0.79593 0.76879 1.18656 1.19838 1.17933 1.21243 1.04517 0.93823 1.00999 0.87425 0.90895 0.88355 0.90117 0.90279 0.89337 0.92127 0.93948 0.89158 0.90076 0.74672 0.85513 0.85282 0.88433 0.90902 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 10.49 71.23 0.75 -1.03 16 2 C 0.06 1.59 7.59 45.16 0.34 1.94 16 3 N -0.37 -10.55 12.01 -44.77 -0.54 -11.09 16 4 O 0.10 2.72 11.06 76.99 0.85 3.57 16 5 C 0.04 1.19 6.06 25.48 0.15 1.35 16 6 C -0.02 -0.50 3.33 -11.54 -0.04 -0.54 16 7 C -0.14 -2.40 9.18 71.98 0.66 -1.74 16 8 C -0.15 -3.02 9.18 71.98 0.66 -2.36 16 9 C -0.27 -8.72 6.25 -18.75 -0.12 -8.84 16 10 C 0.58 23.42 7.02 86.65 0.61 24.03 16 11 O -0.52 -26.55 14.87 -4.08 -0.06 -26.61 16 12 N -0.65 -24.01 5.33 -306.63 -1.63 -25.64 16 13 C 0.14 6.45 6.25 38.12 0.24 6.69 16 14 C -0.26 -10.47 9.97 22.58 0.23 -10.24 16 15 C -0.08 -3.25 10.02 22.20 0.22 -3.03 16 16 C -0.25 -12.52 9.79 22.75 0.22 -12.30 16 17 C 0.09 4.80 5.57 -21.31 -0.12 4.68 16 18 C -0.50 -27.89 9.05 23.46 0.21 -27.68 16 19 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 20 C 0.03 1.63 5.16 85.25 0.44 2.07 16 21 N -0.80 -44.90 10.96 21.82 0.24 -44.66 16 22 Si 0.97 40.06 29.59 68.60 2.03 42.09 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 26 C -0.18 -9.96 7.28 22.85 0.17 -9.80 16 27 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 2.37 7.70 -2.39 -0.02 2.35 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.42 11.93 8.80 -92.71 -0.82 11.12 16 38 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 39 H 0.13 4.41 8.06 -2.91 -0.02 4.38 16 40 H 0.10 4.54 8.06 -2.91 -0.02 4.51 16 41 H 0.28 14.87 8.30 -92.71 -0.77 14.10 16 42 H 0.11 6.49 4.63 -2.91 -0.01 6.48 16 Total: -1.00 -70.03 362.08 5.75 -64.28 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.24 Total: 34.85 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 4.63 Total: -36.80 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -1.93 Total: -81.39 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: 0.79 Total: -23.04 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -70.03 5.75 -64.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456722371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.802 kcal (2) G-P(sol) polarization free energy of solvation -70.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds