Wall clock time and date at job start Tue Mar 31 2020 11:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37963 * 119.96367 * 2 1 4 4 C 1.39345 * 119.92834 * 180.25375 * 3 2 1 5 5 C 1.48422 * 120.06361 * 179.72289 * 4 3 2 6 6 C 1.41173 * 126.19498 * 0.04622 * 5 4 3 7 7 N 1.30733 * 108.28418 * 179.97438 * 6 5 4 8 8 N 1.40025 * 108.59668 * 359.97438 * 7 6 5 9 9 C 1.37298 * 125.97354 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00701 * 179.97438 * 9 8 7 11 11 C 1.39003 * 119.99516 * 359.97438 * 9 8 7 12 12 N 1.31282 * 120.00123 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99751 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46999 * 60.00381 * 13 11 9 15 15 H 1.48500 * 109.47268 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47427 * 300.00467 * 13 11 9 17 17 C 1.36129 * 108.05705 * 359.77207 * 8 7 6 18 18 C 1.39387 * 119.87165 * 359.74869 * 4 3 2 19 19 C 1.37907 * 119.93382 * 359.97438 * 18 4 3 20 20 C 1.38786 * 119.97365 * 179.74597 * 2 1 3 21 21 O 1.35911 * 119.92749 * 0.02562 * 20 2 1 22 22 C 1.42901 * 116.99781 * 185.30433 * 21 20 2 23 23 H 1.08998 * 111.02029 * 32.10992 * 22 21 20 24 24 C 1.55303 * 111.12470 * 156.33759 * 22 21 20 25 25 C 1.54387 * 102.25482 * 152.05326 * 24 22 21 26 26 O 1.43239 * 107.58598 * 338.63710 * 25 24 22 27 27 C 1.43651 * 109.97228 * 358.29412 * 26 25 24 28 28 H 1.08998 * 109.46931 * 270.25206 * 1 2 3 29 29 H 1.08995 * 109.47495 * 30.25523 * 1 2 3 30 30 H 1.09001 * 109.46623 * 150.25897 * 1 2 3 31 31 H 1.08001 * 120.03220 * 0.02562 * 3 2 1 32 32 H 1.07997 * 125.86059 * 359.97438 * 6 5 4 33 33 H 0.96999 * 119.99960 * 180.02562 * 12 11 9 34 34 H 1.08007 * 126.26901 * 180.22094 * 17 8 7 35 35 H 1.08001 * 120.03345 * 180.02562 * 18 4 3 36 36 H 1.07998 * 119.96726 * 179.97438 * 19 18 4 37 37 H 1.08999 * 110.85157 * 33.85964 * 24 22 21 38 38 H 1.09001 * 110.84539 * 270.24009 * 24 22 21 39 39 H 1.08997 * 109.83250 * 98.15014 * 25 24 22 40 40 H 1.08996 * 109.83117 * 219.13085 * 25 24 22 41 41 H 1.08996 * 110.30697 * 143.34307 * 27 26 25 42 42 H 1.09002 * 110.30453 * 265.50962 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1952 0.0000 4 6 3.5895 1.1944 -0.0053 5 6 4.3338 2.4785 -0.0116 6 6 3.7662 3.7711 -0.0119 7 7 4.7379 4.6457 -0.0177 8 7 5.9576 3.9580 -0.0207 9 6 7.2059 4.5299 -0.0263 10 1 8.0864 3.9046 -0.0279 11 6 7.3362 5.9138 -0.0301 12 7 6.2659 6.6739 -0.0277 13 14 9.0344 6.6918 -0.0370 14 1 9.7724 6.2587 -1.2508 15 1 8.9013 8.1709 -0.0409 16 1 9.7798 6.2645 1.1742 17 6 5.6896 2.6234 -0.0114 18 6 4.2830 -0.0147 -0.0054 19 6 3.5887 -1.2063 0.0004 20 6 2.2004 -1.2022 0.0053 21 8 1.5188 -2.3781 0.0100 22 6 2.2903 -3.5746 0.1331 23 1 3.1800 -3.4055 0.7396 24 6 1.4340 -4.7362 0.7070 25 6 2.1229 -5.9797 0.1048 26 8 2.8567 -5.5519 -1.0486 27 6 2.6633 -4.1441 -1.2589 28 1 -0.3633 0.0045 1.0276 29 1 -0.3634 0.8876 -0.5178 30 1 -0.3632 -0.8923 -0.5098 31 1 1.6560 2.1305 0.0004 32 1 2.7105 3.9985 -0.0080 33 1 6.3569 7.6396 -0.0307 34 1 6.4176 1.8255 -0.0076 35 1 5.3630 -0.0184 -0.0091 36 1 4.1255 -2.1434 0.0000 37 1 0.4012 -4.6618 0.3665 38 1 1.4843 -4.7540 1.7957 39 1 2.8039 -6.4155 0.8357 40 1 1.3718 -6.7139 -0.1864 41 1 3.5836 -3.6858 -1.6210 42 1 1.8517 -3.9754 -1.9666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600779023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:46 Heat of formation + Delta-G solvation = -0.696524 kcal Electronic energy + Delta-G solvation = -24879.525466 eV Core-core repulsion = 21211.772588 eV Total energy + Delta-G solvation = -3667.752878 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 3.41 seconds Orbital eigenvalues (eV) -41.64471 -41.24973 -39.90814 -38.03252 -35.52654 -33.94230 -32.77760 -32.41273 -31.58014 -29.97656 -29.21821 -27.44572 -26.81670 -24.37841 -23.45992 -22.96834 -22.44739 -21.55742 -20.49941 -19.28235 -19.20573 -17.68073 -17.53772 -17.03179 -16.53794 -16.32967 -16.15903 -15.65939 -15.39436 -15.27390 -15.06635 -14.77384 -14.57471 -14.12631 -14.00760 -13.85485 -13.60100 -13.36699 -13.29640 -13.02295 -12.98980 -12.84426 -12.71322 -12.55670 -12.35776 -12.10250 -12.00095 -11.73829 -11.46632 -11.27708 -10.71857 -10.59332 -10.19154 -9.86709 -9.57938 -8.50946 -8.29343 -6.28628 0.38103 0.48765 1.33669 1.37873 1.53484 1.79462 2.04965 2.11449 2.28935 2.80425 2.96356 3.02952 3.19605 3.35034 3.74650 3.78067 3.93322 3.95907 4.09287 4.12619 4.21696 4.37817 4.41476 4.51852 4.60557 4.62145 4.67633 4.75154 4.83104 4.87886 4.90095 4.90387 4.95779 5.04093 5.05737 5.17573 5.36988 5.42240 5.47248 5.63250 5.85191 5.90157 5.96213 6.01850 6.26054 6.52088 6.72374 7.42009 7.64125 8.48201 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.026306 B = 0.002506 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.130869 B =11168.448555 C =12061.433508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.110 4.110 3 C -0.106 4.106 4 C -0.004 4.004 5 C -0.239 4.239 6 C -0.034 4.034 7 N -0.312 5.312 8 N -0.172 5.172 9 C -0.363 4.363 10 H 0.135 0.865 11 C -0.003 4.003 12 N -0.822 5.822 13 Si 1.016 2.984 14 H -0.255 1.255 15 H -0.275 1.275 16 H -0.255 1.255 17 C -0.051 4.051 18 C -0.110 4.110 19 C -0.188 4.188 20 C 0.090 3.910 21 O -0.300 6.300 22 C 0.043 3.957 23 H 0.098 0.902 24 C -0.144 4.144 25 C 0.047 3.953 26 O -0.398 6.398 27 C 0.032 3.968 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.176 0.824 33 H 0.278 0.722 34 H 0.173 0.827 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 -20.306 1.469 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.125 4.125 4 C -0.006 4.006 5 C -0.252 4.252 6 C -0.211 4.211 7 N -0.140 5.140 8 N 0.062 4.938 9 C -0.493 4.493 10 H 0.152 0.848 11 C -0.215 4.215 12 N -0.449 5.449 13 Si 0.835 3.165 14 H -0.179 1.179 15 H -0.200 1.200 16 H -0.179 1.179 17 C -0.201 4.201 18 C -0.129 4.129 19 C -0.206 4.206 20 C 0.045 3.955 21 O -0.215 6.215 22 C -0.014 4.014 23 H 0.116 0.884 24 C -0.182 4.182 25 C -0.028 4.028 26 O -0.318 6.318 27 C -0.045 4.045 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.147 0.853 32 H 0.193 0.807 33 H 0.087 0.913 34 H 0.190 0.810 35 H 0.144 0.856 36 H 0.163 0.837 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.413 -18.938 1.322 20.380 hybrid contribution 0.558 0.051 0.056 0.563 sum -6.856 -18.887 1.378 20.140 Atomic orbital electron populations 1.20600 0.89096 1.03063 1.02735 1.19338 0.97436 0.89732 1.04609 1.20914 0.92853 0.97437 1.01256 1.18190 0.92759 0.90847 0.98821 1.18574 0.91648 0.92602 1.22398 1.24108 0.99184 0.91350 1.06480 1.77977 0.88878 1.20332 1.26836 1.45035 1.05437 1.03334 1.39967 1.20548 0.81622 0.92605 1.54554 0.84756 1.26823 1.04196 0.96484 0.93966 1.70349 1.31541 1.05928 1.37093 0.84691 0.74661 0.76933 0.80197 1.17907 1.19952 1.17866 1.22602 0.96961 0.86868 1.13701 1.20992 1.00075 0.90995 1.00811 1.21222 0.92845 0.99069 1.07486 1.18745 0.90430 0.85463 1.00849 1.86042 1.35174 1.11854 1.88392 1.24239 0.96093 0.83955 0.97088 0.88408 1.23174 1.00637 0.91352 1.03013 1.23308 0.95887 0.96306 0.87340 1.88428 1.71771 1.23235 1.48402 1.23850 1.02488 0.81242 0.96920 0.90760 0.90969 0.91014 0.85349 0.80698 0.91264 0.80988 0.85585 0.83731 0.88926 0.87440 0.89338 0.89453 0.89002 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.18 9.78 71.24 0.70 -1.49 16 2 C -0.11 -3.15 5.89 -19.80 -0.12 -3.26 16 3 C -0.11 -3.50 9.23 22.47 0.21 -3.29 16 4 C 0.00 -0.17 5.88 -20.02 -0.12 -0.28 16 5 C -0.24 -10.82 6.04 -20.28 -0.12 -10.95 16 6 C -0.03 -1.69 11.42 85.58 0.98 -0.72 16 7 N -0.31 -18.00 10.36 -56.21 -0.58 -18.58 16 8 N -0.17 -9.56 3.72 -189.79 -0.71 -10.26 16 9 C -0.36 -19.38 10.24 84.02 0.86 -18.51 16 10 H 0.14 6.33 7.83 -2.91 -0.02 6.31 16 11 C 0.00 -0.14 5.50 84.96 0.47 0.33 16 12 N -0.82 -46.54 11.80 21.66 0.26 -46.29 16 13 Si 1.02 38.49 29.55 68.60 2.03 40.52 16 14 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 15 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 16 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 17 C -0.05 -2.43 10.84 83.59 0.91 -1.52 16 18 C -0.11 -3.54 9.56 22.47 0.21 -3.32 16 19 C -0.19 -5.05 8.94 22.33 0.20 -4.85 16 20 C 0.09 2.43 6.65 22.54 0.15 2.58 16 21 O -0.30 -6.88 8.99 -92.55 -0.83 -7.72 16 22 C 0.04 0.77 2.85 32.05 0.09 0.86 16 23 H 0.10 1.65 6.22 -2.39 -0.01 1.64 16 24 C -0.14 -1.81 6.76 31.86 0.22 -1.60 16 25 C 0.05 0.59 7.79 72.45 0.56 1.16 16 26 O -0.40 -7.75 11.36 -148.98 -1.69 -9.44 16 27 C 0.03 0.59 7.43 72.65 0.54 1.13 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 30 H 0.07 1.49 7.52 -2.39 -0.02 1.47 16 31 H 0.13 4.03 7.04 -2.91 -0.02 4.01 16 32 H 0.18 7.40 7.34 -2.91 -0.02 7.38 16 33 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 34 H 0.17 6.93 7.28 -2.91 -0.02 6.90 16 35 H 0.13 3.79 7.01 -2.91 -0.02 3.77 16 36 H 0.15 3.08 5.68 -2.91 -0.02 3.06 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.09 1.68 7.84 -2.39 -0.02 1.67 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -69.09 350.91 5.24 -63.85 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 1.04 Total: 31.66 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 5.73 Total: -43.74 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -1.03 Total: -75.13 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -2.52 Total: -17.16 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -69.09 5.24 -63.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600779023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.153 kcal (2) G-P(sol) polarization free energy of solvation -69.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.41 seconds