Wall clock time and date at job start Tue Mar 31 2020 12:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 110.43313 * 2 1 4 4 C 1.54457 * 110.47269 * 237.71004 * 2 1 3 5 5 O 1.44688 * 103.65149 * 218.84430 * 4 2 1 6 6 C 1.44379 * 103.95229 * 37.83155 * 5 4 2 7 7 N 1.47585 * 105.71061 * 320.28122 * 6 5 4 8 8 C 1.34773 * 127.02191 * 204.63886 * 7 6 5 9 9 O 1.21670 * 120.00183 * 181.38283 * 8 7 6 10 10 C 1.46884 * 120.00161 * 1.38704 * 8 7 6 11 11 C 1.36132 * 125.43573 * 351.21024 * 10 8 7 12 12 C 1.41701 * 107.74790 * 180.25471 * 11 10 8 13 13 C 1.40020 * 133.34612 * 179.80780 * 12 11 10 14 14 C 1.36579 * 119.82891 * 179.97438 * 13 12 11 15 15 C 1.38860 * 120.59800 * 359.95112 * 14 13 12 16 16 C 1.37844 * 120.63192 * 0.02562 * 15 14 13 17 17 C 1.39080 * 119.81872 * 0.02562 * 16 15 14 18 18 N 1.37834 * 133.16798 * 180.02562 * 17 16 15 19 19 C 1.36897 * 125.61838 * 359.97196 * 18 17 16 20 20 H 1.07993 * 119.99964 * 227.77534 * 19 18 17 21 21 C 1.39012 * 119.99666 * 47.77525 * 19 18 17 22 22 N 1.31348 * 119.99617 * 186.57833 * 21 19 18 23 23 Si 1.86797 * 120.00294 * 6.57239 * 21 19 18 24 24 H 1.48498 * 109.46987 * 264.55456 * 23 21 19 25 25 H 1.48497 * 109.47086 * 24.55471 * 23 21 19 26 26 H 1.48498 * 109.47217 * 144.55446 * 23 21 19 27 27 H 1.09005 * 109.47458 * 297.66737 * 1 2 3 28 28 H 1.08999 * 109.47455 * 57.66171 * 1 2 3 29 29 H 1.09003 * 109.47846 * 177.66395 * 1 2 3 30 30 H 1.09004 * 109.46970 * 182.33557 * 3 2 1 31 31 H 1.08995 * 109.47060 * 302.33890 * 3 2 1 32 32 H 1.09004 * 109.46907 * 62.33388 * 3 2 1 33 33 H 1.09004 * 110.73140 * 100.22177 * 4 2 1 34 34 H 1.08997 * 110.40383 * 337.31660 * 4 2 1 35 35 H 1.09003 * 110.20077 * 201.22216 * 6 5 4 36 36 H 1.08999 * 110.19954 * 79.34528 * 6 5 4 37 37 H 1.08004 * 126.12318 * 0.02562 * 11 10 8 38 38 H 1.07995 * 120.08800 * 359.93768 * 13 12 11 39 39 H 1.08002 * 119.70279 * 179.97438 * 14 13 12 40 40 H 1.08004 * 119.68127 * 180.02562 * 15 14 13 41 41 H 1.08007 * 120.08754 * 179.97438 * 16 15 14 42 42 H 0.97005 * 120.00086 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0641 1.4337 0.0000 4 6 2.0702 -0.7730 -1.2232 5 8 3.2155 -1.4848 -0.6988 6 6 2.8006 -1.8849 0.6249 7 7 2.0443 -0.7405 1.1696 8 6 1.8563 -0.4366 2.4691 9 8 1.1851 0.5303 2.7769 10 6 2.4620 -1.2727 3.5139 11 6 3.0861 -2.4649 3.3077 12 6 3.5216 -2.9478 4.5667 13 6 4.2040 -4.1022 4.9695 14 6 4.4913 -4.2954 6.2907 15 6 4.1135 -3.3559 7.2409 16 6 3.4413 -2.2115 6.8685 17 6 3.1367 -1.9932 5.5292 18 7 2.4917 -0.9735 4.8629 19 6 1.9639 0.1489 5.4423 20 1 0.9631 0.4669 5.1903 21 6 2.7163 0.8792 6.3550 22 7 2.1680 1.8787 7.0073 23 14 4.5069 0.4391 6.6538 24 1 4.6066 -0.4525 7.8372 25 1 5.0507 -0.2587 5.4611 26 1 5.2867 1.6784 6.9006 27 1 -0.3634 0.4772 0.9102 28 1 -0.3634 0.5497 -0.8683 29 1 -0.3635 -1.0268 -0.0419 30 1 3.1532 1.4157 -0.0419 31 1 1.6758 1.9661 -0.8682 32 1 1.7438 1.9407 0.9102 33 1 2.3746 -0.0842 -2.0113 34 1 1.3201 -1.4723 -1.5924 35 1 3.6721 -2.0902 1.2466 36 1 2.1615 -2.7660 0.5687 37 1 3.2215 -2.9564 2.3556 38 1 4.5019 -4.8383 4.2376 39 1 5.0173 -5.1867 6.5993 40 1 4.3486 -3.5234 8.2816 41 1 3.1513 -1.4868 7.6150 42 1 2.6930 2.3886 7.6440 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597616558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:05 Heat of formation + Delta-G solvation = -6.373880 kcal Electronic energy + Delta-G solvation = -27123.466985 eV Core-core repulsion = 23455.467918 eV Total energy + Delta-G solvation = -3667.999066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.64084 -41.50647 -39.28581 -37.70257 -35.67875 -35.59149 -34.13355 -32.91788 -30.89428 -29.83753 -28.41122 -27.54984 -26.83625 -26.63573 -24.65684 -23.02386 -21.98006 -21.74000 -20.20451 -19.77736 -18.12298 -17.79693 -17.48948 -17.23523 -16.83324 -16.53773 -16.12814 -15.87495 -15.55565 -15.40321 -15.05253 -14.94129 -14.85263 -14.54147 -14.41897 -14.21396 -13.95951 -13.64948 -13.28241 -13.21834 -12.94480 -12.73993 -12.69854 -12.51622 -12.39535 -12.31619 -11.96396 -11.94319 -11.60655 -11.26972 -11.03786 -10.91873 -10.44456 -9.89612 -9.04433 -8.82747 -8.64262 -6.61359 -0.06247 0.88493 1.04302 1.10812 1.22905 1.31781 1.53135 1.96221 2.30331 2.63540 2.67049 2.85061 3.11608 3.48751 3.55661 3.78816 3.89423 3.99784 4.06229 4.23971 4.30479 4.33921 4.49256 4.51374 4.56266 4.59691 4.64004 4.65060 4.74122 4.79763 4.83165 4.92141 5.02360 5.08450 5.18543 5.23888 5.29412 5.40036 5.64226 5.67671 5.77194 5.81031 5.98453 6.07827 6.31136 6.39717 6.75847 7.09250 7.19027 8.28916 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015049 B = 0.005726 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.086367 B = 4888.393310 C = 6146.981069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.119 3.881 3 C -0.151 4.151 4 C 0.054 3.946 5 O -0.375 6.375 6 C 0.245 3.755 7 N -0.628 5.628 8 C 0.604 3.396 9 O -0.557 6.557 10 C -0.037 4.037 11 C -0.179 4.179 12 C -0.139 4.139 13 C -0.065 4.065 14 C -0.152 4.152 15 C -0.105 4.105 16 C -0.160 4.160 17 C 0.039 3.961 18 N -0.293 5.293 19 C -0.345 4.345 20 H 0.076 0.924 21 C 0.037 3.963 22 N -0.885 5.885 23 Si 0.936 3.064 24 H -0.221 1.221 25 H -0.271 1.271 26 H -0.283 1.283 27 H 0.033 0.967 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.031 0.969 33 H 0.131 0.869 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.190 0.810 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.146 0.854 41 H 0.099 0.901 42 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.356 -11.982 -13.958 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.035 3.965 3 C -0.209 4.209 4 C -0.022 4.022 5 O -0.291 6.291 6 C 0.086 3.914 7 N -0.369 5.369 8 C 0.395 3.605 9 O -0.436 6.436 10 C -0.151 4.151 11 C -0.206 4.206 12 C -0.143 4.143 13 C -0.084 4.084 14 C -0.171 4.171 15 C -0.125 4.125 16 C -0.180 4.180 17 C -0.074 4.074 18 N 0.042 4.958 19 C -0.473 4.473 20 H 0.093 0.907 21 C -0.170 4.170 22 N -0.518 5.518 23 Si 0.759 3.241 24 H -0.144 1.144 25 H -0.196 1.196 26 H -0.209 1.209 27 H 0.052 0.948 28 H 0.118 0.882 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.050 0.950 33 H 0.149 0.851 34 H 0.120 0.880 35 H 0.135 0.865 36 H 0.121 0.879 37 H 0.206 0.794 38 H 0.176 0.824 39 H 0.178 0.822 40 H 0.164 0.836 41 H 0.117 0.883 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.018 -10.955 -13.548 17.880 hybrid contribution -0.164 1.191 0.950 1.532 sum 3.853 -9.764 -12.598 16.398 Atomic orbital electron populations 1.22028 0.92556 1.03102 1.02895 1.22130 0.95723 0.93465 0.85171 1.22059 1.00963 0.95153 1.02738 1.24089 0.88421 0.95599 0.94111 1.89380 1.37418 1.74459 1.27828 1.24217 0.96855 0.87878 0.82446 1.49028 1.54154 1.29856 1.03909 1.16723 0.79778 0.83131 0.80865 1.90804 1.41070 1.29870 1.81824 1.20232 1.10240 1.00059 0.84617 1.21472 1.04825 0.95628 0.98648 1.18461 1.06094 0.97118 0.92668 1.20713 0.96018 0.94537 0.97093 1.20948 1.03254 1.00532 0.92374 1.21131 0.97775 0.92516 1.01047 1.20381 1.04519 1.00604 0.92457 1.19020 1.03363 0.89923 0.95048 1.40148 1.38406 1.13735 1.03530 1.19010 1.00890 1.02747 1.24616 0.90671 1.26168 1.02924 0.93876 0.94059 1.69694 1.39341 1.18968 1.23769 0.86042 0.78395 0.78084 0.81554 1.14442 1.19583 1.20940 0.94794 0.88174 0.91169 0.92788 0.88091 0.94976 0.85082 0.87974 0.86516 0.87927 0.79359 0.82416 0.82209 0.83645 0.88260 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 8.58 71.98 0.62 -3.03 16 2 C 0.12 3.11 0.95 3.87 0.00 3.12 16 3 C -0.15 -4.27 8.53 71.98 0.61 -3.66 16 4 C 0.05 0.94 6.85 72.48 0.50 1.44 16 5 O -0.37 -8.46 11.78 -148.98 -1.76 -10.22 16 6 C 0.25 5.99 6.14 127.56 0.78 6.77 16 7 N -0.63 -20.87 2.89 -885.01 -2.56 -23.43 16 8 C 0.60 27.53 7.48 86.51 0.65 28.18 16 9 O -0.56 -30.47 13.22 -4.25 -0.06 -30.52 16 10 C -0.04 -1.75 6.74 39.91 0.27 -1.49 16 11 C -0.18 -6.72 9.21 22.64 0.21 -6.51 16 12 C -0.14 -5.50 6.16 -21.34 -0.13 -5.63 16 13 C -0.07 -1.95 10.06 22.31 0.22 -1.73 16 14 C -0.15 -4.25 9.97 22.03 0.22 -4.03 16 15 C -0.10 -3.52 10.02 22.33 0.22 -3.29 16 16 C -0.16 -7.03 6.69 22.38 0.15 -6.88 16 17 C 0.04 1.87 4.82 39.06 0.19 2.06 16 18 N -0.29 -15.92 2.41 -331.35 -0.80 -16.72 16 19 C -0.34 -21.35 9.13 84.09 0.77 -20.59 16 20 H 0.08 5.28 7.37 -2.91 -0.02 5.26 16 21 C 0.04 2.19 5.28 84.95 0.45 2.64 16 22 N -0.88 -54.15 13.95 21.67 0.30 -53.85 16 23 Si 0.94 46.51 23.64 68.60 1.62 48.13 16 24 H -0.22 -9.81 5.70 99.48 0.57 -9.24 16 25 H -0.27 -14.06 6.71 99.48 0.67 -13.40 16 26 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 27 H 0.03 1.14 7.03 -2.38 -0.02 1.12 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.03 1.19 6.97 -2.39 -0.02 1.18 16 33 H 0.13 1.64 7.86 -2.38 -0.02 1.62 16 34 H 0.10 1.25 7.82 -2.39 -0.02 1.23 16 35 H 0.12 2.90 5.35 -2.39 -0.01 2.88 16 36 H 0.10 1.92 8.04 -2.39 -0.02 1.90 16 37 H 0.19 5.04 4.62 -2.91 -0.01 5.03 16 38 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 39 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 40 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 41 H 0.10 4.71 5.64 -2.91 -0.02 4.69 16 42 H 0.29 16.11 8.31 -92.70 -0.77 15.34 16 Total: -1.00 -80.97 329.74 3.35 -77.62 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.87 Total: 21.61 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 5.73 Total: -12.62 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -3.06 Total: -94.00 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -1.81 Total: -40.74 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.62 Total: 48.13 kcal Total: -80.97 3.35 -77.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597616558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.245 kcal (2) G-P(sol) polarization free energy of solvation -80.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds