Wall clock time and date at job start Tue Mar 31 2020 10:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39916 * 125.99782 * 2 1 4 4 C 1.38322 * 107.12590 * 179.97438 * 3 2 1 5 5 C 1.41355 * 131.73271 * 180.02562 * 4 3 2 6 6 C 1.35517 * 119.55326 * 179.97438 * 5 4 3 7 7 C 1.46456 * 118.96020 * 359.97438 * 6 5 4 8 8 C 1.47494 * 120.19884 * 179.97438 * 7 6 5 9 9 O 1.21595 * 119.99717 * 187.72525 * 8 7 6 10 10 N 1.34777 * 119.99586 * 7.72941 * 8 7 6 11 11 C 1.47427 * 125.64212 * 174.96925 * 10 8 7 12 12 C 1.54908 * 104.82907 * 203.86173 * 11 10 8 13 13 C 1.55159 * 101.58053 * 322.98668 * 12 11 10 14 14 O 1.42898 * 110.72173 * 277.13659 * 13 12 11 15 15 C 1.50703 * 110.71811 * 154.04357 * 13 12 11 16 16 H 1.07999 * 120.00050 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99837 * 180.02562 * 15 13 12 18 18 N 1.31506 * 120.00155 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99872 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47142 * 60.00024 * 19 17 15 21 21 H 1.48496 * 109.46953 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46854 * 300.00090 * 19 17 15 23 23 C 1.47022 * 125.65347 * 354.65240 * 10 8 7 24 24 C 1.36313 * 119.59918 * 0.25410 * 7 6 5 25 25 N 1.36530 * 120.64916 * 359.49024 * 24 7 6 26 26 C 1.35275 * 125.99995 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46955 * 90.02908 * 1 2 3 28 28 H 1.09002 * 109.46865 * 210.02412 * 1 2 3 29 29 H 1.08998 * 109.47191 * 330.02410 * 1 2 3 30 30 H 1.08002 * 126.43602 * 359.97400 * 3 2 1 31 31 H 1.08003 * 120.22122 * 359.97438 * 5 4 3 32 32 H 1.08000 * 120.51683 * 180.02562 * 6 5 4 33 33 H 1.09000 * 110.36717 * 322.69619 * 11 10 8 34 34 H 1.08999 * 110.37102 * 85.02143 * 11 10 8 35 35 H 1.09000 * 111.00829 * 81.06401 * 12 11 10 36 36 H 1.09005 * 111.00564 * 204.87903 * 12 11 10 37 37 H 0.96701 * 113.99894 * 179.97438 * 14 13 12 38 38 H 0.97006 * 120.00267 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.87951 * 298.62882 * 23 10 8 40 40 H 1.09000 * 109.88026 * 59.79298 * 23 10 8 41 41 H 1.08001 * 119.67061 * 179.74925 * 24 7 6 42 42 H 1.08003 * 125.52948 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1320 0.0000 4 6 3.6382 0.6846 0.0006 5 6 4.8698 1.3784 0.0013 6 6 6.0308 0.6794 0.0023 7 6 5.9773 -0.7842 0.0032 8 6 7.2242 -1.5721 0.0037 9 8 7.1806 -2.7791 -0.1371 10 7 8.4117 -0.9542 0.1604 11 6 9.7190 -1.6242 0.2848 12 6 10.6163 -0.6069 1.0328 13 6 10.1297 0.7383 0.4321 14 8 10.7733 0.9963 -0.8174 15 6 10.3696 1.8709 1.3969 16 1 10.8258 1.6756 2.3562 17 6 10.0066 3.1563 1.0550 18 7 9.4506 3.3940 -0.1128 19 14 10.3045 4.5603 2.2507 20 1 11.7571 4.6630 2.5414 21 1 9.8283 5.8319 1.6495 22 1 9.5643 4.3018 3.5119 23 6 8.6187 0.4998 0.2290 24 6 4.7683 -1.4138 -0.0023 25 7 3.6085 -0.6935 0.0019 26 6 2.3021 -1.0944 0.0005 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5134 30 1 2.0034 2.1616 -0.0004 31 1 4.8854 2.4583 0.0011 32 1 6.9805 1.1936 0.0033 33 1 9.6212 -2.5420 0.8647 34 1 10.1303 -1.8396 -0.7014 35 1 10.4361 -0.6430 2.1072 36 1 11.6696 -0.7769 0.8096 37 1 10.5034 1.8257 -1.2350 38 1 9.1955 4.2984 -0.3535 39 1 8.2915 0.9650 -0.7008 40 1 8.0617 0.9142 1.0693 41 1 4.7276 -2.4930 -0.0057 42 1 1.9600 -2.1188 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592854273.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:53 Heat of formation + Delta-G solvation = -4.193023 kcal Electronic energy + Delta-G solvation = -26174.320656 eV Core-core repulsion = 22506.416159 eV Total energy + Delta-G solvation = -3667.904497 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.16202 -41.25370 -39.10504 -37.34722 -36.11151 -34.35524 -34.12359 -32.76124 -31.67884 -29.93744 -29.03643 -27.90645 -27.09504 -24.98887 -23.95627 -22.93698 -21.80324 -21.28738 -20.10620 -19.21361 -18.81260 -17.99069 -17.57742 -17.05137 -16.82201 -16.46313 -16.30863 -15.92162 -15.42627 -15.29321 -14.89108 -14.82160 -14.67247 -14.42904 -13.87885 -13.82375 -13.61375 -13.45603 -13.35713 -13.08137 -12.78984 -12.68000 -12.45721 -12.32224 -12.31247 -12.18342 -11.98309 -11.88077 -11.43270 -11.31424 -11.11253 -10.59896 -10.18225 -9.72669 -9.32582 -8.40562 -8.24763 -6.39180 -0.40634 0.15078 1.46061 1.48987 1.50314 1.55047 1.57444 1.96724 2.09525 2.41116 2.54996 3.01002 3.37439 3.46766 3.77254 3.81170 3.89713 3.96888 4.02840 4.12124 4.29793 4.30412 4.39092 4.53907 4.56996 4.64854 4.77016 4.78925 4.88665 4.96714 5.01709 5.04566 5.08162 5.23556 5.25262 5.27076 5.34522 5.45870 5.47619 5.76819 5.89837 5.92842 6.04145 6.25723 6.45845 6.65436 6.95843 7.32368 7.43325 8.81459 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.004262 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.550451 B = 6568.656328 C = 8140.271396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.120 4.120 3 C -0.204 4.204 4 C 0.021 3.979 5 C -0.094 4.094 6 C -0.151 4.151 7 C -0.179 4.179 8 C 0.579 3.421 9 O -0.583 6.583 10 N -0.605 5.605 11 C 0.112 3.888 12 C -0.113 4.113 13 C 0.231 3.769 14 O -0.592 6.592 15 C -0.558 4.558 16 H 0.064 0.936 17 C 0.039 3.961 18 N -0.910 5.910 19 Si 0.956 3.044 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.273 1.273 23 C 0.103 3.897 24 C 0.133 3.867 25 N -0.363 5.363 26 C -0.059 4.059 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.168 0.832 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.381 0.619 38 H 0.275 0.725 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.186 0.814 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.874 -4.055 0.687 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C -0.228 4.228 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.170 4.170 7 C -0.185 4.185 8 C 0.369 3.631 9 O -0.466 6.466 10 N -0.336 5.336 11 C -0.010 4.010 12 C -0.151 4.151 13 C 0.191 3.809 14 O -0.401 6.401 15 C -0.596 4.596 16 H 0.082 0.918 17 C -0.163 4.163 18 N -0.549 5.549 19 Si 0.782 3.218 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.198 1.198 23 C -0.019 4.019 24 C 0.010 3.990 25 N -0.029 5.029 26 C -0.185 4.185 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.179 0.821 31 H 0.176 0.824 32 H 0.185 0.815 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.232 0.768 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.203 0.797 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -13.617 -5.330 0.628 14.636 hybrid contribution 0.307 1.483 0.262 1.537 sum -13.310 -3.847 0.890 13.884 Atomic orbital electron populations 1.20284 0.86855 1.03560 1.02912 1.19949 0.97518 0.91358 1.03537 1.21367 0.89084 1.00164 1.12220 1.19316 0.96311 0.82282 1.10373 1.20752 0.88933 1.01061 1.00544 1.23638 1.01764 0.91933 0.99692 1.20140 0.92234 0.94380 1.11767 1.17628 0.82784 0.86193 0.76485 1.90697 1.87477 1.14791 1.53673 1.48574 1.06249 1.09297 1.69460 1.22281 0.81925 0.96290 1.00491 1.22777 0.99613 0.93192 0.99488 1.19752 0.86108 0.92491 0.82583 1.86109 1.70181 1.46085 1.37750 1.21739 1.42103 0.92795 1.02979 0.91813 1.25601 0.93201 1.00662 0.96789 1.69605 1.41264 1.22730 1.21339 0.85636 0.78459 0.78432 0.79273 1.20220 1.20667 1.19844 1.23258 1.00928 0.77585 1.00136 1.21741 0.82977 0.98458 0.95862 1.41611 1.05792 1.07070 1.48412 1.22341 0.78830 1.01647 1.15657 0.90516 0.90343 0.90727 0.82125 0.82410 0.81495 0.89975 0.91769 0.89678 0.89453 0.76801 0.91580 0.91868 0.91188 0.79663 0.78601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.37 71.24 0.74 -0.34 16 2 C -0.12 -2.58 6.10 -20.14 -0.12 -2.70 16 3 C -0.20 -5.13 10.91 22.70 0.25 -4.89 16 4 C 0.02 0.63 6.71 38.99 0.26 0.89 16 5 C -0.09 -3.00 10.09 22.41 0.23 -2.78 16 6 C -0.15 -5.43 8.68 23.78 0.21 -5.23 16 7 C -0.18 -6.46 5.97 -19.14 -0.11 -6.58 16 8 C 0.58 23.17 7.80 86.68 0.68 23.84 16 9 O -0.58 -24.80 16.61 -4.02 -0.07 -24.86 16 10 N -0.61 -24.52 3.33 -817.56 -2.72 -27.24 16 11 C 0.11 4.20 6.88 86.85 0.60 4.80 16 12 C -0.11 -4.38 6.22 31.99 0.20 -4.18 16 13 C 0.23 10.50 0.86 -10.35 -0.01 10.49 16 14 O -0.59 -28.68 13.08 -148.98 -1.95 -30.63 16 15 C -0.56 -27.14 8.11 25.60 0.21 -26.94 16 16 H 0.06 3.08 7.76 -2.91 -0.02 3.05 16 17 C 0.04 1.86 5.28 84.66 0.45 2.31 16 18 N -0.91 -43.67 10.98 21.45 0.24 -43.44 16 19 Si 0.96 38.86 29.54 68.60 2.03 40.88 16 20 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 C 0.10 4.42 3.51 86.73 0.30 4.72 16 24 C 0.13 4.12 10.45 83.51 0.87 4.99 16 25 N -0.36 -10.50 2.93 -345.31 -1.01 -11.51 16 26 C -0.06 -1.36 11.49 83.26 0.96 -0.40 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 32 H 0.17 6.59 2.99 -3.67 -0.01 6.58 16 33 H 0.08 2.82 8.09 -2.39 -0.02 2.80 16 34 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.08 3.14 8.03 -2.39 -0.02 3.12 16 36 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 37 H 0.38 18.88 6.98 -74.06 -0.52 18.37 16 38 H 0.27 12.63 8.31 -92.70 -0.77 11.86 16 39 H 0.06 2.87 6.67 -2.39 -0.02 2.85 16 40 H 0.07 3.12 6.29 -2.39 -0.02 3.10 16 41 H 0.19 5.02 7.58 -2.91 -0.02 5.00 16 42 H 0.20 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -57.26 344.80 2.75 -54.51 By element: Atomic # 1 Polarization: 43.73 SS G_CDS: 0.54 Total: 44.27 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 5.69 Total: -1.98 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -3.50 Total: -82.19 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -2.02 Total: -55.49 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.88 kcal Total: -57.26 2.75 -54.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854273.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.314 kcal (2) G-P(sol) polarization free energy of solvation -57.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds