Wall clock time and date at job start Tue Mar 31 2020 10:23:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.39916 * 125.99782 * 2 1
4 4 C 1.38322 * 107.12590 * 179.97438 * 3 2 1
5 5 C 1.41355 * 131.73271 * 180.02562 * 4 3 2
6 6 C 1.35517 * 119.55326 * 179.97438 * 5 4 3
7 7 C 1.46456 * 118.96020 * 359.97438 * 6 5 4
8 8 C 1.47494 * 120.19884 * 179.97438 * 7 6 5
9 9 O 1.21595 * 119.99717 * 187.72525 * 8 7 6
10 10 N 1.34777 * 119.99586 * 7.72941 * 8 7 6
11 11 C 1.47427 * 125.64212 * 174.96925 * 10 8 7
12 12 C 1.54908 * 104.82907 * 203.86173 * 11 10 8
13 13 C 1.55159 * 101.58053 * 322.98668 * 12 11 10
14 14 O 1.42898 * 110.72173 * 277.13659 * 13 12 11
15 15 C 1.50703 * 110.71811 * 154.04357 * 13 12 11
16 16 H 1.07999 * 120.00050 * 0.02562 * 15 13 12
17 17 C 1.37875 * 119.99837 * 180.02562 * 15 13 12
18 18 N 1.31506 * 120.00155 * 0.02562 * 17 15 13
19 19 Si 1.86806 * 119.99872 * 180.02562 * 17 15 13
20 20 H 1.48495 * 109.47142 * 60.00024 * 19 17 15
21 21 H 1.48496 * 109.46953 * 180.02562 * 19 17 15
22 22 H 1.48502 * 109.46854 * 300.00090 * 19 17 15
23 23 C 1.47022 * 125.65347 * 354.65240 * 10 8 7
24 24 C 1.36313 * 119.59918 * 0.25410 * 7 6 5
25 25 N 1.36530 * 120.64916 * 359.49024 * 24 7 6
26 26 C 1.35275 * 125.99995 * 179.97438 * 2 1 3
27 27 H 1.09001 * 109.46955 * 90.02908 * 1 2 3
28 28 H 1.09002 * 109.46865 * 210.02412 * 1 2 3
29 29 H 1.08998 * 109.47191 * 330.02410 * 1 2 3
30 30 H 1.08002 * 126.43602 * 359.97400 * 3 2 1
31 31 H 1.08003 * 120.22122 * 359.97438 * 5 4 3
32 32 H 1.08000 * 120.51683 * 180.02562 * 6 5 4
33 33 H 1.09000 * 110.36717 * 322.69619 * 11 10 8
34 34 H 1.08999 * 110.37102 * 85.02143 * 11 10 8
35 35 H 1.09000 * 111.00829 * 81.06401 * 12 11 10
36 36 H 1.09005 * 111.00564 * 204.87903 * 12 11 10
37 37 H 0.96701 * 113.99894 * 179.97438 * 14 13 12
38 38 H 0.97006 * 120.00267 * 180.02562 * 18 17 15
39 39 H 1.08998 * 109.87951 * 298.62882 * 23 10 8
40 40 H 1.09000 * 109.88026 * 59.79298 * 23 10 8
41 41 H 1.08001 * 119.67061 * 179.74925 * 24 7 6
42 42 H 1.08003 * 125.52948 * 0.02562 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3294 1.1320 0.0000
4 6 3.6382 0.6846 0.0006
5 6 4.8698 1.3784 0.0013
6 6 6.0308 0.6794 0.0023
7 6 5.9773 -0.7842 0.0032
8 6 7.2242 -1.5721 0.0037
9 8 7.1806 -2.7791 -0.1371
10 7 8.4117 -0.9542 0.1604
11 6 9.7190 -1.6242 0.2848
12 6 10.6163 -0.6069 1.0328
13 6 10.1297 0.7383 0.4321
14 8 10.7733 0.9963 -0.8174
15 6 10.3696 1.8709 1.3969
16 1 10.8258 1.6756 2.3562
17 6 10.0066 3.1563 1.0550
18 7 9.4506 3.3940 -0.1128
19 14 10.3045 4.5603 2.2507
20 1 11.7571 4.6630 2.5414
21 1 9.8283 5.8319 1.6495
22 1 9.5643 4.3018 3.5119
23 6 8.6187 0.4998 0.2290
24 6 4.7683 -1.4138 -0.0023
25 7 3.6085 -0.6935 0.0019
26 6 2.3021 -1.0944 0.0005
27 1 -0.3633 -0.0005 -1.0277
28 1 -0.3633 -0.8898 0.5142
29 1 -0.3633 0.8902 0.5134
30 1 2.0034 2.1616 -0.0004
31 1 4.8854 2.4583 0.0011
32 1 6.9805 1.1936 0.0033
33 1 9.6212 -2.5420 0.8647
34 1 10.1303 -1.8396 -0.7014
35 1 10.4361 -0.6430 2.1072
36 1 11.6696 -0.7769 0.8096
37 1 10.5034 1.8257 -1.2350
38 1 9.1955 4.2984 -0.3535
39 1 8.2915 0.9650 -0.7008
40 1 8.0617 0.9142 1.0693
41 1 4.7276 -2.4930 -0.0057
42 1 1.9600 -2.1188 0.0006
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592854273.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:23:53
Heat of formation + Delta-G solvation = -4.193023 kcal
Electronic energy + Delta-G solvation = -26174.320656 eV
Core-core repulsion = 22506.416159 eV
Total energy + Delta-G solvation = -3667.904497 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-43.16202 -41.25370 -39.10504 -37.34722 -36.11151 -34.35524 -34.12359 -32.76124
-31.67884 -29.93744 -29.03643 -27.90645 -27.09504 -24.98887 -23.95627 -22.93698
-21.80324 -21.28738 -20.10620 -19.21361 -18.81260 -17.99069 -17.57742 -17.05137
-16.82201 -16.46313 -16.30863 -15.92162 -15.42627 -15.29321 -14.89108 -14.82160
-14.67247 -14.42904 -13.87885 -13.82375 -13.61375 -13.45603 -13.35713 -13.08137
-12.78984 -12.68000 -12.45721 -12.32224 -12.31247 -12.18342 -11.98309 -11.88077
-11.43270 -11.31424 -11.11253 -10.59896 -10.18225 -9.72669 -9.32582 -8.40562
-8.24763 -6.39180 -0.40634 0.15078 1.46061 1.48987 1.50314 1.55047
1.57444 1.96724 2.09525 2.41116 2.54996 3.01002 3.37439 3.46766
3.77254 3.81170 3.89713 3.96888 4.02840 4.12124 4.29793 4.30412
4.39092 4.53907 4.56996 4.64854 4.77016 4.78925 4.88665 4.96714
5.01709 5.04566 5.08162 5.23556 5.25262 5.27076 5.34522 5.45870
5.47619 5.76819 5.89837 5.92842 6.04145 6.25723 6.45845 6.65436
6.95843 7.32368 7.43325 8.81459
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.014351 B = 0.004262 C = 0.003439
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1950.550451 B = 6568.656328 C = 8140.271396
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C -0.120 4.120
3 C -0.204 4.204
4 C 0.021 3.979
5 C -0.094 4.094
6 C -0.151 4.151
7 C -0.179 4.179
8 C 0.579 3.421
9 O -0.583 6.583
10 N -0.605 5.605
11 C 0.112 3.888
12 C -0.113 4.113
13 C 0.231 3.769
14 O -0.592 6.592
15 C -0.558 4.558
16 H 0.064 0.936
17 C 0.039 3.961
18 N -0.910 5.910
19 Si 0.956 3.044
20 H -0.277 1.277
21 H -0.281 1.281
22 H -0.273 1.273
23 C 0.103 3.897
24 C 0.133 3.867
25 N -0.363 5.363
26 C -0.059 4.059
27 H 0.076 0.924
28 H 0.078 0.922
29 H 0.074 0.926
30 H 0.161 0.839
31 H 0.158 0.842
32 H 0.168 0.832
33 H 0.082 0.918
34 H 0.064 0.936
35 H 0.085 0.915
36 H 0.087 0.913
37 H 0.381 0.619
38 H 0.275 0.725
39 H 0.063 0.937
40 H 0.070 0.930
41 H 0.186 0.814
42 H 0.197 0.803
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.874 -4.055 0.687 14.471
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.124 4.124
3 C -0.228 4.228
4 C -0.083 4.083
5 C -0.113 4.113
6 C -0.170 4.170
7 C -0.185 4.185
8 C 0.369 3.631
9 O -0.466 6.466
10 N -0.336 5.336
11 C -0.010 4.010
12 C -0.151 4.151
13 C 0.191 3.809
14 O -0.401 6.401
15 C -0.596 4.596
16 H 0.082 0.918
17 C -0.163 4.163
18 N -0.549 5.549
19 Si 0.782 3.218
20 H -0.202 1.202
21 H -0.207 1.207
22 H -0.198 1.198
23 C -0.019 4.019
24 C 0.010 3.990
25 N -0.029 5.029
26 C -0.185 4.185
27 H 0.095 0.905
28 H 0.097 0.903
29 H 0.093 0.907
30 H 0.179 0.821
31 H 0.176 0.824
32 H 0.185 0.815
33 H 0.100 0.900
34 H 0.082 0.918
35 H 0.103 0.897
36 H 0.105 0.895
37 H 0.232 0.768
38 H 0.084 0.916
39 H 0.081 0.919
40 H 0.088 0.912
41 H 0.203 0.797
42 H 0.214 0.786
Dipole moment (debyes) X Y Z Total
from point charges -13.617 -5.330 0.628 14.636
hybrid contribution 0.307 1.483 0.262 1.537
sum -13.310 -3.847 0.890 13.884
Atomic orbital electron populations
1.20284 0.86855 1.03560 1.02912 1.19949 0.97518 0.91358 1.03537
1.21367 0.89084 1.00164 1.12220 1.19316 0.96311 0.82282 1.10373
1.20752 0.88933 1.01061 1.00544 1.23638 1.01764 0.91933 0.99692
1.20140 0.92234 0.94380 1.11767 1.17628 0.82784 0.86193 0.76485
1.90697 1.87477 1.14791 1.53673 1.48574 1.06249 1.09297 1.69460
1.22281 0.81925 0.96290 1.00491 1.22777 0.99613 0.93192 0.99488
1.19752 0.86108 0.92491 0.82583 1.86109 1.70181 1.46085 1.37750
1.21739 1.42103 0.92795 1.02979 0.91813 1.25601 0.93201 1.00662
0.96789 1.69605 1.41264 1.22730 1.21339 0.85636 0.78459 0.78432
0.79273 1.20220 1.20667 1.19844 1.23258 1.00928 0.77585 1.00136
1.21741 0.82977 0.98458 0.95862 1.41611 1.05792 1.07070 1.48412
1.22341 0.78830 1.01647 1.15657 0.90516 0.90343 0.90727 0.82125
0.82410 0.81495 0.89975 0.91769 0.89678 0.89453 0.76801 0.91580
0.91868 0.91188 0.79663 0.78601
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.07 10.37 71.24 0.74 -0.34 16
2 C -0.12 -2.58 6.10 -20.14 -0.12 -2.70 16
3 C -0.20 -5.13 10.91 22.70 0.25 -4.89 16
4 C 0.02 0.63 6.71 38.99 0.26 0.89 16
5 C -0.09 -3.00 10.09 22.41 0.23 -2.78 16
6 C -0.15 -5.43 8.68 23.78 0.21 -5.23 16
7 C -0.18 -6.46 5.97 -19.14 -0.11 -6.58 16
8 C 0.58 23.17 7.80 86.68 0.68 23.84 16
9 O -0.58 -24.80 16.61 -4.02 -0.07 -24.86 16
10 N -0.61 -24.52 3.33 -817.56 -2.72 -27.24 16
11 C 0.11 4.20 6.88 86.85 0.60 4.80 16
12 C -0.11 -4.38 6.22 31.99 0.20 -4.18 16
13 C 0.23 10.50 0.86 -10.35 -0.01 10.49 16
14 O -0.59 -28.68 13.08 -148.98 -1.95 -30.63 16
15 C -0.56 -27.14 8.11 25.60 0.21 -26.94 16
16 H 0.06 3.08 7.76 -2.91 -0.02 3.05 16
17 C 0.04 1.86 5.28 84.66 0.45 2.31 16
18 N -0.91 -43.67 10.98 21.45 0.24 -43.44 16
19 Si 0.96 38.86 29.54 68.60 2.03 40.88 16
20 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16
21 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16
22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16
23 C 0.10 4.42 3.51 86.73 0.30 4.72 16
24 C 0.13 4.12 10.45 83.51 0.87 4.99 16
25 N -0.36 -10.50 2.93 -345.31 -1.01 -11.51 16
26 C -0.06 -1.36 11.49 83.26 0.96 -0.40 16
27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16
29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
30 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16
31 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16
32 H 0.17 6.59 2.99 -3.67 -0.01 6.58 16
33 H 0.08 2.82 8.09 -2.39 -0.02 2.80 16
34 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16
35 H 0.08 3.14 8.03 -2.39 -0.02 3.12 16
36 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16
37 H 0.38 18.88 6.98 -74.06 -0.52 18.37 16
38 H 0.27 12.63 8.31 -92.70 -0.77 11.86 16
39 H 0.06 2.87 6.67 -2.39 -0.02 2.85 16
40 H 0.07 3.12 6.29 -2.39 -0.02 3.10 16
41 H 0.19 5.02 7.58 -2.91 -0.02 5.00 16
42 H 0.20 3.10 8.06 -2.91 -0.02 3.07 16
Total: -1.00 -57.26 344.80 2.75 -54.51
By element:
Atomic # 1 Polarization: 43.73 SS G_CDS: 0.54 Total: 44.27 kcal
Atomic # 6 Polarization: -7.67 SS G_CDS: 5.69 Total: -1.98 kcal
Atomic # 7 Polarization: -78.69 SS G_CDS: -3.50 Total: -82.19 kcal
Atomic # 8 Polarization: -53.48 SS G_CDS: -2.02 Total: -55.49 kcal
Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.88 kcal
Total: -57.26 2.75 -54.51 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592854273.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.314 kcal
(2) G-P(sol) polarization free energy of solvation -57.256 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.942 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.507 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.193 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds