Wall clock time and date at job start Tue Mar 31 2020 11:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34327 * 126.44532 * 2 1 4 4 N 1.34482 * 107.66612 * 179.76244 * 3 2 1 5 5 C 1.30247 * 108.70341 * 0.42670 * 4 3 2 6 6 C 1.50704 * 125.62222 * 179.83718 * 5 4 3 7 7 C 1.53001 * 109.46786 * 89.68913 * 6 5 4 8 8 C 1.53004 * 109.46921 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47130 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00369 * 0.02562 * 9 8 7 11 11 N 1.34786 * 120.00039 * 179.97438 * 9 8 7 12 12 C 1.39120 * 119.99860 * 184.37270 * 11 9 8 13 13 C 1.38647 * 120.28887 * 325.34680 * 12 11 9 14 14 C 1.38223 * 120.03661 * 180.26219 * 13 12 11 15 15 C 1.38864 * 120.61570 * 359.73851 * 14 13 12 16 16 C 1.36475 * 120.57506 * 0.02562 * 15 14 13 17 17 C 1.40732 * 119.94463 * 359.97438 * 16 15 14 18 18 C 1.41067 * 120.30097 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00158 * 154.83018 * 18 17 16 20 20 C 1.39960 * 120.00035 * 334.81866 * 18 17 16 21 21 N 1.30850 * 120.00172 * 334.82627 * 20 18 17 22 22 Si 1.86797 * 119.99964 * 154.81633 * 20 18 17 23 23 H 1.48493 * 109.47433 * 180.02562 * 22 20 18 24 24 H 1.48507 * 109.47399 * 300.00688 * 22 20 18 25 25 H 1.48501 * 109.46727 * 60.00450 * 22 20 18 26 26 O 1.33973 * 108.76333 * 359.57124 * 5 4 3 27 27 H 1.08999 * 109.47051 * 269.97638 * 1 2 3 28 28 H 1.08997 * 109.46557 * 29.97992 * 1 2 3 29 29 H 1.09008 * 109.46863 * 149.97674 * 1 2 3 30 30 H 1.07991 * 126.16352 * 0.02562 * 3 2 1 31 31 H 1.08995 * 109.46666 * 329.69501 * 6 5 4 32 32 H 1.08991 * 109.47229 * 209.68663 * 6 5 4 33 33 H 1.09001 * 109.47481 * 60.00802 * 7 6 5 34 34 H 1.09001 * 109.47491 * 299.99662 * 7 6 5 35 35 H 1.09004 * 109.46955 * 59.99934 * 8 7 6 36 36 H 1.08999 * 109.47357 * 300.00325 * 8 7 6 37 37 H 0.96996 * 119.99503 * 4.37567 * 11 9 8 38 38 H 1.08002 * 119.97971 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.69606 * 179.76870 * 14 13 12 40 40 H 1.07997 * 119.71651 * 180.02562 * 15 14 13 41 41 H 1.08000 * 120.02277 * 180.02562 * 16 15 14 42 42 H 0.97005 * 119.99936 * 354.62807 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6476 0.0053 5 6 3.5765 -0.6548 -0.0007 6 6 4.8004 -1.5342 -0.0012 7 6 5.2149 -1.8320 1.4412 8 6 6.4579 -2.7242 1.4407 9 6 6.8666 -3.0170 2.8613 10 8 6.2265 -2.5578 3.7834 11 7 7.9429 -3.7902 3.1072 12 6 8.2670 -4.1355 4.4153 13 6 8.0428 -3.2411 5.4507 14 6 8.3718 -3.5875 6.7477 15 6 8.9230 -4.8305 7.0296 16 6 9.1500 -5.7320 6.0303 17 6 8.8239 -5.4042 4.7011 18 6 9.0558 -6.3301 3.6624 19 1 8.4715 -6.2816 2.7554 20 6 10.0433 -7.3113 3.8071 21 7 11.0531 -7.1093 4.6143 22 14 9.9195 -8.9095 2.8480 23 1 11.0805 -9.7751 3.1764 24 1 8.6617 -9.6096 3.2127 25 1 9.9176 -8.6143 1.3926 26 8 2.3075 -1.0841 -0.0004 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3632 0.8902 -0.5135 29 1 -0.3633 -0.8899 -0.5142 30 1 1.9822 2.1111 0.0004 31 1 5.6146 -1.0232 -0.5150 32 1 4.5761 -2.4688 -0.5150 33 1 4.4008 -2.3429 1.9552 34 1 5.4394 -0.8973 1.9552 35 1 7.2720 -2.2129 0.9269 36 1 6.2340 -3.6589 0.9266 37 1 8.4914 -4.1058 2.3721 38 1 7.6150 -2.2714 5.2430 39 1 8.1983 -2.8851 7.5495 40 1 9.1743 -5.0862 8.0483 41 1 9.5787 -6.6963 6.2597 42 1 11.1594 -6.2505 5.0526 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583762407.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:18 Heat of formation + Delta-G solvation = -37.160601 kcal Electronic energy + Delta-G solvation = -24501.339605 eV Core-core repulsion = 20832.005526 eV Total energy + Delta-G solvation = -3669.334079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -44.33673 -41.25493 -39.26157 -36.34810 -35.78919 -35.60864 -35.45535 -33.28781 -31.25923 -30.98994 -29.55060 -27.11362 -26.59807 -24.33558 -23.30438 -22.97267 -22.38753 -21.78616 -20.96359 -19.83915 -18.44595 -17.91013 -17.80264 -17.51086 -16.90814 -16.59001 -16.01336 -15.72466 -15.61933 -15.22093 -15.10701 -14.57640 -14.51552 -14.18219 -14.16483 -13.93275 -13.84419 -13.38286 -13.28055 -13.14370 -12.89810 -12.66670 -12.57824 -12.43356 -12.31899 -12.13607 -11.94528 -11.77802 -11.56243 -11.47261 -11.06354 -10.80842 -10.55458 -9.62837 -9.55031 -9.28576 -8.80224 -6.40015 0.41651 0.77523 0.91700 1.55402 1.62905 1.67395 1.70979 1.81037 1.83079 2.35516 2.45640 2.71236 3.10805 3.54825 3.74340 3.82434 3.98674 4.00235 4.10540 4.30063 4.34857 4.39588 4.43064 4.59474 4.60856 4.65167 4.65910 4.71295 4.79569 4.95811 5.04360 5.07905 5.09317 5.18064 5.23964 5.32192 5.35481 5.50260 5.69296 5.79091 5.94145 6.03773 6.13807 6.35733 6.65458 6.72076 6.90053 6.93316 7.42149 8.06744 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.002543 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.332617 B =11009.070061 C =12017.987138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.056 4.056 3 C -0.066 4.066 4 N -0.512 5.512 5 C 0.180 3.820 6 C -0.016 4.016 7 C -0.090 4.090 8 C -0.123 4.123 9 C 0.491 3.509 10 O -0.584 6.584 11 N -0.638 5.638 12 C 0.003 3.997 13 C -0.091 4.091 14 C -0.245 4.245 15 C -0.098 4.098 16 C -0.229 4.229 17 C 0.063 3.937 18 C -0.541 4.541 19 H 0.085 0.915 20 C 0.006 3.994 21 N -0.815 5.815 22 Si 1.115 2.885 23 H -0.277 1.277 24 H -0.270 1.270 25 H -0.249 1.249 26 O -0.216 6.216 27 H 0.093 0.907 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.205 0.795 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.414 0.586 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.838 8.291 -14.245 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.109 4.109 3 C -0.204 4.204 4 N -0.242 5.242 5 C -0.026 4.026 6 C -0.053 4.053 7 C -0.129 4.129 8 C -0.162 4.162 9 C 0.281 3.719 10 O -0.465 6.465 11 N -0.281 5.281 12 C -0.092 4.092 13 C -0.111 4.111 14 C -0.264 4.264 15 C -0.116 4.116 16 C -0.249 4.249 17 C 0.058 3.942 18 C -0.569 4.569 19 H 0.103 0.897 20 C -0.211 4.211 21 N -0.438 5.438 22 Si 0.933 3.067 23 H -0.202 1.202 24 H -0.196 1.196 25 H -0.173 1.173 26 O -0.104 6.104 27 H 0.111 0.889 28 H 0.135 0.865 29 H 0.104 0.896 30 H 0.222 0.778 31 H 0.145 0.855 32 H 0.139 0.861 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.251 0.749 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.113 0.887 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.990 7.500 -13.846 20.414 hybrid contribution -0.909 1.228 0.755 1.704 sum -13.899 8.728 -13.092 20.994 Atomic orbital electron populations 1.20493 0.81035 1.05871 1.04872 1.24309 0.96756 0.83975 1.05830 1.23563 0.87392 1.01810 1.07606 1.70413 1.24525 1.10091 1.19133 1.26785 0.84983 0.90531 1.00303 1.20257 0.88627 0.98478 0.97976 1.21149 0.96913 0.99573 0.95266 1.21634 0.99966 1.03603 0.91000 1.21679 0.79013 0.77822 0.93354 1.90632 1.54953 1.52667 1.48208 1.42939 1.27952 1.50179 1.07065 1.17805 1.12698 0.93727 0.84957 1.20872 0.99156 0.98065 0.93018 1.20590 1.11161 0.98622 0.96047 1.20646 0.98487 0.94209 0.98285 1.20793 1.11386 0.99687 0.93013 1.17840 0.92731 0.90069 0.93524 1.20530 1.19216 1.13569 1.03538 0.89729 1.28366 0.90542 1.06081 0.96132 1.70577 1.25627 1.26966 1.20643 0.83014 0.77247 0.70388 0.76088 1.20244 1.19557 1.17256 1.84406 1.18342 1.37593 1.70066 0.88876 0.86504 0.89648 0.77795 0.85531 0.86057 0.92858 0.92745 0.85307 0.85542 0.74930 0.87397 0.86791 0.86761 0.88707 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.43 71.24 0.74 0.12 16 2 C -0.06 -1.09 7.39 24.79 0.18 -0.90 16 3 C -0.07 -1.40 11.80 83.39 0.98 -0.41 16 4 N -0.51 -13.54 11.29 -303.83 -3.43 -16.97 16 5 C 0.18 4.33 7.60 88.34 0.67 5.00 16 6 C -0.02 -0.27 5.84 29.85 0.17 -0.10 16 7 C -0.09 -2.10 4.49 30.60 0.14 -1.96 16 8 C -0.12 -2.66 5.70 29.85 0.17 -2.49 16 9 C 0.49 17.59 7.67 87.65 0.67 18.27 16 10 O -0.58 -26.07 13.40 -3.03 -0.04 -26.11 16 11 N -0.64 -25.00 4.90 -302.28 -1.48 -26.48 16 12 C 0.00 0.14 6.33 38.88 0.25 0.38 16 13 C -0.09 -4.45 8.69 22.36 0.19 -4.25 16 14 C -0.24 -11.46 10.04 22.42 0.22 -11.24 16 15 C -0.10 -4.63 9.97 22.01 0.22 -4.41 16 16 C -0.23 -11.85 7.87 22.47 0.18 -11.68 16 17 C 0.06 3.24 5.32 -21.18 -0.11 3.13 16 18 C -0.54 -26.63 8.35 23.38 0.20 -26.43 16 19 H 0.08 3.87 7.39 -2.91 -0.02 3.84 16 20 C 0.01 0.28 4.95 85.26 0.42 0.70 16 21 N -0.82 -42.07 12.32 21.83 0.27 -41.80 16 22 Si 1.12 40.14 30.00 68.60 2.06 42.20 16 23 H -0.28 -10.09 7.11 99.48 0.71 -9.38 16 24 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 25 H -0.25 -7.84 7.11 99.48 0.71 -7.13 16 26 O -0.22 -5.20 10.78 -3.85 -0.04 -5.24 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.21 2.95 8.06 -2.92 -0.02 2.92 16 31 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 34 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.41 14.03 7.95 -92.71 -0.74 13.29 16 38 H 0.11 5.28 6.20 -2.91 -0.02 5.26 16 39 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 41 H 0.09 5.07 6.45 -2.91 -0.02 5.05 16 42 H 0.28 15.42 6.62 -92.70 -0.61 14.81 16 Total: -1.00 -72.52 358.42 3.10 -69.42 By element: Atomic # 1 Polarization: 40.80 SS G_CDS: 0.47 Total: 41.26 kcal Atomic # 6 Polarization: -41.58 SS G_CDS: 5.30 Total: -36.28 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -4.64 Total: -85.25 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.08 Total: -31.35 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.06 Total: 42.20 kcal Total: -72.52 3.10 -69.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583762407.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.259 kcal (2) G-P(sol) polarization free energy of solvation -72.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds