Wall clock time and date at job start Tue Mar 31 2020 11:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35458 * 126.77373 * 2 1 4 4 C 1.41389 * 103.98327 * 180.09583 * 3 2 1 5 5 C 1.50696 * 126.79991 * 179.88891 * 4 3 2 6 6 N 1.46506 * 109.46753 * 94.71325 * 5 4 3 7 7 C 1.34776 * 119.99492 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00264 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99611 * 180.27515 * 7 6 5 10 10 C 1.53005 * 109.47164 * 179.72726 * 9 7 6 11 11 H 1.08996 * 109.46798 * 305.00230 * 10 9 7 12 12 C 1.50700 * 109.46889 * 64.99925 * 10 9 7 13 13 H 1.07997 * 120.00041 * 29.59030 * 12 10 9 14 14 C 1.37878 * 119.99919 * 209.58408 * 12 10 9 15 15 N 1.31516 * 120.00071 * 4.94048 * 14 12 10 16 16 Si 1.86800 * 119.99722 * 184.94314 * 14 12 10 17 17 H 1.48492 * 109.47492 * 90.00222 * 16 14 12 18 18 H 1.48501 * 109.46832 * 210.00265 * 16 14 12 19 19 H 1.48503 * 109.47380 * 329.99670 * 16 14 12 20 20 C 1.50700 * 109.47214 * 185.00120 * 10 9 7 21 21 C 1.38241 * 119.99896 * 296.77083 * 20 10 9 22 22 C 1.38227 * 119.99723 * 179.81240 * 21 20 10 23 23 C 1.38237 * 120.00201 * 0.39291 * 22 21 20 24 24 C 1.38234 * 119.99901 * 359.86021 * 23 22 21 25 25 C 1.38231 * 120.00200 * 359.95714 * 24 23 22 26 26 N 1.30177 * 106.39427 * 359.63022 * 4 3 2 27 27 O 1.20919 * 111.60495 * 0.23816 * 26 4 3 28 28 H 1.08997 * 109.46913 * 180.29326 * 1 2 3 29 29 H 1.08999 * 109.47250 * 300.29718 * 1 2 3 30 30 H 1.08999 * 109.47011 * 60.30238 * 1 2 3 31 31 H 1.07995 * 128.01141 * 359.96793 * 3 2 1 32 32 H 1.08997 * 109.47338 * 334.71831 * 5 4 3 33 33 H 1.08997 * 109.46877 * 214.70889 * 5 4 3 34 34 H 0.96993 * 120.00269 * 0.02562 * 6 5 4 35 35 H 1.09008 * 109.47363 * 299.72801 * 9 7 6 36 36 H 1.09003 * 109.47321 * 59.72794 * 9 7 6 37 37 H 0.96996 * 119.99760 * 179.97438 * 15 14 12 38 38 H 1.07997 * 119.99798 * 359.97438 * 21 20 10 39 39 H 1.08001 * 119.99989 * 180.23200 * 22 21 20 40 40 H 1.07998 * 120.00037 * 179.83400 * 23 22 21 41 41 H 1.08001 * 119.99898 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.00462 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 -0.0023 5 6 4.9211 1.3001 -0.0056 6 7 5.4025 1.4505 1.3699 7 6 6.5563 2.1035 1.6123 8 8 7.1958 2.5670 0.6919 9 6 7.0547 2.2528 3.0267 10 6 8.3774 3.0219 3.0229 11 1 9.0862 2.5223 2.3627 12 6 8.1397 4.4273 2.5334 13 1 7.1847 4.9031 2.7006 14 6 9.1416 5.1057 1.8724 15 7 10.2696 4.4945 1.5830 16 14 8.8968 6.8931 1.3879 17 1 9.3673 7.7730 2.4876 18 1 9.6733 7.1827 0.1557 19 1 7.4553 7.1446 1.1350 20 6 8.9375 3.0649 4.4212 21 6 8.2419 3.7130 5.4248 22 6 8.7539 3.7491 6.7083 23 6 9.9653 3.1441 6.9865 24 6 10.6634 2.5006 5.9818 25 6 10.1496 2.4612 4.6991 26 7 3.4764 -0.7563 0.0047 27 8 2.3096 -1.0735 0.0060 28 1 -0.3633 -1.0276 0.0053 29 1 -0.3634 0.5184 0.8873 30 1 -0.3633 0.5091 -0.8927 31 1 2.0345 2.1271 -0.0005 32 1 4.7632 2.2851 -0.4449 33 1 5.6608 0.7550 -0.5919 34 1 4.8913 1.0794 2.1059 35 1 6.3182 2.7994 3.6157 36 1 7.2094 1.2661 3.4635 37 1 10.9742 4.9717 1.1176 38 1 7.2973 4.1888 5.2066 39 1 8.2087 4.2522 7.4932 40 1 10.3666 3.1746 7.9887 41 1 11.6100 2.0283 6.1991 42 1 10.6948 1.9581 3.9142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527237071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:27 Heat of formation + Delta-G solvation = 22.389696 kcal Electronic energy + Delta-G solvation = -24967.086516 eV Core-core repulsion = 21300.334732 eV Total energy + Delta-G solvation = -3666.751784 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.03686 -40.71185 -39.71710 -36.78754 -35.72918 -34.64547 -33.94637 -33.35874 -31.50551 -30.59651 -28.80011 -28.45772 -26.98409 -24.47683 -24.03924 -23.13375 -21.76292 -21.38233 -20.78025 -18.75019 -18.54306 -18.32635 -17.88805 -17.19885 -16.90645 -16.37478 -16.28649 -15.69707 -15.44770 -15.34492 -14.83207 -14.59765 -14.35843 -13.99929 -13.95190 -13.93762 -13.79087 -13.60457 -13.38515 -13.18982 -13.15264 -12.81947 -12.52806 -12.46626 -12.14562 -11.83900 -11.69471 -11.49860 -11.28603 -10.98537 -10.61048 -10.39680 -10.28282 -10.07111 -9.54584 -9.20059 -8.02100 -6.05332 0.44541 0.77605 0.83316 1.03668 1.37867 1.39388 1.46975 1.91698 2.19057 2.44967 2.47345 3.01638 3.18500 3.36674 3.45105 4.04942 4.09472 4.24924 4.26027 4.31017 4.35958 4.40661 4.54754 4.55145 4.61704 4.64583 4.74338 4.78471 4.91851 4.92678 4.96461 4.98855 5.20997 5.27909 5.37750 5.43652 5.51700 5.67316 5.79276 5.83518 5.95666 6.18411 6.41745 6.46411 6.65219 7.02268 7.23816 7.50254 7.57260 9.07619 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.003268 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.728281 B = 8564.937416 C = 9783.793285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.022 4.022 3 C -0.229 4.229 4 C -0.006 4.006 5 C 0.205 3.795 6 N -0.725 5.725 7 C 0.514 3.486 8 O -0.550 6.550 9 C -0.114 4.114 10 C 0.081 3.919 11 H 0.023 0.977 12 C -0.484 4.484 13 H 0.049 0.951 14 C 0.020 3.980 15 N -0.918 5.918 16 Si 0.937 3.063 17 H -0.275 1.275 18 H -0.293 1.293 19 H -0.269 1.269 20 C -0.047 4.047 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.147 4.147 24 C -0.129 4.129 25 C -0.145 4.145 26 N -0.383 5.383 27 O 0.100 5.900 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.194 0.806 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.409 0.591 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.253 0.747 38 H 0.119 0.881 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.131 0.869 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.637 -7.901 4.305 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 C -0.251 4.251 4 C -0.164 4.164 5 C 0.081 3.919 6 N -0.381 5.381 7 C 0.302 3.698 8 O -0.425 6.425 9 C -0.154 4.154 10 C 0.062 3.938 11 H 0.041 0.959 12 C -0.522 4.522 13 H 0.067 0.933 14 C -0.179 4.179 15 N -0.558 5.558 16 Si 0.764 3.236 17 H -0.201 1.201 18 H -0.219 1.219 19 H -0.193 1.193 20 C -0.048 4.048 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.165 4.165 24 C -0.147 4.147 25 C -0.164 4.164 26 N -0.086 5.086 27 O 0.031 5.969 28 H 0.113 0.887 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.211 0.789 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.244 0.756 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.137 0.863 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.123 -8.552 3.525 20.347 hybrid contribution 0.147 1.564 -0.659 1.704 sum -17.976 -6.988 2.866 19.498 Atomic orbital electron populations 1.20611 0.80414 1.06077 1.05860 1.25328 0.98053 0.84807 1.00377 1.22725 0.89837 1.02642 1.09854 1.23489 0.97555 0.90113 1.05201 1.19238 0.89002 0.98662 0.85026 1.45915 1.24754 1.59164 1.08289 1.21078 0.79817 0.76399 0.92505 1.90763 1.57079 1.47400 1.47298 1.21670 0.99887 1.01808 0.92072 1.17616 0.91761 0.95110 0.89293 0.95884 1.20986 0.97976 0.98696 1.34558 0.93250 1.25535 0.95612 1.01063 0.95681 1.70066 1.06615 1.37010 1.42119 0.85877 0.78084 0.82198 0.77413 1.20065 1.21929 1.19344 1.20576 0.94440 0.93568 0.96202 1.21064 1.00846 0.99613 0.92898 1.21388 0.96660 0.99859 0.96513 1.21272 0.95803 0.99784 0.99660 1.21281 1.00242 1.00434 0.92756 1.21113 0.96743 1.01768 0.96732 1.73906 0.98101 1.16938 1.19697 1.84807 1.10982 1.34281 1.66866 0.88671 0.87240 0.87316 0.78876 0.89394 0.92104 0.75554 0.88147 0.89287 0.93838 0.86338 0.83995 0.83840 0.85123 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 71.24 0.74 0.39 16 2 C -0.02 -0.33 7.49 25.04 0.19 -0.15 16 3 C -0.23 -4.13 11.06 22.40 0.25 -3.88 16 4 C -0.01 -0.15 6.70 43.58 0.29 0.14 16 5 C 0.21 6.16 6.26 85.63 0.54 6.70 16 6 N -0.72 -22.82 5.55 -466.79 -2.59 -25.41 16 7 C 0.51 21.35 7.58 87.66 0.66 22.01 16 8 O -0.55 -29.14 14.98 -3.04 -0.05 -29.19 16 9 C -0.11 -4.51 4.94 29.85 0.15 -4.36 16 10 C 0.08 4.06 1.68 -12.28 -0.02 4.04 16 11 H 0.02 1.36 6.95 -2.39 -0.02 1.35 16 12 C -0.48 -26.74 6.38 25.60 0.16 -26.58 16 13 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 14 C 0.02 1.14 5.45 84.65 0.46 1.60 16 15 N -0.92 -57.20 12.85 21.45 0.28 -56.93 16 16 Si 0.94 46.56 29.54 68.60 2.03 48.59 16 17 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 18 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 19 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 20 C -0.05 -2.13 4.77 -19.86 -0.09 -2.23 16 21 C -0.13 -4.91 8.86 22.27 0.20 -4.72 16 22 C -0.13 -4.10 10.05 22.27 0.22 -3.88 16 23 C -0.15 -4.61 10.05 22.27 0.22 -4.39 16 24 C -0.13 -4.61 10.05 22.27 0.22 -4.38 16 25 C -0.15 -6.35 9.67 22.27 0.22 -6.14 16 26 N -0.38 -10.36 12.07 -49.55 -0.60 -10.96 16 27 O 0.10 2.16 11.20 71.63 0.80 2.97 16 28 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.41 10.43 8.46 -92.71 -0.78 9.65 16 35 H 0.10 3.47 7.76 -2.38 -0.02 3.45 16 36 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.12 4.39 7.75 -2.91 -0.02 4.36 16 39 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 41 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.09 4.30 7.95 -2.91 -0.02 4.28 16 Total: -1.00 -77.99 365.03 4.53 -73.46 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.25 Total: 23.27 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 4.41 Total: -25.80 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -2.91 Total: -93.30 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: 0.76 Total: -26.22 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -77.99 4.53 -73.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527237071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.849 kcal (2) G-P(sol) polarization free energy of solvation -77.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds