Wall clock time and date at job start Tue Mar 31 2020 10:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 110.91010 * 2 1 4 4 C 1.34771 * 119.99965 * 56.03123 * 3 2 1 5 5 O 1.21357 * 120.00118 * 0.02562 * 4 3 2 6 6 C 1.49354 * 120.00049 * 179.97438 * 4 3 2 7 7 O 1.21376 * 120.00084 * 0.28125 * 6 4 3 8 8 N 1.34783 * 120.00460 * 180.02562 * 6 4 3 9 9 C 1.39732 * 120.00293 * 174.93875 * 8 6 4 10 10 C 1.39351 * 119.95183 * 146.32745 * 9 8 6 11 11 C 1.38467 * 120.42176 * 179.97438 * 10 9 8 12 12 C 1.37693 * 120.32947 * 359.97438 * 11 10 9 13 13 C 1.40737 * 119.89806 * 0.02562 * 12 11 10 14 14 C 1.41416 * 120.21007 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00281 * 151.67662 * 14 13 12 16 16 C 1.39932 * 119.99690 * 331.67537 * 14 13 12 17 17 N 1.30835 * 120.00232 * 348.98910 * 16 14 13 18 18 Si 1.86798 * 120.00046 * 168.99621 * 16 14 13 19 19 H 1.48499 * 109.47301 * 59.99768 * 18 16 14 20 20 H 1.48494 * 109.47298 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47098 * 299.99801 * 18 16 14 22 22 C 1.38305 * 119.95610 * 326.06359 * 9 8 6 23 23 C 1.54634 * 111.07226 * 123.98671 * 2 1 3 24 24 C 1.51104 * 104.72192 * 93.42086 * 23 2 1 25 25 C 1.30528 * 111.10742 * 16.43393 * 24 23 2 26 26 C 1.51109 * 111.10451 * 0.02562 * 25 24 23 27 27 H 1.09001 * 109.47407 * 60.70218 * 1 2 3 28 28 H 1.09000 * 109.46902 * 180.70225 * 1 2 3 29 29 H 1.09002 * 109.47631 * 300.69726 * 1 2 3 30 30 H 0.97002 * 120.00025 * 236.03801 * 3 2 1 31 31 H 0.97006 * 119.99291 * 354.93695 * 8 6 4 32 32 H 1.07998 * 119.78656 * 0.02616 * 10 9 8 33 33 H 1.08008 * 119.83319 * 180.02562 * 11 10 9 34 34 H 1.08004 * 120.05048 * 179.97438 * 12 11 10 35 35 H 0.96994 * 120.00096 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.15950 * 359.96808 * 22 9 8 37 37 H 1.09004 * 110.38551 * 212.22729 * 23 2 1 38 38 H 1.08992 * 110.38754 * 334.60452 * 23 2 1 39 39 H 1.07995 * 124.44893 * 196.45946 * 24 23 2 40 40 H 1.07991 * 124.45172 * 180.02562 * 25 24 23 41 41 H 1.09000 * 110.38977 * 224.75630 * 26 25 24 42 42 H 1.09000 * 110.48296 * 102.41760 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0528 1.3686 0.0000 4 6 1.6842 2.2308 0.9680 5 8 0.9194 1.8734 1.8399 6 6 2.2176 3.6258 0.9683 7 8 2.9792 3.9845 0.0940 8 7 1.8494 4.4880 1.9366 9 6 2.4285 5.7582 1.9985 10 6 1.6765 6.8450 2.4402 11 6 2.2407 8.1077 2.5059 12 6 3.5524 8.3033 2.1356 13 6 4.3245 7.2153 1.6874 14 6 5.6725 7.4086 1.3059 15 1 6.3824 6.6005 1.4030 16 6 6.0864 8.6469 0.8026 17 7 5.1985 9.5528 0.4821 18 14 7.9069 9.0066 0.5881 19 1 8.4988 8.0212 -0.3520 20 1 8.0798 10.3771 0.0432 21 1 8.5893 8.9076 1.9033 22 6 3.7489 5.9340 1.6264 23 6 2.0859 -0.8066 1.1964 24 6 2.3054 -2.1990 0.6520 25 6 2.3049 -2.1989 -0.6532 26 6 2.0857 -0.8062 -1.1971 27 1 -0.3634 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3634 0.5246 0.8837 30 1 2.6643 1.6542 -0.6968 31 1 1.1822 4.2267 2.5905 32 1 0.6472 6.7012 2.7340 33 1 1.6492 8.9433 2.8501 34 1 3.9879 9.2903 2.1882 35 1 5.4855 10.4112 0.1336 36 1 4.3342 5.0916 1.2884 37 1 3.0290 -0.3791 1.5371 38 1 1.3612 -0.8269 2.0103 39 1 2.4440 -3.0789 1.2627 40 1 2.4430 -3.0785 -1.2643 41 1 1.3603 -0.8259 -2.0104 42 1 3.0277 -0.3778 -1.5396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594316697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:58 Heat of formation + Delta-G solvation = -44.082862 kcal Electronic energy + Delta-G solvation = -25225.045038 eV Core-core repulsion = 21555.410788 eV Total energy + Delta-G solvation = -3669.634250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.17020 -40.85134 -39.34014 -38.76152 -36.46202 -35.21283 -34.66549 -31.78889 -31.29555 -30.21590 -29.29470 -27.31578 -27.03357 -25.83352 -23.17896 -22.71584 -21.42251 -20.83427 -20.14361 -19.52882 -19.04327 -17.79833 -17.45417 -17.24380 -16.90725 -16.64878 -16.46049 -16.18142 -15.47637 -15.35511 -14.82189 -14.70065 -14.64851 -14.16851 -13.95057 -13.63936 -13.41647 -13.20815 -13.09860 -13.01737 -12.85472 -12.76403 -12.65574 -12.52526 -12.24442 -12.13813 -11.99214 -11.78225 -11.64459 -11.21708 -10.90657 -10.53380 -10.40043 -9.84222 -9.40277 -8.82335 -8.59422 -6.39885 0.12476 0.94467 1.03022 1.27524 1.34755 1.37920 1.49745 1.51959 2.10332 2.21996 2.57343 2.74418 3.28301 3.45448 3.66883 3.69834 3.88122 4.30182 4.31916 4.42627 4.57108 4.58616 4.64772 4.76663 4.77438 4.89861 4.89944 4.98516 5.04792 5.06137 5.07272 5.10135 5.25293 5.29901 5.33935 5.57441 5.60925 5.76568 5.94402 6.00492 6.03963 6.08798 6.28055 6.37690 6.63938 6.73838 6.88741 6.95247 7.00893 8.36456 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.002932 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.826591 B = 9547.559489 C =10597.020364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 N -0.681 5.681 4 C 0.525 3.475 5 O -0.524 6.524 6 C 0.492 3.508 7 O -0.529 6.529 8 N -0.628 5.628 9 C 0.148 3.852 10 C -0.243 4.243 11 C -0.091 4.091 12 C -0.188 4.188 13 C 0.089 3.911 14 C -0.500 4.500 15 H 0.069 0.931 16 C 0.033 3.967 17 N -0.830 5.830 18 Si 0.985 3.015 19 H -0.264 1.264 20 H -0.264 1.264 21 H -0.258 1.258 22 C -0.229 4.229 23 C -0.108 4.108 24 C -0.168 4.168 25 C -0.156 4.156 26 C -0.101 4.101 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.417 0.583 31 H 0.425 0.575 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.288 0.712 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.142 0.858 40 H 0.152 0.848 41 H 0.098 0.902 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 -18.883 -2.019 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.074 3.926 3 N -0.334 5.334 4 C 0.305 3.695 5 O -0.401 6.401 6 C 0.274 3.726 7 O -0.405 6.405 8 N -0.275 5.275 9 C 0.055 3.945 10 C -0.264 4.264 11 C -0.110 4.110 12 C -0.208 4.208 13 C 0.086 3.914 14 C -0.529 4.529 15 H 0.087 0.913 16 C -0.181 4.181 17 N -0.457 5.457 18 Si 0.806 3.194 19 H -0.188 1.188 20 H -0.188 1.188 21 H -0.183 1.183 22 C -0.250 4.250 23 C -0.146 4.146 24 C -0.186 4.186 25 C -0.174 4.174 26 C -0.138 4.138 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.255 0.745 31 H 0.264 0.736 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.160 0.840 40 H 0.170 0.830 41 H 0.116 0.884 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.981 -18.703 -2.133 20.078 hybrid contribution 0.850 0.525 -0.103 1.005 sum -6.131 -18.178 -2.236 19.314 Atomic orbital electron populations 1.22080 0.92295 1.03655 1.02997 1.21499 0.94986 0.78939 0.97162 1.45876 1.47689 1.11741 1.28055 1.19616 0.81708 0.85254 0.82931 1.90699 1.34703 1.77967 1.36714 1.20669 0.82400 0.87307 0.82190 1.90823 1.35143 1.78123 1.36381 1.43043 1.41812 1.12359 1.30267 1.17516 0.91787 0.83796 1.01358 1.20508 0.99825 0.91478 1.14600 1.20859 0.94862 0.96320 0.98965 1.21426 0.95159 0.99466 1.04775 1.17823 0.93885 0.91148 0.88507 1.19749 0.95188 0.98418 1.39592 0.91287 1.26730 1.04605 0.94647 0.92078 1.69839 1.37522 1.06518 1.31772 0.85209 0.76232 0.78304 0.79670 1.18847 1.18838 1.18253 1.20951 0.93894 0.97819 1.12359 1.21737 1.00755 0.94111 0.97994 1.23306 1.01562 0.96960 0.96806 1.23328 1.00549 0.97507 0.96058 1.21679 1.02282 0.93260 0.96618 0.91784 0.89628 0.91861 0.74476 0.73607 0.85103 0.85617 0.87336 0.90128 0.89092 0.91725 0.90911 0.84028 0.83043 0.88401 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.36 71.98 0.60 -2.20 16 2 C 0.16 3.00 0.93 4.72 0.00 3.01 16 3 N -0.68 -16.05 5.14 -419.28 -2.15 -18.20 16 4 C 0.53 15.49 7.42 87.24 0.65 16.14 16 5 O -0.52 -15.99 13.96 -3.27 -0.05 -16.04 16 6 C 0.49 18.08 7.61 87.24 0.66 18.74 16 7 O -0.53 -23.05 14.20 -3.33 -0.05 -23.09 16 8 N -0.63 -23.22 5.32 -304.97 -1.62 -24.84 16 9 C 0.15 6.69 6.26 38.17 0.24 6.93 16 10 C -0.24 -10.28 9.97 22.59 0.23 -10.05 16 11 C -0.09 -4.14 10.01 22.20 0.22 -3.91 16 12 C -0.19 -10.02 8.66 22.75 0.20 -9.82 16 13 C 0.09 5.04 5.55 -21.31 -0.12 4.92 16 14 C -0.50 -28.32 9.06 23.46 0.21 -28.10 16 15 H 0.07 3.83 7.87 -2.91 -0.02 3.81 16 16 C 0.03 1.73 5.25 85.25 0.45 2.18 16 17 N -0.83 -44.47 10.82 21.82 0.24 -44.23 16 18 Si 0.99 39.54 29.57 68.60 2.03 41.57 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 20 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 C -0.23 -12.09 8.39 22.86 0.19 -11.90 16 23 C -0.11 -2.10 5.37 30.53 0.16 -1.94 16 24 C -0.17 -2.41 10.77 26.26 0.28 -2.13 16 25 C -0.16 -1.89 10.78 26.26 0.28 -1.61 16 26 C -0.10 -1.38 6.04 30.54 0.18 -1.19 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.46 6.00 -2.39 -0.01 1.45 16 30 H 0.42 9.34 7.81 -92.71 -0.72 8.61 16 31 H 0.43 13.03 8.30 -92.70 -0.77 12.26 16 32 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 34 H 0.11 5.98 6.18 -2.91 -0.02 5.97 16 35 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 36 H 0.09 4.97 6.45 -2.91 -0.02 4.95 16 37 H 0.06 1.45 8.08 -2.39 -0.02 1.43 16 38 H 0.07 1.54 7.91 -2.39 -0.02 1.53 16 39 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.15 1.16 8.06 -2.92 -0.02 1.13 16 41 H 0.10 1.06 7.91 -2.39 -0.02 1.04 16 42 H 0.09 1.18 7.82 -2.39 -0.02 1.16 16 Total: -1.00 -66.76 351.90 2.42 -64.34 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -0.42 Total: 41.44 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 4.45 Total: -20.93 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -3.54 Total: -87.28 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -0.09 Total: -39.13 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -66.76 2.42 -64.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594316697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.253 kcal (2) G-P(sol) polarization free energy of solvation -66.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds