Wall clock time and date at job start Tue Mar 31 2020 11:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37963 * 119.96367 * 2 1 4 4 C 1.39345 * 119.92834 * 180.25375 * 3 2 1 5 5 C 1.48422 * 120.06361 * 179.72289 * 4 3 2 6 6 C 1.41173 * 126.19498 * 0.04622 * 5 4 3 7 7 N 1.30733 * 108.28418 * 179.97438 * 6 5 4 8 8 N 1.40025 * 108.59668 * 359.97438 * 7 6 5 9 9 C 1.37298 * 125.97354 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00701 * 179.97438 * 9 8 7 11 11 C 1.39003 * 119.99516 * 359.97438 * 9 8 7 12 12 N 1.31282 * 120.00123 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99751 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46999 * 60.00381 * 13 11 9 15 15 H 1.48500 * 109.47268 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47427 * 300.00467 * 13 11 9 17 17 C 1.36129 * 108.05705 * 359.77207 * 8 7 6 18 18 C 1.39387 * 119.87165 * 359.74869 * 4 3 2 19 19 C 1.37907 * 119.93382 * 359.97438 * 18 4 3 20 20 C 1.38786 * 119.97365 * 179.74597 * 2 1 3 21 21 O 1.35911 * 119.92749 * 0.02562 * 20 2 1 22 22 C 1.42901 * 116.99781 * 185.30433 * 21 20 2 23 23 H 1.08998 * 111.02029 * 32.10992 * 22 21 20 24 24 C 1.55303 * 111.12470 * 156.33759 * 22 21 20 25 25 C 1.54387 * 102.25482 * 152.05326 * 24 22 21 26 26 O 1.43239 * 107.58598 * 338.63710 * 25 24 22 27 27 C 1.43651 * 109.97228 * 358.29412 * 26 25 24 28 28 H 1.08998 * 109.46931 * 270.25206 * 1 2 3 29 29 H 1.08995 * 109.47495 * 30.25523 * 1 2 3 30 30 H 1.09001 * 109.46623 * 150.25897 * 1 2 3 31 31 H 1.08001 * 120.03220 * 0.02562 * 3 2 1 32 32 H 1.07997 * 125.86059 * 359.97438 * 6 5 4 33 33 H 0.96999 * 119.99960 * 180.02562 * 12 11 9 34 34 H 1.08007 * 126.26901 * 180.22094 * 17 8 7 35 35 H 1.08001 * 120.03345 * 180.02562 * 18 4 3 36 36 H 1.07998 * 119.96726 * 179.97438 * 19 18 4 37 37 H 1.08999 * 110.85157 * 33.85964 * 24 22 21 38 38 H 1.09001 * 110.84539 * 270.24009 * 24 22 21 39 39 H 1.08997 * 109.83250 * 98.15014 * 25 24 22 40 40 H 1.08996 * 109.83117 * 219.13085 * 25 24 22 41 41 H 1.08996 * 110.30697 * 143.34307 * 27 26 25 42 42 H 1.09002 * 110.30453 * 265.50962 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1952 0.0000 4 6 3.5895 1.1944 -0.0053 5 6 4.3338 2.4785 -0.0116 6 6 3.7662 3.7711 -0.0119 7 7 4.7379 4.6457 -0.0177 8 7 5.9576 3.9580 -0.0207 9 6 7.2059 4.5299 -0.0263 10 1 8.0864 3.9046 -0.0279 11 6 7.3362 5.9138 -0.0301 12 7 6.2659 6.6739 -0.0277 13 14 9.0344 6.6918 -0.0370 14 1 9.7724 6.2587 -1.2508 15 1 8.9013 8.1709 -0.0409 16 1 9.7798 6.2645 1.1742 17 6 5.6896 2.6234 -0.0114 18 6 4.2830 -0.0147 -0.0054 19 6 3.5887 -1.2063 0.0004 20 6 2.2004 -1.2022 0.0053 21 8 1.5188 -2.3781 0.0100 22 6 2.2903 -3.5746 0.1331 23 1 3.1800 -3.4055 0.7396 24 6 1.4340 -4.7362 0.7070 25 6 2.1229 -5.9797 0.1048 26 8 2.8567 -5.5519 -1.0486 27 6 2.6633 -4.1441 -1.2589 28 1 -0.3633 0.0045 1.0276 29 1 -0.3634 0.8876 -0.5178 30 1 -0.3632 -0.8923 -0.5098 31 1 1.6560 2.1305 0.0004 32 1 2.7105 3.9985 -0.0080 33 1 6.3569 7.6396 -0.0307 34 1 6.4176 1.8255 -0.0076 35 1 5.3630 -0.0184 -0.0091 36 1 4.1255 -2.1434 0.0000 37 1 0.4012 -4.6618 0.3665 38 1 1.4843 -4.7540 1.7957 39 1 2.8039 -6.4155 0.8357 40 1 1.3718 -6.7139 -0.1864 41 1 3.5836 -3.6858 -1.6210 42 1 1.8517 -3.9754 -1.9666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600779023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:51 Heat of formation + Delta-G solvation = 16.493775 kcal Electronic energy + Delta-G solvation = -24878.780038 eV Core-core repulsion = 21211.772588 eV Total energy + Delta-G solvation = -3667.007450 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.49869 -39.65197 -38.87499 -36.88899 -33.73709 -32.72880 -31.74683 -30.93686 -29.98239 -29.20163 -27.68300 -26.22129 -25.03511 -23.30488 -22.67131 -21.55442 -21.13876 -20.10294 -18.90588 -18.19754 -17.51312 -16.86607 -16.15785 -15.58276 -15.54075 -15.27744 -14.82738 -14.48245 -14.23226 -13.79451 -13.70784 -13.42441 -13.11963 -13.04052 -12.94069 -12.74603 -12.47107 -12.17396 -11.92483 -11.82415 -11.71621 -11.51485 -11.28524 -11.21155 -11.10509 -10.89961 -10.74948 -10.55807 -10.28636 -9.87493 -9.56362 -8.86762 -8.53742 -8.31836 -8.14032 -6.71002 -6.67224 -4.35723 1.72886 1.74182 2.92196 2.99575 3.00075 3.03184 3.49118 3.70960 3.75536 3.89630 4.07651 4.49181 4.55888 4.60613 4.67532 4.75082 4.87258 4.94271 5.07421 5.14436 5.31559 5.34758 5.37893 5.46999 5.54761 5.58754 5.70983 5.83168 5.84116 5.93027 5.96028 6.14645 6.20266 6.31795 6.57167 6.61283 6.69041 6.76459 6.85496 6.99354 7.09566 7.23633 7.55949 7.67579 7.74318 8.06130 8.55750 9.25506 9.51036 10.28657 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.026306 B = 0.002506 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.130869 B =11168.448555 C =12061.433508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.101 4.101 3 C -0.106 4.106 4 C 0.032 3.968 5 C -0.251 4.251 6 C -0.017 4.017 7 N -0.263 5.263 8 N -0.143 5.143 9 C -0.327 4.327 10 H 0.118 0.882 11 C 0.048 3.952 12 N -0.769 5.769 13 Si 0.935 3.065 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.266 1.266 17 C -0.042 4.042 18 C -0.110 4.110 19 C -0.189 4.189 20 C 0.076 3.924 21 O -0.300 6.300 22 C 0.052 3.948 23 H 0.093 0.907 24 C -0.152 4.152 25 C 0.052 3.948 26 O -0.379 6.379 27 C 0.031 3.969 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.154 0.846 33 H 0.277 0.723 34 H 0.147 0.853 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.368 -17.523 1.080 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.102 4.102 3 C -0.124 4.124 4 C 0.030 3.970 5 C -0.265 4.265 6 C -0.194 4.194 7 N -0.090 5.090 8 N 0.094 4.906 9 C -0.459 4.459 10 H 0.135 0.865 11 C -0.170 4.170 12 N -0.395 5.395 13 Si 0.759 3.241 14 H -0.190 1.190 15 H -0.200 1.200 16 H -0.190 1.190 17 C -0.194 4.194 18 C -0.129 4.129 19 C -0.208 4.208 20 C 0.033 3.967 21 O -0.215 6.215 22 C -0.005 4.005 23 H 0.110 0.890 24 C -0.189 4.189 25 C -0.024 4.024 26 O -0.298 6.298 27 C -0.046 4.046 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.171 0.829 33 H 0.087 0.913 34 H 0.164 0.836 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.178 -16.101 0.931 17.653 hybrid contribution 0.718 -0.435 0.175 0.857 sum -6.460 -16.535 1.105 17.787 Atomic orbital electron populations 1.20565 0.91228 1.02227 1.01779 1.19045 0.95802 0.90161 1.05179 1.20805 0.93448 0.96357 1.01818 1.18197 0.91922 0.91644 0.95234 1.18202 0.91821 0.91598 1.24844 1.23665 0.98532 0.90831 1.06411 1.78105 0.87696 1.18182 1.25035 1.44806 1.05438 1.02424 1.37952 1.19922 0.81055 0.91493 1.53416 0.86462 1.25667 0.99825 0.96333 0.95167 1.70185 1.28803 1.05711 1.34840 0.85876 0.80277 0.78325 0.79629 1.19031 1.20047 1.19033 1.21982 0.95664 0.87061 1.14691 1.20857 0.99538 0.91010 1.01481 1.21004 0.92665 0.98770 1.08365 1.18580 0.90277 0.84702 1.03183 1.86025 1.34782 1.11764 1.88901 1.23985 0.95382 0.84469 0.96710 0.88953 1.23150 1.01001 0.92730 1.02060 1.23093 0.95325 0.96135 0.87882 1.88445 1.71069 1.23262 1.47072 1.23896 1.02623 0.81102 0.96984 0.91872 0.91878 0.91729 0.85691 0.82871 0.91279 0.83601 0.86253 0.86355 0.89178 0.89110 0.90816 0.90869 0.88920 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 9.78 36.01 0.35 -0.90 16 2 C -0.10 -1.55 5.89 -104.52 -0.62 -2.16 16 3 C -0.11 -1.79 9.23 -39.27 -0.36 -2.16 16 4 C 0.03 0.61 5.88 -104.86 -0.62 -0.01 16 5 C -0.25 -5.61 6.04 -105.27 -0.64 -6.25 16 6 C -0.02 -0.40 11.42 -16.91 -0.19 -0.60 16 7 N -0.26 -7.26 10.36 30.88 0.32 -6.94 16 8 N -0.14 -3.82 3.72 -11.34 -0.04 -3.86 16 9 C -0.33 -8.48 10.24 -14.82 -0.15 -8.63 16 10 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 11 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 12 N -0.77 -20.85 11.80 55.50 0.66 -20.19 16 13 Si 0.94 18.49 29.55 -169.99 -5.02 13.47 16 14 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 15 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 16 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 17 C -0.04 -0.99 10.84 -16.32 -0.18 -1.17 16 18 C -0.11 -1.85 9.56 -39.28 -0.38 -2.22 16 19 C -0.19 -2.79 8.94 -39.48 -0.35 -3.14 16 20 C 0.08 1.13 6.65 -39.16 -0.26 0.87 16 21 O -0.30 -3.90 8.99 -19.46 -0.17 -4.08 16 22 C 0.05 0.54 2.85 -24.48 -0.07 0.47 16 23 H 0.09 0.94 6.22 -51.93 -0.32 0.62 16 24 C -0.15 -1.21 6.76 -24.78 -0.17 -1.38 16 25 C 0.05 0.41 7.79 37.88 0.30 0.70 16 26 O -0.38 -4.15 11.36 -35.23 -0.40 -4.55 16 27 C 0.03 0.32 7.43 38.19 0.28 0.61 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.06 0.77 7.52 -51.93 -0.39 0.38 16 31 H 0.13 1.99 7.04 -52.49 -0.37 1.63 16 32 H 0.15 3.14 7.34 -52.49 -0.39 2.76 16 33 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.15 2.94 7.28 -52.48 -0.38 2.56 16 35 H 0.12 1.88 7.01 -52.49 -0.37 1.52 16 36 H 0.12 1.45 5.68 -52.49 -0.30 1.15 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.95 7.84 -51.93 -0.41 0.54 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -30.68 350.91 -7.95 -38.62 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.43 Total: 7.09 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -3.14 Total: -24.85 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.93 Total: -30.99 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.58 Total: -8.62 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.68 -7.95 -38.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600779023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.117 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds