Wall clock time and date at job start Tue Mar 31 2020 11:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41384 * 126.58115 * 2 1 4 4 C 1.34516 * 106.83983 * 179.97438 * 3 2 1 5 5 O 1.34310 * 108.42133 * 359.74035 * 4 3 2 6 6 C 1.34298 * 109.47411 * 0.43054 * 5 4 3 7 7 C 1.50703 * 125.79085 * 179.82329 * 6 5 4 8 8 C 1.50696 * 109.47568 * 269.69953 * 7 6 5 9 9 O 1.21289 * 119.99762 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00038 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00377 * 0.02562 * 10 8 7 12 12 C 1.50704 * 109.47158 * 270.00187 * 11 10 8 13 13 H 1.08004 * 120.00008 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00004 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00307 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00235 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46674 * 60.00066 * 16 14 12 18 18 H 1.48497 * 109.47212 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46802 * 300.00442 * 16 14 12 20 20 C 1.46506 * 119.99868 * 180.02562 * 10 8 7 21 21 C 1.50703 * 109.47289 * 89.99907 * 20 10 8 22 22 C 1.38668 * 120.41699 * 269.72232 * 21 20 10 23 23 C 1.38633 * 118.42041 * 179.78557 * 22 21 20 24 24 C 1.38224 * 119.15591 * 0.51099 * 23 22 21 25 25 N 1.31860 * 120.76804 * 359.72581 * 24 23 22 26 26 C 1.31892 * 121.72207 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.47013 * 270.04069 * 1 2 3 28 28 H 1.08997 * 109.47145 * 30.04296 * 1 2 3 29 29 H 1.08996 * 109.47215 * 150.03984 * 1 2 3 30 30 H 1.07996 * 126.57964 * 359.97438 * 3 2 1 31 31 H 1.07994 * 125.78896 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.47198 * 149.69264 * 7 6 5 33 33 H 1.09003 * 109.46308 * 29.70196 * 7 6 5 34 34 H 1.08997 * 109.46694 * 29.99578 * 11 10 8 35 35 H 1.08995 * 109.47258 * 149.99854 * 11 10 8 36 36 H 0.96996 * 120.00505 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.47060 * 210.00357 * 20 10 8 38 38 H 1.09004 * 109.47073 * 329.99846 * 20 10 8 39 39 H 1.08000 * 120.79413 * 0.02562 * 22 21 20 40 40 H 1.07992 * 120.42251 * 180.21754 * 23 22 21 41 41 H 1.07998 * 119.61684 * 179.75282 * 24 23 22 42 42 H 1.07992 * 119.61024 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5847 -0.6618 0.0067 6 6 2.3086 -1.0802 0.0006 7 6 1.8521 -2.5164 0.0007 8 6 1.7004 -2.9955 -1.4200 9 8 1.9391 -2.2444 -2.3420 10 7 1.2996 -4.2585 -1.6661 11 6 1.0107 -5.1655 -0.5526 12 6 2.2659 -5.9065 -0.1697 13 1 3.1866 -5.7207 -0.7028 14 6 2.2389 -6.8216 0.8612 15 7 1.1179 -7.0476 1.5108 16 14 3.7945 -7.7407 1.3354 17 1 4.8383 -6.7677 1.7466 18 1 3.5018 -8.6600 2.4642 19 1 4.2800 -8.5252 0.1718 20 6 1.1527 -4.7244 -3.0474 21 6 2.4565 -5.3141 -3.5200 22 6 3.4029 -4.5156 -4.1440 23 6 4.5898 -5.1002 -4.5582 24 6 4.7844 -6.4522 -4.3464 25 7 3.8598 -7.1820 -3.7538 26 6 2.7212 -6.6586 -3.3424 27 1 -0.3633 0.0007 1.0276 28 1 -0.3633 0.8896 -0.5145 29 1 -0.3633 -0.8903 -0.5132 30 1 2.0367 2.1690 -0.0004 31 1 4.5060 1.2922 0.0011 32 1 0.8937 -2.5930 0.5143 33 1 2.5900 -3.1321 0.5150 34 1 0.6538 -4.5900 0.3015 35 1 0.2450 -5.8799 -0.8550 36 1 1.0989 -7.6911 2.2363 37 1 0.3723 -5.4840 -3.0935 38 1 0.8806 -3.8848 -3.6870 39 1 3.2215 -3.4625 -4.3002 40 1 5.3507 -4.5078 -5.0444 41 1 5.7045 -6.9160 -4.6697 42 1 1.9875 -7.2882 -2.8613 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596964785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:51 Heat of formation + Delta-G solvation = 10.284678 kcal Electronic energy + Delta-G solvation = -26351.489574 eV Core-core repulsion = 22684.212877 eV Total energy + Delta-G solvation = -3667.276697 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.29816 -39.90776 -38.84689 -35.29810 -33.99403 -33.05145 -32.15829 -31.64611 -30.98085 -28.64881 -27.59180 -26.41053 -25.06328 -23.18275 -22.86889 -21.82943 -21.16206 -19.71091 -18.42894 -16.89417 -16.78347 -16.54311 -16.51402 -15.75801 -15.55711 -15.25297 -15.01110 -14.54422 -14.32555 -13.80460 -13.46071 -13.09721 -12.94422 -12.86139 -12.68546 -12.55973 -12.47638 -12.33208 -12.17774 -11.79470 -11.72556 -11.48121 -11.32110 -11.08143 -10.90639 -10.72968 -10.23408 -9.84090 -9.45030 -9.34283 -9.22959 -9.03203 -8.63924 -8.50639 -8.01224 -7.85907 -6.22865 -4.29836 1.52187 1.74609 2.03033 2.83150 3.23751 3.26093 3.28450 3.29796 3.37808 3.89109 4.31427 4.39758 4.88698 4.93583 5.10368 5.13517 5.15577 5.19514 5.32314 5.33169 5.44284 5.54471 5.63010 5.64652 5.73065 5.83357 5.95521 5.99858 6.03555 6.07448 6.13911 6.25525 6.28388 6.46209 6.53447 6.60358 6.76455 6.84514 7.05307 7.16168 7.39262 7.46908 7.72096 7.98154 8.16523 8.43635 8.72334 8.88131 9.39397 10.83654 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010448 B = 0.005454 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.187710 B = 5132.444282 C = 6447.085666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.180 4.180 3 C -0.210 4.210 4 C -0.049 4.049 5 O -0.170 6.170 6 C 0.025 3.975 7 C -0.060 4.060 8 C 0.523 3.477 9 O -0.562 6.562 10 N -0.591 5.591 11 C 0.235 3.765 12 C -0.536 4.536 13 H 0.060 0.940 14 C 0.071 3.929 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.271 1.271 20 C 0.165 3.835 21 C -0.143 4.143 22 C -0.058 4.058 23 C -0.187 4.187 24 C 0.090 3.910 25 N -0.492 5.492 26 C 0.139 3.861 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.142 0.858 31 H 0.197 0.803 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.266 0.734 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.146 0.854 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.344 9.500 -5.460 10.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.181 4.181 3 C -0.229 4.229 4 C -0.117 4.117 5 O -0.066 6.066 6 C -0.025 4.025 7 C -0.099 4.099 8 C 0.311 3.689 9 O -0.442 6.442 10 N -0.321 5.321 11 C 0.115 3.885 12 C -0.574 4.574 13 H 0.078 0.922 14 C -0.132 4.132 15 N -0.528 5.528 16 Si 0.716 3.284 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.196 1.196 20 C 0.041 3.959 21 C -0.146 4.146 22 C -0.084 4.084 23 C -0.207 4.207 24 C -0.067 4.067 25 N -0.200 5.200 26 C -0.019 4.019 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.214 0.786 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.164 0.836 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.748 8.660 -5.639 10.361 hybrid contribution 0.878 0.489 0.417 1.088 sum 1.626 9.148 -5.222 10.659 Atomic orbital electron populations 1.20119 0.89554 1.02383 1.01540 1.20088 0.96916 0.91949 1.09129 1.21589 0.92703 0.99398 1.09221 1.23829 0.99475 0.80912 1.07445 1.84015 1.29049 1.22498 1.71053 1.21642 0.80769 0.95555 1.04571 1.20139 1.04501 0.88491 0.96790 1.20146 0.76582 0.81807 0.90347 1.90615 1.51716 1.55644 1.46215 1.48244 1.65162 1.11541 1.07171 1.19545 0.97060 0.88559 0.83307 1.21387 0.95816 1.23055 1.17160 0.92212 1.24862 0.96200 0.96423 0.95763 1.69891 1.25786 1.34756 1.22369 0.86681 0.83453 0.79935 0.78380 1.20237 1.21135 1.19630 1.20117 0.93043 0.98920 0.83788 1.21230 0.98778 0.95288 0.99301 1.21574 0.92600 1.00131 0.94123 1.22019 0.98527 0.96619 1.03535 1.22644 0.97697 0.91085 0.95298 1.67707 1.02046 1.40059 1.10194 1.22719 0.93648 0.92742 0.92740 0.91761 0.91923 0.91777 0.83974 0.78626 0.86301 0.86097 0.94226 0.94290 0.92414 0.89676 0.89988 0.84892 0.85627 0.83640 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 9.99 36.00 0.36 -0.69 16 2 C -0.18 -2.86 6.16 -104.74 -0.65 -3.50 16 3 C -0.21 -2.96 10.87 -39.70 -0.43 -3.40 16 4 C -0.05 -0.69 12.09 29.42 0.36 -0.34 16 5 O -0.17 -3.05 10.65 5.70 0.06 -2.99 16 6 C 0.03 0.45 5.81 -35.62 -0.21 0.25 16 7 C -0.06 -1.08 4.41 -29.04 -0.13 -1.21 16 8 C 0.52 10.30 7.66 -10.99 -0.08 10.21 16 9 O -0.56 -11.97 15.27 5.55 0.08 -11.89 16 10 N -0.59 -11.41 2.44 -176.43 -0.43 -11.84 16 11 C 0.23 5.07 5.01 -5.19 -0.03 5.04 16 12 C -0.54 -13.09 8.73 -34.44 -0.30 -13.39 16 13 H 0.06 1.56 7.58 -52.48 -0.40 1.16 16 14 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 15 N -0.89 -23.47 13.29 55.43 0.74 -22.73 16 16 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.17 2.82 5.60 -5.19 -0.03 2.79 16 21 C -0.14 -2.54 5.48 -104.49 -0.57 -3.12 16 22 C -0.06 -0.98 9.86 -39.28 -0.39 -1.37 16 23 C -0.19 -2.87 10.11 -39.44 -0.40 -3.27 16 24 C 0.09 1.45 11.18 -17.54 -0.20 1.25 16 25 N -0.49 -9.29 10.36 -13.26 -0.14 -9.43 16 26 C 0.14 2.60 10.08 -17.55 -0.18 2.42 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.88 7.78 -51.93 -0.40 0.48 16 30 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.20 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.12 1.93 7.02 -51.93 -0.36 1.57 16 33 H 0.12 2.34 8.00 -51.93 -0.42 1.92 16 34 H 0.04 0.87 6.44 -51.93 -0.33 0.54 16 35 H 0.04 0.87 7.89 -51.93 -0.41 0.46 16 36 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.08 1.30 7.85 -51.93 -0.41 0.89 16 38 H 0.08 1.35 7.37 -51.93 -0.38 0.96 16 39 H 0.13 2.26 7.71 -52.49 -0.40 1.85 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.16 2.94 8.06 -52.49 -0.42 2.51 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -30.17 363.90 -7.80 -37.97 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.62 Total: 6.32 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.97 Total: -6.60 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.17 Total: -44.00 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.15 Total: -14.88 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.17 -7.80 -37.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596964785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.260 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds