Wall clock time and date at job start Tue Mar 31 2020 11:37:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.35458 * 126.77373 * 2 1
4 4 C 1.41389 * 103.98327 * 180.09583 * 3 2 1
5 5 C 1.50696 * 126.79991 * 179.88891 * 4 3 2
6 6 N 1.46506 * 109.46753 * 94.71325 * 5 4 3
7 7 C 1.34776 * 119.99492 * 179.97438 * 6 5 4
8 8 O 1.21283 * 120.00264 * 0.02562 * 7 6 5
9 9 C 1.50700 * 119.99611 * 180.27515 * 7 6 5
10 10 C 1.53005 * 109.47164 * 179.72726 * 9 7 6
11 11 H 1.08996 * 109.46798 * 305.00230 * 10 9 7
12 12 C 1.50700 * 109.46889 * 64.99925 * 10 9 7
13 13 H 1.07997 * 120.00041 * 29.59030 * 12 10 9
14 14 C 1.37878 * 119.99919 * 209.58408 * 12 10 9
15 15 N 1.31516 * 120.00071 * 4.94048 * 14 12 10
16 16 Si 1.86800 * 119.99722 * 184.94314 * 14 12 10
17 17 H 1.48492 * 109.47492 * 90.00222 * 16 14 12
18 18 H 1.48501 * 109.46832 * 210.00265 * 16 14 12
19 19 H 1.48503 * 109.47380 * 329.99670 * 16 14 12
20 20 C 1.50700 * 109.47214 * 185.00120 * 10 9 7
21 21 C 1.38241 * 119.99896 * 296.77083 * 20 10 9
22 22 C 1.38227 * 119.99723 * 179.81240 * 21 20 10
23 23 C 1.38237 * 120.00201 * 0.39291 * 22 21 20
24 24 C 1.38234 * 119.99901 * 359.86021 * 23 22 21
25 25 C 1.38231 * 120.00200 * 359.95714 * 24 23 22
26 26 N 1.30177 * 106.39427 * 359.63022 * 4 3 2
27 27 O 1.20919 * 111.60495 * 0.23816 * 26 4 3
28 28 H 1.08997 * 109.46913 * 180.29326 * 1 2 3
29 29 H 1.08999 * 109.47250 * 300.29718 * 1 2 3
30 30 H 1.08999 * 109.47011 * 60.30238 * 1 2 3
31 31 H 1.07995 * 128.01141 * 359.96793 * 3 2 1
32 32 H 1.08997 * 109.47338 * 334.71831 * 5 4 3
33 33 H 1.08997 * 109.46877 * 214.70889 * 5 4 3
34 34 H 0.96993 * 120.00269 * 0.02562 * 6 5 4
35 35 H 1.09008 * 109.47363 * 299.72801 * 9 7 6
36 36 H 1.09003 * 109.47321 * 59.72794 * 9 7 6
37 37 H 0.96996 * 119.99760 * 179.97438 * 15 14 12
38 38 H 1.07997 * 119.99798 * 359.97438 * 21 20 10
39 39 H 1.08001 * 119.99989 * 180.23200 * 22 21 20
40 40 H 1.07998 * 120.00037 * 179.83400 * 23 22 21
41 41 H 1.08001 * 119.99898 * 179.97438 * 24 23 22
42 42 H 1.08001 * 120.00462 * 180.02562 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3179 1.0850 0.0000
4 6 3.6214 0.5373 -0.0023
5 6 4.9211 1.3001 -0.0056
6 7 5.4025 1.4505 1.3699
7 6 6.5563 2.1035 1.6123
8 8 7.1958 2.5670 0.6919
9 6 7.0547 2.2528 3.0267
10 6 8.3774 3.0219 3.0229
11 1 9.0862 2.5223 2.3627
12 6 8.1397 4.4273 2.5334
13 1 7.1847 4.9031 2.7006
14 6 9.1416 5.1057 1.8724
15 7 10.2696 4.4945 1.5830
16 14 8.8968 6.8931 1.3879
17 1 9.3673 7.7730 2.4876
18 1 9.6733 7.1827 0.1557
19 1 7.4553 7.1446 1.1350
20 6 8.9375 3.0649 4.4212
21 6 8.2419 3.7130 5.4248
22 6 8.7539 3.7491 6.7083
23 6 9.9653 3.1441 6.9865
24 6 10.6634 2.5006 5.9818
25 6 10.1496 2.4612 4.6991
26 7 3.4764 -0.7563 0.0047
27 8 2.3096 -1.0735 0.0060
28 1 -0.3633 -1.0276 0.0053
29 1 -0.3634 0.5184 0.8873
30 1 -0.3633 0.5091 -0.8927
31 1 2.0345 2.1271 -0.0005
32 1 4.7632 2.2851 -0.4449
33 1 5.6608 0.7550 -0.5919
34 1 4.8913 1.0794 2.1059
35 1 6.3182 2.7994 3.6157
36 1 7.2094 1.2661 3.4635
37 1 10.9742 4.9717 1.1176
38 1 7.2973 4.1888 5.2066
39 1 8.2087 4.2522 7.4932
40 1 10.3666 3.1746 7.9887
41 1 11.6100 2.0283 6.1991
42 1 10.6948 1.9581 3.9142
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000527237071.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:37:27
Heat of formation + Delta-G solvation = 43.315883 kcal
Electronic energy + Delta-G solvation = -24966.179088 eV
Core-core repulsion = 21300.334732 eV
Total energy + Delta-G solvation = -3665.844356 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 2.39 seconds
Orbital eigenvalues (eV)
-45.13950 -39.09353 -38.18042 -35.53190 -34.00956 -33.77659 -32.80848 -31.42049
-29.99836 -29.09571 -28.09305 -27.15517 -25.17452 -23.26935 -22.66136 -21.60845
-20.39718 -20.20002 -19.20191 -17.82486 -17.44350 -16.65113 -16.26250 -15.82124
-15.40475 -14.88104 -14.51473 -14.36935 -14.12025 -13.97553 -13.82681 -13.62325
-13.09078 -13.02037 -12.83459 -12.53715 -12.45615 -12.24513 -11.95229 -11.67932
-11.60420 -11.25931 -10.86666 -10.68997 -10.57702 -10.50461 -10.24974 -10.02294
-9.56039 -9.41826 -9.10335 -8.83693 -8.62863 -8.31053 -8.03429 -7.60774
-5.90624 -3.90091 1.24182 1.92944 2.30004 2.35759 2.88252 3.38341
3.44319 3.46291 3.53909 3.75706 4.03005 4.23986 4.53079 4.76141
4.78563 4.93500 5.01931 5.06358 5.31857 5.39838 5.44306 5.60579
5.67259 5.74148 5.77519 5.81383 5.85526 5.94592 6.11681 6.20746
6.30541 6.42464 6.55056 6.79355 6.82616 6.92322 7.05374 7.32164
7.46438 7.54842 7.89983 7.96007 8.03231 8.07707 8.09511 8.40568
9.05655 9.09709 9.70808 11.19514
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.013326 B = 0.003268 C = 0.002861
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2100.728281 B = 8564.937416 C = 9783.793285
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 C -0.039 4.039
3 C -0.221 4.221
4 C 0.008 3.992
5 C 0.202 3.798
6 N -0.746 5.746
7 C 0.514 3.486
8 O -0.491 6.491
9 C -0.120 4.120
10 C 0.079 3.921
11 H 0.073 0.927
12 C -0.491 4.491
13 H 0.050 0.950
14 C 0.076 3.924
15 N -0.880 5.880
16 Si 0.886 3.114
17 H -0.283 1.283
18 H -0.288 1.288
19 H -0.276 1.276
20 C -0.023 4.023
21 C -0.115 4.115
22 C -0.133 4.133
23 C -0.155 4.155
24 C -0.128 4.128
25 C -0.119 4.119
26 N -0.351 5.351
27 O 0.103 5.897
28 H 0.082 0.918
29 H 0.090 0.910
30 H 0.090 0.910
31 H 0.173 0.827
32 H 0.087 0.913
33 H 0.080 0.920
34 H 0.394 0.606
35 H 0.077 0.923
36 H 0.066 0.934
37 H 0.259 0.741
38 H 0.113 0.887
39 H 0.105 0.895
40 H 0.104 0.896
41 H 0.106 0.894
42 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.830 -8.270 1.741 18.833
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.102 4.102
3 C -0.243 4.243
4 C -0.151 4.151
5 C 0.077 3.923
6 N -0.404 5.404
7 C 0.301 3.699
8 O -0.361 6.361
9 C -0.160 4.160
10 C 0.060 3.940
11 H 0.091 0.909
12 C -0.529 4.529
13 H 0.069 0.931
14 C -0.127 4.127
15 N -0.517 5.517
16 Si 0.714 3.286
17 H -0.209 1.209
18 H -0.213 1.213
19 H -0.201 1.201
20 C -0.023 4.023
21 C -0.133 4.133
22 C -0.151 4.151
23 C -0.173 4.173
24 C -0.147 4.147
25 C -0.137 4.137
26 N -0.054 5.054
27 O 0.034 5.966
28 H 0.101 0.899
29 H 0.109 0.891
30 H 0.108 0.892
31 H 0.191 0.809
32 H 0.105 0.895
33 H 0.098 0.902
34 H 0.226 0.774
35 H 0.095 0.905
36 H 0.084 0.916
37 H 0.068 0.932
38 H 0.131 0.869
39 H 0.123 0.877
40 H 0.122 0.878
41 H 0.124 0.876
42 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -15.255 -8.897 0.928 17.684
hybrid contribution -0.610 1.798 0.069 1.900
sum -15.865 -7.098 0.998 17.409
Atomic orbital electron populations
1.20333 0.83965 1.04628 1.04151 1.24526 0.96423 0.86171 1.03078
1.22483 0.91191 1.01237 1.09366 1.23684 0.97495 0.89998 1.03885
1.19345 0.88231 0.98494 0.86199 1.46199 1.26170 1.60945 1.07036
1.20946 0.79303 0.76838 0.92848 1.90781 1.55095 1.44441 1.45801
1.21772 1.01519 1.00842 0.91905 1.17839 0.90769 0.96555 0.88868
0.90880 1.20678 0.98675 0.97610 1.35934 0.93134 1.24818 0.95462
0.97595 0.94787 1.69903 1.05727 1.35861 1.40221 0.86704 0.78074
0.85963 0.77858 1.20904 1.21348 1.20081 1.20760 0.93539 0.91392
0.96652 1.20953 1.00522 0.99578 0.92221 1.20977 0.96489 1.00808
0.96793 1.20798 0.96445 1.01780 0.98324 1.20987 0.99219 1.00643
0.93808 1.21106 0.96554 1.00461 0.95594 1.73910 0.96747 1.16429
1.18297 1.84845 1.11337 1.33291 1.67137 0.89921 0.89120 0.89177
0.80916 0.89457 0.90170 0.77356 0.90461 0.91570 0.93155 0.86852
0.87666 0.87805 0.87629 0.86776
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.31 10.45 36.01 0.38 0.07 16
2 C -0.04 -0.33 7.49 -35.30 -0.26 -0.60 16
3 C -0.22 -2.19 11.06 -39.38 -0.44 -2.63 16
4 C 0.01 0.10 6.70 -82.10 -0.55 -0.45 16
5 C 0.20 2.94 6.26 -5.19 -0.03 2.91 16
6 N -0.75 -11.65 5.55 -61.47 -0.34 -11.99 16
7 C 0.51 10.35 7.58 -10.99 -0.08 10.26 16
8 O -0.49 -12.31 14.98 5.55 0.08 -12.23 16
9 C -0.12 -2.34 4.94 -27.88 -0.14 -2.48 16
10 C 0.08 1.89 1.68 -92.92 -0.16 1.73 16
11 H 0.07 2.02 6.95 -51.93 -0.36 1.66 16
12 C -0.49 -13.21 6.38 -34.44 -0.22 -13.43 16
13 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16
14 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16
15 N -0.88 -26.02 12.85 55.43 0.71 -25.31 16
16 Si 0.89 22.18 29.54 -169.99 -5.02 17.15 16
17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16
18 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16
19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
20 C -0.02 -0.51 4.77 -104.62 -0.50 -1.01 16
21 C -0.11 -2.32 8.86 -39.58 -0.35 -2.67 16
22 C -0.13 -2.39 10.05 -39.59 -0.40 -2.79 16
23 C -0.16 -2.73 10.05 -39.58 -0.40 -3.12 16
24 C -0.13 -2.40 10.05 -39.59 -0.40 -2.80 16
25 C -0.12 -2.54 9.67 -39.58 -0.38 -2.92 16
26 N -0.35 -4.78 12.07 33.42 0.40 -4.38 16
27 O 0.10 1.18 11.20 17.18 0.19 1.37 16
28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16
29 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16
30 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16
31 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16
32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16
33 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16
34 H 0.39 5.18 8.46 -40.82 -0.35 4.84 16
35 H 0.08 1.38 7.76 -51.92 -0.40 0.97 16
36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
37 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16
38 H 0.11 2.20 7.75 -52.49 -0.41 1.79 16
39 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16
40 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16
41 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16
42 H 0.11 2.47 7.95 -52.49 -0.42 2.05 16
LS Contribution 365.03 15.07 5.50 5.50
Total: -1.00 -33.62 365.03 -8.20 -41.83
By element:
Atomic # 1 Polarization: 11.60 SS G_CDS: -5.71 Total: 5.89 kcal
Atomic # 6 Polarization: -13.82 SS G_CDS: -4.03 Total: -17.85 kcal
Atomic # 7 Polarization: -42.45 SS G_CDS: 0.77 Total: -41.67 kcal
Atomic # 8 Polarization: -11.13 SS G_CDS: 0.28 Total: -10.86 kcal
Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -33.62 -8.20 -41.83 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000527237071.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.142 kcal
(2) G-P(sol) polarization free energy of solvation -33.622 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.520 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.316 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.39 seconds