Wall clock time and date at job start Tue Mar 31 2020 10:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39916 * 125.99782 * 2 1 4 4 C 1.38322 * 107.12590 * 179.97438 * 3 2 1 5 5 C 1.41355 * 131.73271 * 180.02562 * 4 3 2 6 6 C 1.35517 * 119.55326 * 179.97438 * 5 4 3 7 7 C 1.46456 * 118.96020 * 359.97438 * 6 5 4 8 8 C 1.47494 * 120.19884 * 179.97438 * 7 6 5 9 9 O 1.21595 * 119.99717 * 187.72525 * 8 7 6 10 10 N 1.34777 * 119.99586 * 7.72941 * 8 7 6 11 11 C 1.47427 * 125.64212 * 174.96925 * 10 8 7 12 12 C 1.54908 * 104.82907 * 203.86173 * 11 10 8 13 13 C 1.55159 * 101.58053 * 322.98668 * 12 11 10 14 14 O 1.42898 * 110.72173 * 277.13659 * 13 12 11 15 15 C 1.50703 * 110.71811 * 154.04357 * 13 12 11 16 16 H 1.07999 * 120.00050 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99837 * 180.02562 * 15 13 12 18 18 N 1.31506 * 120.00155 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99872 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47142 * 60.00024 * 19 17 15 21 21 H 1.48496 * 109.46953 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46854 * 300.00090 * 19 17 15 23 23 C 1.47022 * 125.65347 * 354.65240 * 10 8 7 24 24 C 1.36313 * 119.59918 * 0.25410 * 7 6 5 25 25 N 1.36530 * 120.64916 * 359.49024 * 24 7 6 26 26 C 1.35275 * 125.99995 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46955 * 90.02908 * 1 2 3 28 28 H 1.09002 * 109.46865 * 210.02412 * 1 2 3 29 29 H 1.08998 * 109.47191 * 330.02410 * 1 2 3 30 30 H 1.08002 * 126.43602 * 359.97400 * 3 2 1 31 31 H 1.08003 * 120.22122 * 359.97438 * 5 4 3 32 32 H 1.08000 * 120.51683 * 180.02562 * 6 5 4 33 33 H 1.09000 * 110.36717 * 322.69619 * 11 10 8 34 34 H 1.08999 * 110.37102 * 85.02143 * 11 10 8 35 35 H 1.09000 * 111.00829 * 81.06401 * 12 11 10 36 36 H 1.09005 * 111.00564 * 204.87903 * 12 11 10 37 37 H 0.96701 * 113.99894 * 179.97438 * 14 13 12 38 38 H 0.97006 * 120.00267 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.87951 * 298.62882 * 23 10 8 40 40 H 1.09000 * 109.88026 * 59.79298 * 23 10 8 41 41 H 1.08001 * 119.67061 * 179.74925 * 24 7 6 42 42 H 1.08003 * 125.52948 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1320 0.0000 4 6 3.6382 0.6846 0.0006 5 6 4.8698 1.3784 0.0013 6 6 6.0308 0.6794 0.0023 7 6 5.9773 -0.7842 0.0032 8 6 7.2242 -1.5721 0.0037 9 8 7.1806 -2.7791 -0.1371 10 7 8.4117 -0.9542 0.1604 11 6 9.7190 -1.6242 0.2848 12 6 10.6163 -0.6069 1.0328 13 6 10.1297 0.7383 0.4321 14 8 10.7733 0.9963 -0.8174 15 6 10.3696 1.8709 1.3969 16 1 10.8258 1.6756 2.3562 17 6 10.0066 3.1563 1.0550 18 7 9.4506 3.3940 -0.1128 19 14 10.3045 4.5603 2.2507 20 1 11.7571 4.6630 2.5414 21 1 9.8283 5.8319 1.6495 22 1 9.5643 4.3018 3.5119 23 6 8.6187 0.4998 0.2290 24 6 4.7683 -1.4138 -0.0023 25 7 3.6085 -0.6935 0.0019 26 6 2.3021 -1.0944 0.0005 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5134 30 1 2.0034 2.1616 -0.0004 31 1 4.8854 2.4583 0.0011 32 1 6.9805 1.1936 0.0033 33 1 9.6212 -2.5420 0.8647 34 1 10.1303 -1.8396 -0.7014 35 1 10.4361 -0.6430 2.1072 36 1 11.6696 -0.7769 0.8096 37 1 10.5034 1.8257 -1.2350 38 1 9.1955 4.2984 -0.3535 39 1 8.2915 0.9650 -0.7008 40 1 8.0617 0.9142 1.0693 41 1 4.7276 -2.4930 -0.0057 42 1 1.9600 -2.1188 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854273.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:53 Heat of formation + Delta-G solvation = 10.273578 kcal Electronic energy + Delta-G solvation = -26173.693337 eV Core-core repulsion = 22506.416159 eV Total energy + Delta-G solvation = -3667.277178 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04095 -39.71852 -37.47421 -36.13962 -34.40387 -33.16613 -32.30612 -31.56673 -30.24099 -28.34242 -27.86025 -26.83080 -25.37724 -23.62157 -22.65110 -21.67830 -20.45605 -19.71235 -18.81757 -17.70944 -17.30241 -16.70816 -15.96995 -15.54273 -15.42166 -15.01317 -14.85567 -14.46141 -14.20484 -13.97507 -13.53046 -13.24430 -13.10693 -13.00640 -12.96734 -12.94352 -12.27819 -11.96688 -11.74025 -11.66650 -11.57553 -11.32682 -11.06834 -10.82299 -10.70374 -10.60843 -10.47692 -10.29315 -10.25270 -9.75594 -9.40491 -8.79122 -8.40015 -8.32241 -8.06147 -7.25224 -6.44204 -4.52550 0.84103 1.35938 2.67690 2.74112 3.13854 3.20007 3.20189 3.22737 3.53866 3.85882 4.15691 4.60455 4.75148 4.83906 4.94071 4.96984 5.09391 5.27474 5.29624 5.44902 5.58378 5.60184 5.66292 5.70446 5.75564 5.84674 5.90468 5.92676 6.11202 6.14024 6.24110 6.34006 6.49230 6.51490 6.59207 6.66482 6.79334 6.94341 6.95946 7.02528 7.17681 7.34504 7.59677 7.82695 8.04311 8.46452 8.53999 9.17395 9.31303 10.63489 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.004262 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.550451 B = 6568.656328 C = 8140.271396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.117 4.117 3 C -0.211 4.211 4 C 0.057 3.943 5 C -0.102 4.102 6 C -0.129 4.129 7 C -0.153 4.153 8 C 0.579 3.421 9 O -0.563 6.563 10 N -0.600 5.600 11 C 0.111 3.889 12 C -0.119 4.119 13 C 0.248 3.752 14 O -0.583 6.583 15 C -0.537 4.537 16 H 0.068 0.932 17 C 0.072 3.928 18 N -0.900 5.900 19 Si 0.903 3.097 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.274 1.274 23 C 0.079 3.921 24 C 0.116 3.884 25 N -0.352 5.352 26 C -0.062 4.062 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.188 0.812 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.386 0.614 38 H 0.273 0.727 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.171 0.829 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.547 -3.838 0.189 12.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C -0.235 4.235 4 C -0.048 4.048 5 C -0.120 4.120 6 C -0.148 4.148 7 C -0.159 4.159 8 C 0.368 3.632 9 O -0.445 6.445 10 N -0.330 5.330 11 C -0.011 4.011 12 C -0.157 4.157 13 C 0.207 3.793 14 O -0.394 6.394 15 C -0.575 4.575 16 H 0.086 0.914 17 C -0.131 4.131 18 N -0.540 5.540 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.043 4.043 24 C -0.007 4.007 25 N -0.017 5.017 26 C -0.188 4.188 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.204 0.796 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.238 0.762 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.188 0.812 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.285 -5.119 0.130 12.393 hybrid contribution -0.229 1.414 0.439 1.498 sum -11.514 -3.705 0.569 12.109 Atomic orbital electron populations 1.20187 0.89655 1.02221 1.01771 1.19436 0.95641 0.92212 1.04834 1.20927 0.89596 0.98672 1.14272 1.19086 0.95788 0.81763 1.08152 1.20604 0.89033 1.00414 1.01981 1.23940 1.01985 0.91866 0.96969 1.20315 0.92379 0.94378 1.08848 1.17332 0.82326 0.86272 0.77274 1.90728 1.87137 1.14083 1.52582 1.48526 1.05647 1.09673 1.69203 1.22251 0.82445 0.95993 1.00438 1.22802 0.99061 0.94702 0.99174 1.19513 0.85081 0.91458 0.83249 1.86119 1.69746 1.46416 1.37069 1.21532 1.41475 0.91779 1.02698 0.91390 1.25042 0.93390 0.99051 0.95569 1.69538 1.41398 1.22415 1.20655 0.86452 0.78988 0.80625 0.80884 1.19935 1.20969 1.19962 1.23657 1.02249 0.77105 1.01261 1.21608 0.83177 0.97895 0.97994 1.41410 1.05293 1.07137 1.47846 1.21606 0.79825 0.99801 1.17556 0.91680 0.91998 0.91643 0.83895 0.83652 0.79606 0.91480 0.91539 0.90442 0.90233 0.76201 0.91681 0.90495 0.90236 0.81184 0.81646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.37 36.01 0.37 -0.34 16 2 C -0.12 -1.45 6.10 -105.05 -0.64 -2.09 16 3 C -0.21 -2.90 10.91 -38.92 -0.42 -3.33 16 4 C 0.06 0.89 6.71 -83.95 -0.56 0.33 16 5 C -0.10 -1.61 10.09 -39.37 -0.40 -2.01 16 6 C -0.13 -2.23 8.68 -37.25 -0.32 -2.56 16 7 C -0.15 -2.72 5.97 -103.51 -0.62 -3.34 16 8 C 0.58 11.42 7.80 -12.49 -0.10 11.32 16 9 O -0.56 -11.97 16.61 5.28 0.09 -11.89 16 10 N -0.60 -11.91 3.33 -172.38 -0.57 -12.48 16 11 C 0.11 2.08 6.88 -2.53 -0.02 2.06 16 12 C -0.12 -2.31 6.22 -24.58 -0.15 -2.46 16 13 C 0.25 5.52 0.86 -89.94 -0.08 5.44 16 14 O -0.58 -13.82 13.08 -35.23 -0.46 -14.28 16 15 C -0.54 -12.87 8.11 -34.44 -0.28 -13.15 16 16 H 0.07 1.62 7.76 -52.49 -0.41 1.22 16 17 C 0.07 1.71 5.28 -17.82 -0.09 1.61 16 18 N -0.90 -21.28 10.98 55.43 0.61 -20.67 16 19 Si 0.90 18.94 29.54 -169.99 -5.02 13.91 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 C 0.08 1.63 3.51 -3.07 -0.01 1.62 16 24 C 0.12 1.84 10.45 -16.15 -0.17 1.67 16 25 N -0.35 -5.37 2.93 -60.50 -0.18 -5.55 16 26 C -0.06 -0.80 11.49 -16.46 -0.19 -0.99 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 32 H 0.19 3.47 2.99 -53.30 -0.16 3.31 16 33 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.39 9.27 6.98 45.56 0.32 9.59 16 38 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 39 H 0.08 1.66 6.67 -51.93 -0.35 1.31 16 40 H 0.08 1.69 6.29 -51.93 -0.33 1.37 16 41 H 0.17 2.41 7.58 -52.49 -0.40 2.01 16 42 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -26.93 344.80 -8.70 -35.62 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -3.68 Total: -6.21 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.14 Total: -38.69 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.37 Total: -26.17 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.93 -8.70 -35.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854273.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.897 kcal (2) G-P(sol) polarization free energy of solvation -26.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds