Wall clock time and date at job start Tue Mar 31 2020 11:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30175 * 126.80632 * 2 1 4 4 O 1.20917 * 111.60831 * 180.02562 * 3 2 1 5 5 C 1.34044 * 111.56318 * 359.76715 * 4 3 2 6 6 C 1.50703 * 126.77342 * 180.28834 * 5 4 3 7 7 C 1.35448 * 106.45122 * 0.37483 * 5 4 3 8 8 C 1.50695 * 128.01180 * 179.91047 * 7 5 4 9 9 C 1.53000 * 109.47392 * 269.68596 * 8 7 5 10 10 N 1.46497 * 109.47087 * 179.97438 * 9 8 7 11 11 C 1.34774 * 120.00234 * 179.97438 * 10 9 8 12 12 O 1.21618 * 119.99610 * 359.97438 * 11 10 9 13 13 C 1.47428 * 120.00477 * 180.02562 * 11 10 9 14 14 C 1.39232 * 120.28208 * 357.04743 * 13 11 10 15 15 C 1.38217 * 120.09197 * 180.28466 * 14 13 11 16 16 C 1.38826 * 120.68006 * 359.71249 * 15 14 13 17 17 C 1.37600 * 120.56680 * 359.97438 * 16 15 14 18 18 C 1.40709 * 119.88058 * 0.02562 * 17 16 15 19 19 C 1.40892 * 120.32698 * 180.02562 * 18 17 16 20 20 H 1.07993 * 120.00405 * 145.84398 * 19 18 17 21 21 C 1.40277 * 119.99993 * 325.84525 * 19 18 17 22 22 N 1.30635 * 119.99643 * 340.94173 * 21 19 18 23 23 Si 1.86791 * 120.00406 * 160.94462 * 21 19 18 24 24 H 1.48498 * 109.47690 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47328 * 300.00333 * 23 21 19 26 26 H 1.48504 * 109.47177 * 59.99546 * 23 21 19 27 27 H 1.08993 * 109.46857 * 269.97690 * 1 2 3 28 28 H 1.09007 * 109.46507 * 29.97419 * 1 2 3 29 29 H 1.09003 * 109.47138 * 149.97019 * 1 2 3 30 30 H 1.08993 * 109.47124 * 270.10381 * 6 5 4 31 31 H 1.09004 * 109.47144 * 30.11094 * 6 5 4 32 32 H 1.09001 * 109.47041 * 150.10808 * 6 5 4 33 33 H 1.09000 * 109.47218 * 149.67775 * 8 7 5 34 34 H 1.09002 * 109.46638 * 29.68803 * 8 7 5 35 35 H 1.08997 * 109.47147 * 59.99621 * 9 8 7 36 36 H 1.09003 * 109.46728 * 299.99411 * 9 8 7 37 37 H 0.97004 * 120.00040 * 0.02562 * 10 9 8 38 38 H 1.07997 * 119.94959 * 359.97438 * 14 13 11 39 39 H 1.07997 * 119.66279 * 179.73914 * 15 14 13 40 40 H 1.07994 * 119.72040 * 180.02562 * 16 15 14 41 41 H 1.07999 * 120.05892 * 180.02562 * 17 16 15 42 42 H 0.96993 * 120.00043 * 354.76364 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6024 -0.6069 0.0042 6 6 4.9021 -1.3697 0.0112 7 6 2.3539 -1.1322 -0.0006 8 6 1.9590 -2.5864 -0.0003 9 6 1.8241 -3.0787 -1.4426 10 7 1.4407 -4.4926 -1.4421 11 6 1.2627 -5.1430 -2.6091 12 8 1.4199 -4.5559 -3.6625 13 6 0.8764 -6.5658 -2.6087 14 6 0.7536 -7.2596 -1.4078 15 6 0.3969 -8.5949 -1.4123 16 6 0.1514 -9.2585 -2.6067 17 6 0.2584 -8.5979 -3.8090 18 6 0.6201 -7.2383 -3.8321 19 6 0.7319 -6.5526 -5.0578 20 1 0.4628 -5.5085 -5.1190 21 6 1.1929 -7.2261 -6.1987 22 7 1.8594 -8.3426 -6.0734 23 14 0.8538 -6.5264 -7.8971 24 1 1.4413 -7.4202 -8.9272 25 1 -0.6129 -6.4265 -8.1076 26 1 1.4626 -5.1764 -8.0070 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3632 0.8903 -0.5135 29 1 -0.3633 -0.8897 -0.5143 30 1 5.2201 -1.5551 -1.0147 31 1 5.6636 -0.7852 0.5277 32 1 4.7627 -2.3204 0.5258 33 1 1.0054 -2.7038 0.5145 34 1 2.7231 -3.1702 0.5130 35 1 2.7777 -2.9614 -1.9572 36 1 1.0599 -2.4949 -1.9558 37 1 1.3143 -4.9606 -0.6019 38 1 0.9422 -6.7549 -0.4718 39 1 0.3077 -9.1275 -0.4770 40 1 -0.1267 -10.3019 -2.5922 41 1 0.0652 -9.1221 -4.7333 42 1 2.1014 -8.6666 -5.1918 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601120318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:20 Heat of formation + Delta-G solvation = 23.580190 kcal Electronic energy + Delta-G solvation = -25171.097689 eV Core-core repulsion = 21504.397529 eV Total energy + Delta-G solvation = -3666.700160 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -45.05690 -39.09041 -37.21083 -36.13367 -34.35450 -33.95237 -33.44487 -30.77495 -29.70201 -29.22044 -28.79768 -27.50496 -25.35196 -24.00209 -22.14615 -21.45347 -20.87448 -20.29938 -19.48394 -18.12039 -17.78767 -17.05685 -16.38588 -15.46483 -15.32610 -14.76518 -14.44878 -14.13325 -14.05077 -13.89762 -13.66974 -13.63516 -13.32797 -13.12386 -12.97211 -12.77154 -12.56851 -12.36471 -12.32552 -12.00493 -11.86230 -11.48436 -11.14889 -10.99727 -10.89785 -10.77296 -10.37823 -10.19352 -9.97008 -9.64682 -9.28062 -9.09972 -8.55049 -8.45620 -7.82190 -7.63454 -7.16936 -4.49036 1.30368 2.03067 2.21005 2.71234 2.94596 3.19508 3.29627 3.39919 3.81124 4.02023 4.04399 4.07617 4.27537 4.58827 4.62167 4.86273 4.99617 5.06397 5.17379 5.20220 5.29857 5.36807 5.42460 5.47676 5.50603 5.58086 5.77809 5.82071 5.87236 6.00712 6.03269 6.09446 6.19132 6.47928 6.68737 6.95793 7.04045 7.24945 7.46150 7.57875 7.69279 7.86159 8.06056 8.14127 8.18459 8.32647 8.70375 8.83352 9.31874 10.02012 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014914 B = 0.003208 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.945593 B = 8725.339201 C = 9667.092172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.026 3.974 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.026 4.026 6 C -0.075 4.075 7 C -0.195 4.195 8 C -0.051 4.051 9 C 0.132 3.868 10 N -0.750 5.750 11 C 0.563 3.437 12 O -0.536 6.536 13 C -0.266 4.266 14 C -0.043 4.043 15 C -0.260 4.260 16 C -0.076 4.076 17 C -0.201 4.201 18 C 0.121 3.879 19 C -0.466 4.466 20 H 0.105 0.895 21 C 0.031 3.969 22 N -0.793 5.793 23 Si 1.070 2.930 24 H -0.274 1.274 25 H -0.274 1.274 26 H -0.273 1.273 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.391 0.609 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.978 9.505 12.099 15.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.133 4.133 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.090 4.090 6 C -0.133 4.133 7 C -0.199 4.199 8 C -0.090 4.090 9 C 0.008 3.992 10 N -0.405 5.405 11 C 0.357 3.643 12 O -0.415 6.415 13 C -0.271 4.271 14 C -0.062 4.062 15 C -0.279 4.279 16 C -0.095 4.095 17 C -0.220 4.220 18 C 0.116 3.884 19 C -0.493 4.493 20 H 0.123 0.877 21 C -0.190 4.190 22 N -0.416 5.416 23 Si 0.893 3.107 24 H -0.199 1.199 25 H -0.199 1.199 26 H -0.198 1.198 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.226 0.774 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.122 10.927 9.685 14.755 hybrid contribution -0.300 -0.794 2.300 2.451 sum 1.822 10.133 11.985 15.800 Atomic orbital electron populations 1.20199 0.85930 1.04131 1.03289 1.23472 0.98965 0.88435 1.02387 1.73825 0.89296 1.23965 1.20495 1.84790 1.21644 1.22521 1.68000 1.24283 0.98291 0.83780 1.02638 1.20377 0.89904 0.98517 1.04485 1.20751 0.91659 0.97122 1.10378 1.20071 1.02740 0.88528 0.97616 1.21034 1.00751 0.82788 0.94662 1.45995 1.74673 1.10619 1.09259 1.18377 0.76317 0.87176 0.82393 1.90689 1.51480 1.68714 1.30570 1.19380 1.20013 0.93448 0.94289 1.20705 0.96087 0.94245 0.95157 1.20242 1.16096 0.95138 0.96452 1.20746 0.97983 0.97611 0.93121 1.21264 1.08058 0.96065 0.96610 1.17496 0.87843 0.90954 0.92071 1.21194 1.34165 1.01010 0.92927 0.87689 1.27270 0.92502 0.93309 1.05948 1.70391 1.23199 1.17156 1.30884 0.83566 0.77672 0.76590 0.72890 1.19901 1.19933 1.19785 0.90198 0.90490 0.89698 0.89071 0.89880 0.88936 0.89907 0.89973 0.92079 0.92100 0.77434 0.89111 0.88897 0.88874 0.87520 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.39 36.01 0.37 -0.37 16 2 C 0.03 0.32 7.33 -82.10 -0.60 -0.28 16 3 N -0.37 -5.03 12.07 33.43 0.40 -4.62 16 4 O 0.09 1.19 11.20 17.17 0.19 1.38 16 5 C -0.03 -0.28 7.49 -35.30 -0.26 -0.55 16 6 C -0.08 -0.54 10.30 36.01 0.37 -0.17 16 7 C -0.19 -2.20 5.58 -104.42 -0.58 -2.78 16 8 C -0.05 -0.53 5.66 -27.89 -0.16 -0.69 16 9 C 0.13 1.88 5.66 -4.04 -0.02 1.86 16 10 N -0.75 -12.42 5.51 -61.38 -0.34 -12.76 16 11 C 0.56 12.68 7.73 -12.52 -0.10 12.58 16 12 O -0.54 -14.00 13.55 5.26 0.07 -13.93 16 13 C -0.27 -6.31 5.92 -104.37 -0.62 -6.93 16 14 C -0.04 -0.87 9.53 -39.22 -0.37 -1.25 16 15 C -0.26 -5.28 10.03 -39.37 -0.39 -5.68 16 16 C -0.08 -1.64 10.01 -39.60 -0.40 -2.04 16 17 C -0.20 -4.93 7.86 -38.88 -0.31 -5.23 16 18 C 0.12 3.17 5.18 -106.54 -0.55 2.62 16 19 C -0.47 -12.70 7.66 -37.81 -0.29 -12.99 16 20 H 0.11 2.99 5.91 -52.49 -0.31 2.68 16 21 C 0.03 0.81 5.04 -17.29 -0.09 0.72 16 22 N -0.79 -21.06 12.57 55.56 0.70 -20.36 16 23 Si 1.07 22.42 29.98 -169.99 -5.10 17.32 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.56 7.44 -51.93 -0.39 0.17 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.71 7.44 -51.93 -0.39 0.32 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.39 5.39 6.51 -40.82 -0.27 5.12 16 38 H 0.09 1.48 6.41 -52.49 -0.34 1.14 16 39 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.11 2.68 6.93 -52.49 -0.36 2.31 16 42 H 0.30 8.08 6.54 -40.82 -0.27 7.82 16 LS Contribution 355.97 15.07 5.36 5.36 Total: -1.00 -31.65 355.97 -8.04 -39.69 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.34 Total: 9.08 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -4.00 Total: -21.16 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.76 Total: -37.74 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.26 Total: -12.55 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.10 Total: 17.32 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.65 -8.04 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601120318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.270 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds