Wall clock time and date at job start Tue Mar 31 2020 11:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00313 * 2 1 4 4 C 1.52998 * 109.47017 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47142 * 64.99687 * 4 3 2 6 6 C 1.36855 * 120.00446 * 264.56208 * 5 4 3 7 7 H 1.07998 * 119.99458 * 136.94592 * 6 5 4 8 8 C 1.39058 * 120.00036 * 316.95803 * 6 5 4 9 9 N 1.31355 * 119.99937 * 343.79433 * 8 6 5 10 10 Si 1.86795 * 120.00169 * 163.80281 * 8 6 5 11 11 H 1.48500 * 109.47255 * 89.99367 * 10 8 6 12 12 H 1.48491 * 109.47310 * 209.99820 * 10 8 6 13 13 H 1.48509 * 109.46980 * 329.99524 * 10 8 6 14 14 C 1.34781 * 119.99757 * 84.57146 * 5 4 3 15 15 O 1.21607 * 119.99897 * 4.66745 * 14 5 4 16 16 C 1.47636 * 119.99988 * 184.67428 * 14 5 4 17 17 C 1.40687 * 119.81346 * 323.53699 * 16 14 5 18 18 C 1.35671 * 120.91688 * 179.97438 * 17 16 14 19 19 C 1.40781 * 120.12534 * 0.02562 * 18 17 16 20 20 N 1.33640 * 120.82231 * 180.02562 * 19 18 17 21 21 C 1.31128 * 121.39697 * 180.02562 * 20 19 18 22 22 C 1.39317 * 121.77201 * 359.97438 * 21 20 19 23 23 C 1.36583 * 119.89956 * 0.02562 * 22 21 20 24 24 C 1.50701 * 120.91908 * 180.02562 * 23 22 21 25 25 C 1.40900 * 118.15934 * 0.02562 * 23 22 21 26 26 C 1.38644 * 119.81531 * 143.55358 * 16 14 5 27 27 H 1.09003 * 109.47136 * 300.00564 * 1 2 3 28 28 H 1.08998 * 109.47010 * 59.99677 * 1 2 3 29 29 H 1.08996 * 109.47529 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46752 * 59.99758 * 3 2 1 31 31 H 1.08995 * 109.46658 * 299.99766 * 3 2 1 32 32 H 1.09002 * 109.47222 * 304.99985 * 4 3 2 33 33 H 1.08997 * 109.46865 * 185.00221 * 4 3 2 34 34 H 0.96998 * 120.00290 * 180.02562 * 9 8 6 35 35 H 1.08001 * 119.54255 * 359.97438 * 17 16 14 36 36 H 1.08006 * 119.93996 * 179.97438 * 18 17 16 37 37 H 1.07997 * 119.11390 * 180.27853 * 21 20 19 38 38 H 1.07997 * 120.05272 * 180.02562 * 22 21 20 39 39 H 1.08998 * 109.47020 * 89.99987 * 24 23 22 40 40 H 1.09001 * 109.47127 * 210.00041 * 24 23 22 41 41 H 1.09001 * 109.47193 * 330.00280 * 24 23 22 42 42 H 1.08007 * 120.30145 * 0.02562 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5637 -1.2508 6 6 4.2048 -0.7847 -1.3026 7 1 3.8579 -1.3588 -2.1490 8 6 4.8830 -1.4154 -0.2654 9 7 5.5764 -0.7043 0.5942 10 14 4.8084 -3.2741 -0.0947 11 1 5.9213 -3.8869 -0.8634 12 1 4.9331 -3.6450 1.3378 13 1 3.5112 -3.7679 -0.6227 14 6 4.1580 1.3207 -2.3512 15 8 4.0380 2.5290 -2.2845 16 6 4.5021 0.6828 -3.6374 17 6 5.3500 -0.4396 -3.6567 18 6 5.6804 -1.0436 -4.8258 19 6 5.1751 -0.5499 -6.0436 20 7 5.4911 -1.1343 -7.2032 21 6 5.0273 -0.6837 -8.3439 22 6 4.1837 0.4232 -8.4069 23 6 3.8203 1.0685 -7.2593 24 6 2.9085 2.2677 -7.3007 25 6 4.3216 0.5820 -6.0356 26 6 3.9881 1.1936 -4.8194 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8507 0.5683 0.8427 33 1 3.9785 2.1764 0.0903 34 1 6.0498 -1.1442 1.3175 35 1 5.7434 -0.8260 -2.7281 36 1 6.3330 -1.9041 -4.8224 37 1 5.3029 -1.1871 -9.2588 38 1 3.8175 0.7705 -9.3617 39 1 1.8722 1.9390 -7.2218 40 1 3.1434 2.9316 -6.4688 41 1 3.0503 2.7997 -8.2414 42 1 3.3378 2.0558 -4.8033 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457208664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:22 Heat of formation + Delta-G solvation = -18.113756 kcal Electronic energy + Delta-G solvation = -26279.926854 eV Core-core repulsion = 22611.418708 eV Total energy + Delta-G solvation = -3668.508145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.57208 -38.90949 -37.14733 -36.03795 -34.90237 -34.38036 -31.72921 -30.66469 -29.87497 -29.00502 -27.63993 -25.90830 -25.04932 -24.01469 -23.08188 -21.93832 -20.64388 -19.61119 -18.16136 -17.48840 -16.40615 -16.13937 -15.79059 -15.51620 -15.18958 -14.50594 -14.41574 -14.35298 -14.22596 -13.91432 -13.70600 -13.36013 -13.19535 -12.94217 -12.87702 -12.58821 -12.18343 -12.00003 -11.71260 -11.40084 -11.31097 -11.21722 -11.09420 -11.01031 -10.84986 -10.67650 -10.41190 -10.14076 -9.88140 -9.27552 -9.16723 -9.03853 -8.63680 -8.27203 -7.79081 -7.51867 -6.44992 -4.13766 0.67161 1.14963 2.32551 3.06881 3.17018 3.21789 3.27899 3.98283 4.07338 4.41179 4.49486 4.59456 4.65877 4.74505 4.83525 4.99327 5.08510 5.32919 5.45703 5.54706 5.57062 5.60474 5.66626 5.75405 5.80103 5.84229 5.92800 5.96969 5.99624 6.06098 6.14054 6.22842 6.35414 6.44638 6.56144 6.64146 6.84174 6.92940 7.05631 7.15408 7.32365 7.41290 7.73841 7.91158 8.20403 8.27818 8.97638 9.35634 9.78892 10.57767 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.004907 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.609991 B = 5705.303043 C = 6807.892588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.119 3.881 5 N -0.415 5.415 6 C -0.327 4.327 7 H 0.090 0.910 8 C 0.050 3.950 9 N -0.858 5.858 10 Si 0.912 3.088 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.266 1.266 14 C 0.505 3.495 15 O -0.603 6.603 16 C -0.075 4.075 17 C -0.046 4.046 18 C -0.126 4.126 19 C 0.137 3.863 20 N -0.482 5.482 21 C 0.124 3.876 22 C -0.196 4.196 23 C -0.019 4.019 24 C -0.121 4.121 25 C -0.108 4.108 26 C -0.071 4.071 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.272 0.728 35 H 0.168 0.832 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.130 0.870 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.304 1.040 -9.367 10.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.027 4.027 4 C -0.005 4.005 5 N -0.131 5.131 6 C -0.455 4.455 7 H 0.108 0.892 8 C -0.157 4.157 9 N -0.493 5.493 10 Si 0.738 3.262 11 H -0.200 1.200 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.294 3.706 15 O -0.490 6.490 16 C -0.078 4.078 17 C -0.065 4.065 18 C -0.145 4.145 19 C 0.016 3.984 20 N -0.190 5.190 21 C -0.048 4.048 22 C -0.216 4.216 23 C -0.027 4.027 24 C -0.178 4.178 25 C -0.110 4.110 26 C -0.092 4.092 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.185 0.815 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.148 0.852 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.567 0.686 -8.938 10.060 hybrid contribution -0.904 -0.079 0.120 0.915 sum -5.471 0.607 -8.818 10.395 Atomic orbital electron populations 1.22647 0.83288 1.01811 0.98866 1.88128 1.17501 1.27677 1.95055 1.23050 0.96394 0.84411 0.98814 1.21420 0.89159 0.99239 0.90651 1.43147 1.55283 1.07377 1.07315 1.19346 1.35383 0.82302 1.08450 0.89215 1.25381 0.93916 1.00014 0.96412 1.69866 1.27003 1.36703 1.15732 0.86163 0.79177 0.82960 0.77916 1.20035 1.20658 1.19073 1.18280 0.81198 0.86099 0.84979 1.90625 1.57978 1.14027 1.86382 1.20133 0.97841 0.95903 0.93953 1.21935 0.93213 0.91874 0.99510 1.20715 1.02073 1.01833 0.89843 1.18991 0.94858 0.92065 0.92497 1.68003 1.22949 1.30131 0.97960 1.22793 0.92896 0.93174 0.95978 1.21592 1.02425 0.99040 0.98586 1.20164 0.94791 0.95586 0.92207 1.20883 0.98424 0.95059 1.03387 1.18587 1.00649 0.97933 0.93816 1.21277 0.98893 0.98879 0.90112 0.95092 0.94984 0.90368 0.94036 0.94081 0.87313 0.90797 0.91770 0.81494 0.84986 0.83081 0.85220 0.90393 0.90445 0.91001 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.53 10.43 -35.23 -0.37 -7.90 16 3 C 0.05 1.02 6.24 37.16 0.23 1.25 16 4 C 0.12 2.73 5.30 -4.05 -0.02 2.71 16 5 N -0.42 -10.13 2.44 -115.96 -0.28 -10.41 16 6 C -0.33 -7.95 5.86 -15.01 -0.09 -8.04 16 7 H 0.09 2.18 6.50 -52.49 -0.34 1.84 16 8 C 0.05 1.20 4.92 -17.45 -0.09 1.12 16 9 N -0.86 -21.64 11.63 55.50 0.65 -20.99 16 10 Si 0.91 19.23 29.58 -169.99 -5.03 14.20 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 13 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 14 C 0.50 12.28 7.30 -12.42 -0.09 12.19 16 15 O -0.60 -15.65 16.47 5.27 0.09 -15.56 16 16 C -0.08 -1.63 5.43 -104.99 -0.57 -2.20 16 17 C -0.05 -0.93 7.68 -39.58 -0.30 -1.24 16 18 C -0.13 -2.35 9.95 -39.54 -0.39 -2.75 16 19 C 0.14 2.52 6.61 -84.77 -0.56 1.96 16 20 N -0.48 -8.17 10.33 -10.91 -0.11 -8.29 16 21 C 0.12 1.67 11.15 -17.45 -0.19 1.47 16 22 C -0.20 -2.43 9.72 -39.78 -0.39 -2.82 16 23 C -0.02 -0.28 5.92 -104.21 -0.62 -0.89 16 24 C -0.12 -1.35 9.59 36.01 0.35 -1.00 16 25 C -0.11 -1.90 5.74 -106.82 -0.61 -2.51 16 26 C -0.07 -1.37 8.90 -38.71 -0.34 -1.71 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.11 2.66 5.84 -51.93 -0.30 2.35 16 33 H 0.07 1.71 7.53 -51.93 -0.39 1.32 16 34 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 35 H 0.17 3.64 5.70 -52.49 -0.30 3.35 16 36 H 0.13 2.24 8.06 -52.48 -0.42 1.81 16 37 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.91 6.52 -51.93 -0.34 0.57 16 41 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.13 2.37 6.38 -52.48 -0.33 2.04 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -29.68 351.43 -7.71 -37.40 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.37 Total: 7.12 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.58 Total: -0.86 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.25 Total: -39.69 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.28 Total: -23.46 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.68 -7.71 -37.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457208664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.283 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds