Wall clock time and date at job start Tue Mar 31 2020 12:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 110.43313 * 2 1 4 4 C 1.54457 * 110.47269 * 237.71004 * 2 1 3 5 5 O 1.44688 * 103.65149 * 218.84430 * 4 2 1 6 6 C 1.44379 * 103.95229 * 37.83155 * 5 4 2 7 7 N 1.47585 * 105.71061 * 320.28122 * 6 5 4 8 8 C 1.34773 * 127.02191 * 204.63886 * 7 6 5 9 9 O 1.21670 * 120.00183 * 181.38283 * 8 7 6 10 10 C 1.46884 * 120.00161 * 1.38704 * 8 7 6 11 11 C 1.36132 * 125.43573 * 351.21024 * 10 8 7 12 12 C 1.41701 * 107.74790 * 180.25471 * 11 10 8 13 13 C 1.40020 * 133.34612 * 179.80780 * 12 11 10 14 14 C 1.36579 * 119.82891 * 179.97438 * 13 12 11 15 15 C 1.38860 * 120.59800 * 359.95112 * 14 13 12 16 16 C 1.37844 * 120.63192 * 0.02562 * 15 14 13 17 17 C 1.39080 * 119.81872 * 0.02562 * 16 15 14 18 18 N 1.37834 * 133.16798 * 180.02562 * 17 16 15 19 19 C 1.36897 * 125.61838 * 359.97196 * 18 17 16 20 20 H 1.07993 * 119.99964 * 227.77534 * 19 18 17 21 21 C 1.39012 * 119.99666 * 47.77525 * 19 18 17 22 22 N 1.31348 * 119.99617 * 186.57833 * 21 19 18 23 23 Si 1.86797 * 120.00294 * 6.57239 * 21 19 18 24 24 H 1.48498 * 109.46987 * 264.55456 * 23 21 19 25 25 H 1.48497 * 109.47086 * 24.55471 * 23 21 19 26 26 H 1.48498 * 109.47217 * 144.55446 * 23 21 19 27 27 H 1.09005 * 109.47458 * 297.66737 * 1 2 3 28 28 H 1.08999 * 109.47455 * 57.66171 * 1 2 3 29 29 H 1.09003 * 109.47846 * 177.66395 * 1 2 3 30 30 H 1.09004 * 109.46970 * 182.33557 * 3 2 1 31 31 H 1.08995 * 109.47060 * 302.33890 * 3 2 1 32 32 H 1.09004 * 109.46907 * 62.33388 * 3 2 1 33 33 H 1.09004 * 110.73140 * 100.22177 * 4 2 1 34 34 H 1.08997 * 110.40383 * 337.31660 * 4 2 1 35 35 H 1.09003 * 110.20077 * 201.22216 * 6 5 4 36 36 H 1.08999 * 110.19954 * 79.34528 * 6 5 4 37 37 H 1.08004 * 126.12318 * 0.02562 * 11 10 8 38 38 H 1.07995 * 120.08800 * 359.93768 * 13 12 11 39 39 H 1.08002 * 119.70279 * 179.97438 * 14 13 12 40 40 H 1.08004 * 119.68127 * 180.02562 * 15 14 13 41 41 H 1.08007 * 120.08754 * 179.97438 * 16 15 14 42 42 H 0.97005 * 120.00086 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0641 1.4337 0.0000 4 6 2.0702 -0.7730 -1.2232 5 8 3.2155 -1.4848 -0.6988 6 6 2.8006 -1.8849 0.6249 7 7 2.0443 -0.7405 1.1696 8 6 1.8563 -0.4366 2.4691 9 8 1.1851 0.5303 2.7769 10 6 2.4620 -1.2727 3.5139 11 6 3.0861 -2.4649 3.3077 12 6 3.5216 -2.9478 4.5667 13 6 4.2040 -4.1022 4.9695 14 6 4.4913 -4.2954 6.2907 15 6 4.1135 -3.3559 7.2409 16 6 3.4413 -2.2115 6.8685 17 6 3.1367 -1.9932 5.5292 18 7 2.4917 -0.9735 4.8629 19 6 1.9639 0.1489 5.4423 20 1 0.9631 0.4669 5.1903 21 6 2.7163 0.8792 6.3550 22 7 2.1680 1.8787 7.0073 23 14 4.5069 0.4391 6.6538 24 1 4.6066 -0.4525 7.8372 25 1 5.0507 -0.2587 5.4611 26 1 5.2867 1.6784 6.9006 27 1 -0.3634 0.4772 0.9102 28 1 -0.3634 0.5497 -0.8683 29 1 -0.3635 -1.0268 -0.0419 30 1 3.1532 1.4157 -0.0419 31 1 1.6758 1.9661 -0.8682 32 1 1.7438 1.9407 0.9102 33 1 2.3746 -0.0842 -2.0113 34 1 1.3201 -1.4723 -1.5924 35 1 3.6721 -2.0902 1.2466 36 1 2.1615 -2.7660 0.5687 37 1 3.2215 -2.9564 2.3556 38 1 4.5019 -4.8383 4.2376 39 1 5.0173 -5.1867 6.5993 40 1 4.3486 -3.5234 8.2816 41 1 3.1513 -1.4868 7.6150 42 1 2.6930 2.3886 7.6440 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597616558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:06 Heat of formation + Delta-G solvation = 15.911932 kcal Electronic energy + Delta-G solvation = -27122.500599 eV Core-core repulsion = 23455.467918 eV Total energy + Delta-G solvation = -3667.032681 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.06988 -40.21377 -37.78967 -36.14394 -34.48501 -33.81228 -32.60374 -31.28437 -29.30109 -28.27074 -27.31423 -26.48723 -25.49009 -24.91189 -23.22540 -21.50841 -20.54636 -20.13199 -18.69379 -18.11590 -16.74301 -16.48205 -15.87384 -15.75999 -15.38253 -15.15242 -14.60145 -14.44790 -14.14765 -13.97049 -13.56555 -13.36125 -13.30247 -13.13796 -13.03546 -12.82485 -12.38089 -12.29738 -12.04581 -11.79853 -11.53200 -11.37629 -11.29834 -11.04821 -10.90342 -10.82540 -10.54214 -10.20685 -10.06628 -9.92655 -9.47454 -9.21737 -8.72222 -8.53950 -7.39642 -7.02738 -6.79131 -4.54358 1.50837 2.42743 2.74769 2.89088 3.02795 3.14877 3.24103 3.75926 3.91696 4.05940 4.25964 4.51520 4.56999 4.72382 4.75640 4.85943 5.13756 5.22527 5.31458 5.41163 5.47774 5.52514 5.59932 5.64773 5.67735 5.77791 5.86139 5.93516 5.99929 6.05826 6.14446 6.33121 6.35543 6.39128 6.50584 6.58620 6.73662 6.79854 7.14063 7.25685 7.28475 7.53102 7.55892 7.74617 7.87428 8.24976 8.65186 8.76983 9.03442 10.24604 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015049 B = 0.005726 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.086367 B = 4888.393310 C = 6146.981069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.133 3.867 3 C -0.155 4.155 4 C 0.045 3.955 5 O -0.370 6.370 6 C 0.250 3.750 7 N -0.631 5.631 8 C 0.611 3.389 9 O -0.507 6.507 10 C -0.005 4.005 11 C -0.217 4.217 12 C -0.116 4.116 13 C -0.081 4.081 14 C -0.155 4.155 15 C -0.131 4.131 16 C -0.107 4.107 17 C 0.055 3.945 18 N -0.252 5.252 19 C -0.331 4.331 20 H 0.130 0.870 21 C 0.078 3.922 22 N -0.832 5.832 23 Si 0.875 3.125 24 H -0.249 1.249 25 H -0.252 1.252 26 H -0.284 1.284 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.143 0.857 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.710 -7.260 -11.412 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.049 3.951 3 C -0.213 4.213 4 C -0.032 4.032 5 O -0.286 6.286 6 C 0.090 3.910 7 N -0.375 5.375 8 C 0.402 3.598 9 O -0.381 6.381 10 C -0.122 4.122 11 C -0.243 4.243 12 C -0.121 4.121 13 C -0.100 4.100 14 C -0.174 4.174 15 C -0.152 4.152 16 C -0.127 4.127 17 C -0.058 4.058 18 N 0.086 4.914 19 C -0.459 4.459 20 H 0.147 0.853 21 C -0.135 4.135 22 N -0.462 5.462 23 Si 0.700 3.300 24 H -0.174 1.174 25 H -0.176 1.176 26 H -0.211 1.211 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.160 0.840 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.369 -6.198 -10.953 12.659 hybrid contribution 0.639 0.027 0.353 0.731 sum 2.008 -6.171 -10.599 12.428 Atomic orbital electron populations 1.22080 0.93219 1.02318 1.03605 1.21717 0.94990 0.93524 0.84891 1.22087 1.01367 0.94437 1.03391 1.23892 0.88538 0.95090 0.95646 1.89377 1.36309 1.74256 1.28627 1.24015 0.96728 0.88234 0.82050 1.48990 1.54929 1.28797 1.04762 1.16627 0.80104 0.83734 0.79320 1.90826 1.38758 1.27857 1.80627 1.19622 1.09115 0.98673 0.84784 1.20892 1.08590 0.97813 0.97036 1.17940 1.04963 0.96114 0.93054 1.20153 0.98704 0.95620 0.95477 1.20376 1.04216 0.99670 0.93162 1.20577 1.01440 0.94430 0.98720 1.20281 1.00674 0.98470 0.93246 1.18443 1.04159 0.89643 0.93549 1.40182 1.35391 1.13400 1.02393 1.19604 1.02334 1.00803 1.23174 0.85256 1.25536 0.99547 0.94169 0.94247 1.69610 1.37842 1.17041 1.21720 0.86915 0.83071 0.78307 0.81676 1.17389 1.17565 1.21083 0.90372 0.91574 0.92392 0.92131 0.91760 0.90412 0.87785 0.91026 0.86168 0.91161 0.84002 0.87102 0.87187 0.86868 0.86083 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.58 37.16 0.32 -1.64 16 2 C 0.13 1.83 0.95 -130.41 -0.12 1.71 16 3 C -0.15 -2.17 8.53 37.16 0.32 -1.85 16 4 C 0.05 0.49 6.85 37.92 0.26 0.75 16 5 O -0.37 -4.92 11.78 -35.23 -0.42 -5.34 16 6 C 0.25 3.46 6.14 60.44 0.37 3.83 16 7 N -0.63 -10.60 2.89 -162.47 -0.47 -11.07 16 8 C 0.61 13.15 7.48 -12.76 -0.10 13.05 16 9 O -0.51 -12.47 13.22 5.22 0.07 -12.40 16 10 C -0.01 -0.11 6.74 -82.25 -0.55 -0.67 16 11 C -0.22 -4.28 9.21 -39.02 -0.36 -4.64 16 12 C -0.12 -2.45 6.16 -106.89 -0.66 -3.11 16 13 C -0.08 -1.44 10.06 -39.51 -0.40 -1.84 16 14 C -0.16 -2.65 9.97 -39.95 -0.40 -3.04 16 15 C -0.13 -2.45 10.02 -39.50 -0.40 -2.85 16 16 C -0.11 -2.38 6.69 -39.41 -0.26 -2.64 16 17 C 0.06 1.32 4.82 -83.84 -0.40 0.91 16 18 N -0.25 -6.44 2.41 -56.08 -0.14 -6.58 16 19 C -0.33 -9.28 9.13 -15.00 -0.14 -9.42 16 20 H 0.13 3.97 7.37 -52.49 -0.39 3.58 16 21 C 0.08 2.13 5.28 -17.47 -0.09 2.04 16 22 N -0.83 -23.28 13.95 55.50 0.77 -22.50 16 23 Si 0.88 21.19 23.64 -169.99 -4.02 17.17 16 24 H -0.25 -5.59 5.70 56.52 0.32 -5.27 16 25 H -0.25 -6.42 6.71 56.52 0.38 -6.04 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H 0.08 1.24 7.03 -51.93 -0.37 0.88 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.34 6.97 -51.93 -0.36 0.98 16 33 H 0.10 0.91 7.86 -51.93 -0.41 0.50 16 34 H 0.07 0.64 7.82 -51.93 -0.41 0.23 16 35 H 0.12 1.70 5.35 -51.93 -0.28 1.43 16 36 H 0.07 0.83 8.04 -51.93 -0.42 0.42 16 37 H 0.14 2.21 4.62 -52.48 -0.24 1.97 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.11 1.79 8.06 -52.48 -0.42 1.36 16 41 H 0.12 2.77 5.64 -52.48 -0.30 2.47 16 42 H 0.29 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 329.74 15.07 4.97 4.97 Total: -1.00 -31.36 329.74 -7.20 -38.56 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.36 Total: 6.59 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -2.61 Total: -9.41 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.17 Total: -40.15 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.35 Total: -17.74 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.02 Total: 17.17 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.36 -7.20 -38.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597616558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.473 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds