Wall clock time and date at job start Tue Mar 31 2020 11:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00313 * 2 1 4 4 C 1.52998 * 109.47017 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47142 * 64.99687 * 4 3 2 6 6 C 1.36855 * 120.00446 * 264.56208 * 5 4 3 7 7 H 1.07998 * 119.99458 * 136.94592 * 6 5 4 8 8 C 1.39058 * 120.00036 * 316.95803 * 6 5 4 9 9 N 1.31355 * 119.99937 * 343.79433 * 8 6 5 10 10 Si 1.86795 * 120.00169 * 163.80281 * 8 6 5 11 11 H 1.48500 * 109.47255 * 89.99367 * 10 8 6 12 12 H 1.48491 * 109.47310 * 209.99820 * 10 8 6 13 13 H 1.48509 * 109.46980 * 329.99524 * 10 8 6 14 14 C 1.34781 * 119.99757 * 84.57146 * 5 4 3 15 15 O 1.21607 * 119.99897 * 4.66745 * 14 5 4 16 16 C 1.47636 * 119.99988 * 184.67428 * 14 5 4 17 17 C 1.40687 * 119.81346 * 323.53699 * 16 14 5 18 18 C 1.35671 * 120.91688 * 179.97438 * 17 16 14 19 19 C 1.40781 * 120.12534 * 0.02562 * 18 17 16 20 20 N 1.33640 * 120.82231 * 180.02562 * 19 18 17 21 21 C 1.31128 * 121.39697 * 180.02562 * 20 19 18 22 22 C 1.39317 * 121.77201 * 359.97438 * 21 20 19 23 23 C 1.36583 * 119.89956 * 0.02562 * 22 21 20 24 24 C 1.50701 * 120.91908 * 180.02562 * 23 22 21 25 25 C 1.40900 * 118.15934 * 0.02562 * 23 22 21 26 26 C 1.38644 * 119.81531 * 143.55358 * 16 14 5 27 27 H 1.09003 * 109.47136 * 300.00564 * 1 2 3 28 28 H 1.08998 * 109.47010 * 59.99677 * 1 2 3 29 29 H 1.08996 * 109.47529 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46752 * 59.99758 * 3 2 1 31 31 H 1.08995 * 109.46658 * 299.99766 * 3 2 1 32 32 H 1.09002 * 109.47222 * 304.99985 * 4 3 2 33 33 H 1.08997 * 109.46865 * 185.00221 * 4 3 2 34 34 H 0.96998 * 120.00290 * 180.02562 * 9 8 6 35 35 H 1.08001 * 119.54255 * 359.97438 * 17 16 14 36 36 H 1.08006 * 119.93996 * 179.97438 * 18 17 16 37 37 H 1.07997 * 119.11390 * 180.27853 * 21 20 19 38 38 H 1.07997 * 120.05272 * 180.02562 * 22 21 20 39 39 H 1.08998 * 109.47020 * 89.99987 * 24 23 22 40 40 H 1.09001 * 109.47127 * 210.00041 * 24 23 22 41 41 H 1.09001 * 109.47193 * 330.00280 * 24 23 22 42 42 H 1.08007 * 120.30145 * 0.02562 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5637 -1.2508 6 6 4.2048 -0.7847 -1.3026 7 1 3.8579 -1.3588 -2.1490 8 6 4.8830 -1.4154 -0.2654 9 7 5.5764 -0.7043 0.5942 10 14 4.8084 -3.2741 -0.0947 11 1 5.9213 -3.8869 -0.8634 12 1 4.9331 -3.6450 1.3378 13 1 3.5112 -3.7679 -0.6227 14 6 4.1580 1.3207 -2.3512 15 8 4.0380 2.5290 -2.2845 16 6 4.5021 0.6828 -3.6374 17 6 5.3500 -0.4396 -3.6567 18 6 5.6804 -1.0436 -4.8258 19 6 5.1751 -0.5499 -6.0436 20 7 5.4911 -1.1343 -7.2032 21 6 5.0273 -0.6837 -8.3439 22 6 4.1837 0.4232 -8.4069 23 6 3.8203 1.0685 -7.2593 24 6 2.9085 2.2677 -7.3007 25 6 4.3216 0.5820 -6.0356 26 6 3.9881 1.1936 -4.8194 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8507 0.5683 0.8427 33 1 3.9785 2.1764 0.0903 34 1 6.0498 -1.1442 1.3175 35 1 5.7434 -0.8260 -2.7281 36 1 6.3330 -1.9041 -4.8224 37 1 5.3029 -1.1871 -9.2588 38 1 3.8175 0.7705 -9.3617 39 1 1.8722 1.9390 -7.2218 40 1 3.1434 2.9316 -6.4688 41 1 3.0503 2.7997 -8.2414 42 1 3.3378 2.0558 -4.8033 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457208664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:21 Heat of formation + Delta-G solvation = -35.754621 kcal Electronic energy + Delta-G solvation = -26280.691819 eV Core-core repulsion = 22611.418708 eV Total energy + Delta-G solvation = -3669.273111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.89695 -40.62431 -38.67051 -37.50304 -36.73411 -35.56345 -33.59561 -32.12111 -31.26702 -30.52457 -28.70614 -27.33328 -26.80968 -25.45865 -24.42707 -23.51970 -21.92899 -21.36518 -19.79854 -18.94865 -17.95496 -17.49561 -17.24338 -17.15297 -16.72888 -16.16037 -16.01949 -15.81330 -15.56131 -15.29632 -15.13903 -14.87256 -14.73676 -14.24034 -13.92852 -13.74991 -13.63174 -13.39623 -13.28070 -13.00856 -12.88688 -12.67294 -12.61897 -12.55472 -12.38236 -12.20357 -12.07937 -11.82219 -11.11470 -11.01459 -10.58389 -10.47166 -10.40080 -9.64963 -9.47578 -9.10052 -8.30611 -6.04564 -0.62876 -0.15865 0.98267 1.41834 1.47900 1.58633 1.68011 2.29889 2.36071 2.82377 2.97024 3.09223 3.24161 3.43830 3.59031 3.78032 3.87993 4.01243 4.21767 4.22299 4.25034 4.38695 4.49618 4.51807 4.55505 4.57972 4.59012 4.60401 4.74954 4.75366 4.82797 4.85758 5.01612 5.06737 5.17390 5.26562 5.29996 5.43582 5.47796 5.56873 5.66227 5.93440 5.97949 6.37835 6.39546 7.00225 7.09435 7.48984 7.92234 8.73368 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.004907 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.609991 B = 5705.303043 C = 6807.892588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.063 3.937 4 C 0.117 3.883 5 N -0.424 5.424 6 C -0.328 4.328 7 H 0.085 0.915 8 C 0.015 3.985 9 N -0.889 5.889 10 Si 0.969 3.031 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.268 1.268 14 C 0.496 3.504 15 O -0.631 6.631 16 C -0.113 4.113 17 C -0.058 4.058 18 C -0.124 4.124 19 C 0.124 3.876 20 N -0.511 5.511 21 C 0.135 3.865 22 C -0.179 4.179 23 C -0.026 4.026 24 C -0.120 4.120 25 C -0.126 4.126 26 C -0.058 4.058 27 H 0.054 0.946 28 H 0.038 0.962 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.273 0.727 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.196 0.804 38 H 0.179 0.821 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.607 0.423 -12.749 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.014 4.014 4 C -0.007 4.007 5 N -0.140 5.140 6 C -0.456 4.456 7 H 0.103 0.897 8 C -0.188 4.188 9 N -0.526 5.526 10 Si 0.793 3.207 11 H -0.192 1.192 12 H -0.205 1.205 13 H -0.193 1.193 14 C 0.286 3.714 15 O -0.521 6.521 16 C -0.116 4.116 17 C -0.078 4.078 18 C -0.143 4.143 19 C 0.003 3.997 20 N -0.221 5.221 21 C -0.036 4.036 22 C -0.199 4.199 23 C -0.034 4.034 24 C -0.176 4.176 25 C -0.129 4.129 26 C -0.078 4.078 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.212 0.788 38 H 0.196 0.804 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.122 0.878 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.880 0.061 -12.319 13.651 hybrid contribution -0.539 0.154 0.862 1.029 sum -6.419 0.214 -11.457 13.134 Atomic orbital electron populations 1.22887 0.80553 1.03347 1.00313 1.88061 1.20547 1.27768 1.95328 1.22829 0.94183 0.84698 0.99707 1.21383 0.91538 0.97955 0.89792 1.43329 1.55327 1.07583 1.07712 1.19370 1.35427 0.82284 1.08528 0.89698 1.26016 0.93407 1.03447 0.95968 1.69955 1.28063 1.38131 1.16427 0.85296 0.79073 0.78581 0.77760 1.19177 1.20489 1.19256 1.18780 0.80608 0.85933 0.86049 1.90567 1.59392 1.15075 1.87075 1.19996 1.00563 0.97591 0.93429 1.21585 0.94311 0.92514 0.99402 1.20804 1.01915 1.01751 0.89788 1.19082 0.95073 0.92493 0.93012 1.68061 1.24533 1.31099 0.98383 1.23681 0.90951 0.92812 0.96195 1.22123 1.00429 0.97507 0.99815 1.20577 0.94851 0.96589 0.91354 1.20969 0.98278 0.93778 1.04611 1.18800 1.01309 0.98120 0.94622 1.21387 0.97924 0.98405 0.90113 0.92769 0.94305 0.88864 0.91065 0.94992 0.88965 0.92066 0.91685 0.83711 0.83890 0.78763 0.80412 0.89150 0.91791 0.87761 0.84550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -16.52 10.43 -148.98 -1.55 -18.08 16 3 C 0.06 2.59 6.24 71.98 0.45 3.04 16 4 C 0.12 5.66 5.30 86.38 0.46 6.12 16 5 N -0.42 -21.85 2.44 -639.05 -1.56 -23.41 16 6 C -0.33 -16.74 5.86 84.11 0.49 -16.25 16 7 H 0.09 4.35 6.50 -2.91 -0.02 4.33 16 8 C 0.02 0.77 4.92 84.96 0.42 1.19 16 9 N -0.89 -46.83 11.63 21.68 0.25 -46.58 16 10 Si 0.97 40.39 29.58 68.60 2.03 42.42 16 11 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 12 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 13 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 14 C 0.50 25.54 7.30 86.72 0.63 26.17 16 15 O -0.63 -34.60 16.47 -4.05 -0.07 -34.66 16 16 C -0.11 -5.14 5.43 -20.10 -0.11 -5.25 16 17 C -0.06 -2.52 7.68 22.27 0.17 -2.35 16 18 C -0.12 -4.75 9.95 22.30 0.22 -4.53 16 19 C 0.12 4.48 6.61 40.36 0.27 4.75 16 20 N -0.51 -16.12 10.33 -188.43 -1.95 -18.07 16 21 C 0.14 3.01 11.15 85.06 0.95 3.96 16 22 C -0.18 -3.48 9.72 22.14 0.22 -3.27 16 23 C -0.03 -0.65 5.92 -19.60 -0.12 -0.76 16 24 C -0.12 -2.25 9.59 71.24 0.68 -1.57 16 25 C -0.13 -4.34 5.74 -21.29 -0.12 -4.46 16 26 C -0.06 -2.28 8.90 22.83 0.20 -2.08 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 4.75 5.84 -2.39 -0.01 4.74 16 33 H 0.06 3.03 7.53 -2.39 -0.02 3.01 16 34 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 35 H 0.15 6.82 5.70 -2.91 -0.02 6.80 16 36 H 0.14 4.96 8.06 -2.91 -0.02 4.93 16 37 H 0.20 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.39 6.52 -2.39 -0.02 1.38 16 41 H 0.10 1.29 8.10 -2.39 -0.02 1.27 16 42 H 0.14 5.04 6.38 -2.91 -0.02 5.03 16 Total: -1.00 -68.43 351.43 4.26 -64.17 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 1.04 Total: 27.52 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 6.06 Total: 6.69 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -3.25 Total: -88.06 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -1.62 Total: -52.74 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -68.43 4.26 -64.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457208664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.413 kcal (2) G-P(sol) polarization free energy of solvation -68.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds