Wall clock time and date at job start Tue Mar 31 2020 11:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41384 * 126.58115 * 2 1 4 4 C 1.34516 * 106.83983 * 179.97438 * 3 2 1 5 5 O 1.34310 * 108.42133 * 359.74035 * 4 3 2 6 6 C 1.34298 * 109.47411 * 0.43054 * 5 4 3 7 7 C 1.50703 * 125.79085 * 179.82329 * 6 5 4 8 8 C 1.50696 * 109.47568 * 269.69953 * 7 6 5 9 9 O 1.21289 * 119.99762 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00038 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00377 * 0.02562 * 10 8 7 12 12 C 1.50704 * 109.47158 * 270.00187 * 11 10 8 13 13 H 1.08004 * 120.00008 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00004 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00307 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00235 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46674 * 60.00066 * 16 14 12 18 18 H 1.48497 * 109.47212 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46802 * 300.00442 * 16 14 12 20 20 C 1.46506 * 119.99868 * 180.02562 * 10 8 7 21 21 C 1.50703 * 109.47289 * 89.99907 * 20 10 8 22 22 C 1.38668 * 120.41699 * 269.72232 * 21 20 10 23 23 C 1.38633 * 118.42041 * 179.78557 * 22 21 20 24 24 C 1.38224 * 119.15591 * 0.51099 * 23 22 21 25 25 N 1.31860 * 120.76804 * 359.72581 * 24 23 22 26 26 C 1.31892 * 121.72207 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.47013 * 270.04069 * 1 2 3 28 28 H 1.08997 * 109.47145 * 30.04296 * 1 2 3 29 29 H 1.08996 * 109.47215 * 150.03984 * 1 2 3 30 30 H 1.07996 * 126.57964 * 359.97438 * 3 2 1 31 31 H 1.07994 * 125.78896 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.47198 * 149.69264 * 7 6 5 33 33 H 1.09003 * 109.46308 * 29.70196 * 7 6 5 34 34 H 1.08997 * 109.46694 * 29.99578 * 11 10 8 35 35 H 1.08995 * 109.47258 * 149.99854 * 11 10 8 36 36 H 0.96996 * 120.00505 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.47060 * 210.00357 * 20 10 8 38 38 H 1.09004 * 109.47073 * 329.99846 * 20 10 8 39 39 H 1.08000 * 120.79413 * 0.02562 * 22 21 20 40 40 H 1.07992 * 120.42251 * 180.21754 * 23 22 21 41 41 H 1.07998 * 119.61684 * 179.75282 * 24 23 22 42 42 H 1.07992 * 119.61024 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5847 -0.6618 0.0067 6 6 2.3086 -1.0802 0.0006 7 6 1.8521 -2.5164 0.0007 8 6 1.7004 -2.9955 -1.4200 9 8 1.9391 -2.2444 -2.3420 10 7 1.2996 -4.2585 -1.6661 11 6 1.0107 -5.1655 -0.5526 12 6 2.2659 -5.9065 -0.1697 13 1 3.1866 -5.7207 -0.7028 14 6 2.2389 -6.8216 0.8612 15 7 1.1179 -7.0476 1.5108 16 14 3.7945 -7.7407 1.3354 17 1 4.8383 -6.7677 1.7466 18 1 3.5018 -8.6600 2.4642 19 1 4.2800 -8.5252 0.1718 20 6 1.1527 -4.7244 -3.0474 21 6 2.4565 -5.3141 -3.5200 22 6 3.4029 -4.5156 -4.1440 23 6 4.5898 -5.1002 -4.5582 24 6 4.7844 -6.4522 -4.3464 25 7 3.8598 -7.1820 -3.7538 26 6 2.7212 -6.6586 -3.3424 27 1 -0.3633 0.0007 1.0276 28 1 -0.3633 0.8896 -0.5145 29 1 -0.3633 -0.8903 -0.5132 30 1 2.0367 2.1690 -0.0004 31 1 4.5060 1.2922 0.0011 32 1 0.8937 -2.5930 0.5143 33 1 2.5900 -3.1321 0.5150 34 1 0.6538 -4.5900 0.3015 35 1 0.2450 -5.8799 -0.8550 36 1 1.0989 -7.6911 2.2363 37 1 0.3723 -5.4840 -3.0935 38 1 0.8806 -3.8848 -3.6870 39 1 3.2215 -3.4625 -4.3002 40 1 5.3507 -4.5078 -5.0444 41 1 5.7045 -6.9160 -4.6697 42 1 1.9875 -7.2882 -2.8613 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596964785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:50 Heat of formation + Delta-G solvation = -5.542435 kcal Electronic energy + Delta-G solvation = -26352.175889 eV Core-core repulsion = 22684.212877 eV Total energy + Delta-G solvation = -3667.963012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.49366 -41.31773 -40.33737 -36.90712 -35.22289 -34.77468 -33.71452 -32.95091 -32.30597 -29.83124 -29.35368 -27.74518 -26.40163 -24.88464 -24.35715 -23.16760 -22.31441 -20.97707 -19.89145 -18.69419 -18.23142 -17.95281 -17.83573 -17.09421 -16.97233 -16.68195 -16.63354 -16.06173 -15.81574 -15.09359 -14.81484 -14.44132 -14.35639 -14.17464 -14.07296 -13.92881 -13.89020 -13.59283 -13.45874 -13.34350 -13.18952 -13.02769 -12.85565 -12.68686 -12.42505 -12.29074 -12.04564 -11.71540 -10.97290 -10.69002 -10.55522 -10.46398 -10.41242 -9.89834 -9.48990 -9.21731 -8.20132 -6.29754 0.19414 0.39674 0.82202 1.37007 1.40320 1.46183 1.68145 1.71569 2.09388 2.36619 2.48806 3.00951 3.12711 3.61325 3.70992 3.79330 3.96452 4.00226 4.03750 4.09905 4.13027 4.18391 4.31598 4.48103 4.54227 4.66748 4.67686 4.75828 4.83307 4.90244 4.92370 4.92903 4.99111 5.19106 5.22126 5.24676 5.35252 5.41455 5.66944 5.74242 5.80489 5.84050 6.07485 6.28927 6.51117 6.81706 7.09052 7.25905 7.42208 8.85262 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010448 B = 0.005454 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.187710 B = 5132.444282 C = 6447.085666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.179 4.179 3 C -0.218 4.218 4 C -0.046 4.046 5 O -0.199 6.199 6 C -0.017 4.017 7 C -0.052 4.052 8 C 0.522 3.478 9 O -0.577 6.577 10 N -0.590 5.590 11 C 0.249 3.751 12 C -0.527 4.527 13 H 0.042 0.958 14 C 0.036 3.964 15 N -0.912 5.912 16 Si 0.932 3.068 17 H -0.279 1.279 18 H -0.279 1.279 19 H -0.280 1.280 20 C 0.163 3.837 21 C -0.151 4.151 22 C -0.068 4.068 23 C -0.177 4.177 24 C 0.085 3.915 25 N -0.518 5.518 26 C 0.122 3.878 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.174 0.826 31 H 0.237 0.763 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.267 0.733 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.133 0.867 40 H 0.161 0.839 41 H 0.180 0.820 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.120 11.098 -5.946 12.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.181 4.181 3 C -0.237 4.237 4 C -0.113 4.113 5 O -0.096 6.096 6 C -0.067 4.067 7 C -0.092 4.092 8 C 0.311 3.689 9 O -0.459 6.459 10 N -0.320 5.320 11 C 0.128 3.872 12 C -0.566 4.566 13 H 0.060 0.940 14 C -0.165 4.165 15 N -0.552 5.552 16 Si 0.759 3.241 17 H -0.205 1.205 18 H -0.204 1.204 19 H -0.205 1.205 20 C 0.040 3.960 21 C -0.154 4.154 22 C -0.095 4.095 23 C -0.197 4.197 24 C -0.072 4.072 25 N -0.227 5.227 26 C -0.035 4.035 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.191 0.809 31 H 0.253 0.747 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.150 0.850 40 H 0.179 0.821 41 H 0.197 0.803 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.513 10.255 -6.129 12.042 hybrid contribution 0.707 0.083 0.494 0.866 sum 2.220 10.338 -5.635 11.981 Atomic orbital electron populations 1.20204 0.88012 1.02724 1.02720 1.20561 0.98225 0.92096 1.07178 1.21999 0.92346 1.00387 1.08993 1.24755 1.01333 0.79793 1.05397 1.83981 1.29310 1.24474 1.71827 1.21638 0.81405 0.95623 1.07993 1.20008 1.04526 0.89097 0.95544 1.20431 0.76001 0.81601 0.90912 1.90586 1.52458 1.55972 1.46875 1.48189 1.65028 1.11208 1.07543 1.19232 0.95581 0.88404 0.83938 1.21438 0.96001 1.22740 1.16375 0.94002 1.25323 0.97832 0.97260 0.96132 1.69939 1.26734 1.35526 1.22961 0.86011 0.81289 0.78988 0.77846 1.20503 1.20425 1.20543 1.20273 0.93504 0.99595 0.82670 1.21244 0.99248 0.95085 0.99807 1.21717 0.93272 1.00088 0.94384 1.22386 0.98418 0.96633 1.02224 1.23233 0.98120 0.91552 0.94304 1.67681 1.02619 1.41230 1.11192 1.22616 0.93985 0.93094 0.93798 0.90106 0.90125 0.92858 0.80898 0.74659 0.85118 0.88090 0.94459 0.94890 0.92375 0.88245 0.89225 0.84960 0.82128 0.80324 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.99 9.99 71.24 0.71 -1.27 16 2 C -0.18 -5.47 6.16 -19.94 -0.12 -5.60 16 3 C -0.22 -5.63 10.87 22.19 0.24 -5.39 16 4 C -0.05 -1.21 12.09 66.97 0.81 -0.40 16 5 O -0.20 -7.03 10.65 -2.50 -0.03 -7.06 16 6 C -0.02 -0.59 5.81 24.84 0.14 -0.45 16 7 C -0.05 -1.94 4.41 29.10 0.13 -1.81 16 8 C 0.52 20.74 7.66 87.66 0.67 21.42 16 9 O -0.58 -24.64 15.27 -3.06 -0.05 -24.69 16 10 N -0.59 -23.03 2.44 -830.48 -2.03 -25.05 16 11 C 0.25 10.91 5.01 85.63 0.43 11.34 16 12 C -0.53 -26.14 8.73 25.60 0.22 -25.91 16 13 H 0.04 2.22 7.58 -2.91 -0.02 2.20 16 14 C 0.04 1.83 5.46 84.65 0.46 2.29 16 15 N -0.91 -48.37 13.29 21.44 0.28 -48.08 16 16 Si 0.93 42.78 29.54 68.60 2.03 44.80 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 C 0.16 5.58 5.60 85.63 0.48 6.06 16 21 C -0.15 -5.38 5.48 -19.78 -0.11 -5.49 16 22 C -0.07 -2.26 9.86 22.47 0.22 -2.03 16 23 C -0.18 -5.07 10.11 22.36 0.23 -4.85 16 24 C 0.08 2.58 11.18 84.69 0.95 3.53 16 25 N -0.52 -19.40 10.36 -195.85 -2.03 -21.43 16 26 C 0.12 4.63 10.08 84.67 0.85 5.48 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.05 1.43 7.78 -2.39 -0.02 1.41 16 30 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.24 3.79 8.06 -2.91 -0.02 3.77 16 32 H 0.13 4.33 7.02 -2.39 -0.02 4.32 16 33 H 0.10 4.07 8.00 -2.39 -0.02 4.05 16 34 H 0.04 1.67 6.44 -2.39 -0.02 1.65 16 35 H 0.03 1.50 7.89 -2.39 -0.02 1.48 16 36 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 37 H 0.10 3.06 7.85 -2.39 -0.02 3.04 16 38 H 0.09 2.93 7.37 -2.38 -0.02 2.91 16 39 H 0.13 4.39 7.71 -2.91 -0.02 4.37 16 40 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.18 4.10 8.06 -2.91 -0.02 4.07 16 42 H 0.15 5.68 8.06 -2.91 -0.02 5.66 16 Total: -1.00 -64.64 363.90 5.52 -59.12 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 1.02 Total: 25.48 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 6.32 Total: -3.08 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -3.77 Total: -94.57 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.07 Total: -31.75 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -64.64 5.52 -59.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596964785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.575 kcal (2) G-P(sol) polarization free energy of solvation -64.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds