Wall clock time and date at job start Tue Mar 31 2020 11:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35458 * 126.77373 * 2 1 4 4 C 1.41389 * 103.98327 * 180.09583 * 3 2 1 5 5 C 1.50696 * 126.79991 * 179.88891 * 4 3 2 6 6 N 1.46506 * 109.46753 * 94.71325 * 5 4 3 7 7 C 1.34776 * 119.99492 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00264 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99611 * 180.27515 * 7 6 5 10 10 C 1.53005 * 109.47164 * 179.72726 * 9 7 6 11 11 H 1.08996 * 109.46798 * 305.00230 * 10 9 7 12 12 C 1.50700 * 109.46889 * 64.99925 * 10 9 7 13 13 H 1.07997 * 120.00041 * 29.59030 * 12 10 9 14 14 C 1.37878 * 119.99919 * 209.58408 * 12 10 9 15 15 N 1.31516 * 120.00071 * 4.94048 * 14 12 10 16 16 Si 1.86800 * 119.99722 * 184.94314 * 14 12 10 17 17 H 1.48492 * 109.47492 * 90.00222 * 16 14 12 18 18 H 1.48501 * 109.46832 * 210.00265 * 16 14 12 19 19 H 1.48503 * 109.47380 * 329.99670 * 16 14 12 20 20 C 1.50700 * 109.47214 * 185.00120 * 10 9 7 21 21 C 1.38241 * 119.99896 * 296.77083 * 20 10 9 22 22 C 1.38227 * 119.99723 * 179.81240 * 21 20 10 23 23 C 1.38237 * 120.00201 * 0.39291 * 22 21 20 24 24 C 1.38234 * 119.99901 * 359.86021 * 23 22 21 25 25 C 1.38231 * 120.00200 * 359.95714 * 24 23 22 26 26 N 1.30177 * 106.39427 * 359.63022 * 4 3 2 27 27 O 1.20919 * 111.60495 * 0.23816 * 26 4 3 28 28 H 1.08997 * 109.46913 * 180.29326 * 1 2 3 29 29 H 1.08999 * 109.47250 * 300.29718 * 1 2 3 30 30 H 1.08999 * 109.47011 * 60.30238 * 1 2 3 31 31 H 1.07995 * 128.01141 * 359.96793 * 3 2 1 32 32 H 1.08997 * 109.47338 * 334.71831 * 5 4 3 33 33 H 1.08997 * 109.46877 * 214.70889 * 5 4 3 34 34 H 0.96993 * 120.00269 * 0.02562 * 6 5 4 35 35 H 1.09008 * 109.47363 * 299.72801 * 9 7 6 36 36 H 1.09003 * 109.47321 * 59.72794 * 9 7 6 37 37 H 0.96996 * 119.99760 * 179.97438 * 15 14 12 38 38 H 1.07997 * 119.99798 * 359.97438 * 21 20 10 39 39 H 1.08001 * 119.99989 * 180.23200 * 22 21 20 40 40 H 1.07998 * 120.00037 * 179.83400 * 23 22 21 41 41 H 1.08001 * 119.99898 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.00462 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 -0.0023 5 6 4.9211 1.3001 -0.0056 6 7 5.4025 1.4505 1.3699 7 6 6.5563 2.1035 1.6123 8 8 7.1958 2.5670 0.6919 9 6 7.0547 2.2528 3.0267 10 6 8.3774 3.0219 3.0229 11 1 9.0862 2.5223 2.3627 12 6 8.1397 4.4273 2.5334 13 1 7.1847 4.9031 2.7006 14 6 9.1416 5.1057 1.8724 15 7 10.2696 4.4945 1.5830 16 14 8.8968 6.8931 1.3879 17 1 9.3673 7.7730 2.4876 18 1 9.6733 7.1827 0.1557 19 1 7.4553 7.1446 1.1350 20 6 8.9375 3.0649 4.4212 21 6 8.2419 3.7130 5.4248 22 6 8.7539 3.7491 6.7083 23 6 9.9653 3.1441 6.9865 24 6 10.6634 2.5006 5.9818 25 6 10.1496 2.4612 4.6991 26 7 3.4764 -0.7563 0.0047 27 8 2.3096 -1.0735 0.0060 28 1 -0.3633 -1.0276 0.0053 29 1 -0.3634 0.5184 0.8873 30 1 -0.3633 0.5091 -0.8927 31 1 2.0345 2.1271 -0.0005 32 1 4.7632 2.2851 -0.4449 33 1 5.6608 0.7550 -0.5919 34 1 4.8913 1.0794 2.1059 35 1 6.3182 2.7994 3.6157 36 1 7.2094 1.2661 3.4635 37 1 10.9742 4.9717 1.1176 38 1 7.2973 4.1888 5.2066 39 1 8.2087 4.2522 7.4932 40 1 10.3666 3.1746 7.9887 41 1 11.6100 2.0283 6.1991 42 1 10.6948 1.9581 3.9142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527237071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:27 Heat of formation + Delta-G solvation = 43.315883 kcal Electronic energy + Delta-G solvation = -24966.179088 eV Core-core repulsion = 21300.334732 eV Total energy + Delta-G solvation = -3665.844356 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -45.13950 -39.09353 -38.18042 -35.53190 -34.00956 -33.77659 -32.80848 -31.42049 -29.99836 -29.09571 -28.09305 -27.15517 -25.17452 -23.26935 -22.66136 -21.60845 -20.39718 -20.20002 -19.20191 -17.82486 -17.44350 -16.65113 -16.26250 -15.82124 -15.40475 -14.88104 -14.51473 -14.36935 -14.12025 -13.97553 -13.82681 -13.62325 -13.09078 -13.02037 -12.83459 -12.53715 -12.45615 -12.24513 -11.95229 -11.67932 -11.60420 -11.25931 -10.86666 -10.68997 -10.57702 -10.50461 -10.24974 -10.02294 -9.56039 -9.41826 -9.10335 -8.83693 -8.62863 -8.31053 -8.03429 -7.60774 -5.90624 -3.90091 1.24182 1.92944 2.30004 2.35759 2.88252 3.38341 3.44319 3.46291 3.53909 3.75706 4.03005 4.23986 4.53079 4.76141 4.78563 4.93500 5.01931 5.06358 5.31857 5.39838 5.44306 5.60579 5.67259 5.74148 5.77519 5.81383 5.85526 5.94592 6.11681 6.20746 6.30541 6.42464 6.55056 6.79355 6.82616 6.92322 7.05374 7.32164 7.46438 7.54842 7.89983 7.96007 8.03231 8.07707 8.09511 8.40568 9.05655 9.09709 9.70808 11.19514 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.003268 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.728281 B = 8564.937416 C = 9783.793285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.221 4.221 4 C 0.008 3.992 5 C 0.202 3.798 6 N -0.746 5.746 7 C 0.514 3.486 8 O -0.491 6.491 9 C -0.120 4.120 10 C 0.079 3.921 11 H 0.073 0.927 12 C -0.491 4.491 13 H 0.050 0.950 14 C 0.076 3.924 15 N -0.880 5.880 16 Si 0.886 3.114 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.276 1.276 20 C -0.023 4.023 21 C -0.115 4.115 22 C -0.133 4.133 23 C -0.155 4.155 24 C -0.128 4.128 25 C -0.119 4.119 26 N -0.351 5.351 27 O 0.103 5.897 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.173 0.827 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.394 0.606 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.259 0.741 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 -8.270 1.741 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.243 4.243 4 C -0.151 4.151 5 C 0.077 3.923 6 N -0.404 5.404 7 C 0.301 3.699 8 O -0.361 6.361 9 C -0.160 4.160 10 C 0.060 3.940 11 H 0.091 0.909 12 C -0.529 4.529 13 H 0.069 0.931 14 C -0.127 4.127 15 N -0.517 5.517 16 Si 0.714 3.286 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.023 4.023 21 C -0.133 4.133 22 C -0.151 4.151 23 C -0.173 4.173 24 C -0.147 4.147 25 C -0.137 4.137 26 N -0.054 5.054 27 O 0.034 5.966 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.191 0.809 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.226 0.774 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.255 -8.897 0.928 17.684 hybrid contribution -0.610 1.798 0.069 1.900 sum -15.865 -7.098 0.998 17.409 Atomic orbital electron populations 1.20333 0.83965 1.04628 1.04151 1.24526 0.96423 0.86171 1.03078 1.22483 0.91191 1.01237 1.09366 1.23684 0.97495 0.89998 1.03885 1.19345 0.88231 0.98494 0.86199 1.46199 1.26170 1.60945 1.07036 1.20946 0.79303 0.76838 0.92848 1.90781 1.55095 1.44441 1.45801 1.21772 1.01519 1.00842 0.91905 1.17839 0.90769 0.96555 0.88868 0.90880 1.20678 0.98675 0.97610 1.35934 0.93134 1.24818 0.95462 0.97595 0.94787 1.69903 1.05727 1.35861 1.40221 0.86704 0.78074 0.85963 0.77858 1.20904 1.21348 1.20081 1.20760 0.93539 0.91392 0.96652 1.20953 1.00522 0.99578 0.92221 1.20977 0.96489 1.00808 0.96793 1.20798 0.96445 1.01780 0.98324 1.20987 0.99219 1.00643 0.93808 1.21106 0.96554 1.00461 0.95594 1.73910 0.96747 1.16429 1.18297 1.84845 1.11337 1.33291 1.67137 0.89921 0.89120 0.89177 0.80916 0.89457 0.90170 0.77356 0.90461 0.91570 0.93155 0.86852 0.87666 0.87805 0.87629 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.45 36.01 0.38 0.07 16 2 C -0.04 -0.33 7.49 -35.30 -0.26 -0.60 16 3 C -0.22 -2.19 11.06 -39.38 -0.44 -2.63 16 4 C 0.01 0.10 6.70 -82.10 -0.55 -0.45 16 5 C 0.20 2.94 6.26 -5.19 -0.03 2.91 16 6 N -0.75 -11.65 5.55 -61.47 -0.34 -11.99 16 7 C 0.51 10.35 7.58 -10.99 -0.08 10.26 16 8 O -0.49 -12.31 14.98 5.55 0.08 -12.23 16 9 C -0.12 -2.34 4.94 -27.88 -0.14 -2.48 16 10 C 0.08 1.89 1.68 -92.92 -0.16 1.73 16 11 H 0.07 2.02 6.95 -51.93 -0.36 1.66 16 12 C -0.49 -13.21 6.38 -34.44 -0.22 -13.43 16 13 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 14 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 15 N -0.88 -26.02 12.85 55.43 0.71 -25.31 16 16 Si 0.89 22.18 29.54 -169.99 -5.02 17.15 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 C -0.02 -0.51 4.77 -104.62 -0.50 -1.01 16 21 C -0.11 -2.32 8.86 -39.58 -0.35 -2.67 16 22 C -0.13 -2.39 10.05 -39.59 -0.40 -2.79 16 23 C -0.16 -2.73 10.05 -39.58 -0.40 -3.12 16 24 C -0.13 -2.40 10.05 -39.59 -0.40 -2.80 16 25 C -0.12 -2.54 9.67 -39.58 -0.38 -2.92 16 26 N -0.35 -4.78 12.07 33.42 0.40 -4.38 16 27 O 0.10 1.18 11.20 17.18 0.19 1.37 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.39 5.18 8.46 -40.82 -0.35 4.84 16 35 H 0.08 1.38 7.76 -51.92 -0.40 0.97 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 38 H 0.11 2.20 7.75 -52.49 -0.41 1.79 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.11 2.47 7.95 -52.49 -0.42 2.05 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -33.62 365.03 -8.20 -41.83 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.71 Total: 5.89 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -4.03 Total: -17.85 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.77 Total: -41.67 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.28 Total: -10.86 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.62 -8.20 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527237071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.142 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds