Wall clock time and date at job start Tue Mar 31 2020 11:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30175 * 126.80632 * 2 1 4 4 O 1.20917 * 111.60831 * 180.02562 * 3 2 1 5 5 C 1.34044 * 111.56318 * 359.76715 * 4 3 2 6 6 C 1.50703 * 126.77342 * 180.28834 * 5 4 3 7 7 C 1.35448 * 106.45122 * 0.37483 * 5 4 3 8 8 C 1.50695 * 128.01180 * 179.91047 * 7 5 4 9 9 C 1.53000 * 109.47392 * 269.68596 * 8 7 5 10 10 N 1.46497 * 109.47087 * 179.97438 * 9 8 7 11 11 C 1.34774 * 120.00234 * 179.97438 * 10 9 8 12 12 O 1.21618 * 119.99610 * 359.97438 * 11 10 9 13 13 C 1.47428 * 120.00477 * 180.02562 * 11 10 9 14 14 C 1.39232 * 120.28208 * 357.04743 * 13 11 10 15 15 C 1.38217 * 120.09197 * 180.28466 * 14 13 11 16 16 C 1.38826 * 120.68006 * 359.71249 * 15 14 13 17 17 C 1.37600 * 120.56680 * 359.97438 * 16 15 14 18 18 C 1.40709 * 119.88058 * 0.02562 * 17 16 15 19 19 C 1.40892 * 120.32698 * 180.02562 * 18 17 16 20 20 H 1.07993 * 120.00405 * 145.84398 * 19 18 17 21 21 C 1.40277 * 119.99993 * 325.84525 * 19 18 17 22 22 N 1.30635 * 119.99643 * 340.94173 * 21 19 18 23 23 Si 1.86791 * 120.00406 * 160.94462 * 21 19 18 24 24 H 1.48498 * 109.47690 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47328 * 300.00333 * 23 21 19 26 26 H 1.48504 * 109.47177 * 59.99546 * 23 21 19 27 27 H 1.08993 * 109.46857 * 269.97690 * 1 2 3 28 28 H 1.09007 * 109.46507 * 29.97419 * 1 2 3 29 29 H 1.09003 * 109.47138 * 149.97019 * 1 2 3 30 30 H 1.08993 * 109.47124 * 270.10381 * 6 5 4 31 31 H 1.09004 * 109.47144 * 30.11094 * 6 5 4 32 32 H 1.09001 * 109.47041 * 150.10808 * 6 5 4 33 33 H 1.09000 * 109.47218 * 149.67775 * 8 7 5 34 34 H 1.09002 * 109.46638 * 29.68803 * 8 7 5 35 35 H 1.08997 * 109.47147 * 59.99621 * 9 8 7 36 36 H 1.09003 * 109.46728 * 299.99411 * 9 8 7 37 37 H 0.97004 * 120.00040 * 0.02562 * 10 9 8 38 38 H 1.07997 * 119.94959 * 359.97438 * 14 13 11 39 39 H 1.07997 * 119.66279 * 179.73914 * 15 14 13 40 40 H 1.07994 * 119.72040 * 180.02562 * 16 15 14 41 41 H 1.07999 * 120.05892 * 180.02562 * 17 16 15 42 42 H 0.96993 * 120.00043 * 354.76364 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6024 -0.6069 0.0042 6 6 4.9021 -1.3697 0.0112 7 6 2.3539 -1.1322 -0.0006 8 6 1.9590 -2.5864 -0.0003 9 6 1.8241 -3.0787 -1.4426 10 7 1.4407 -4.4926 -1.4421 11 6 1.2627 -5.1430 -2.6091 12 8 1.4199 -4.5559 -3.6625 13 6 0.8764 -6.5658 -2.6087 14 6 0.7536 -7.2596 -1.4078 15 6 0.3969 -8.5949 -1.4123 16 6 0.1514 -9.2585 -2.6067 17 6 0.2584 -8.5979 -3.8090 18 6 0.6201 -7.2383 -3.8321 19 6 0.7319 -6.5526 -5.0578 20 1 0.4628 -5.5085 -5.1190 21 6 1.1929 -7.2261 -6.1987 22 7 1.8594 -8.3426 -6.0734 23 14 0.8538 -6.5264 -7.8971 24 1 1.4413 -7.4202 -8.9272 25 1 -0.6129 -6.4265 -8.1076 26 1 1.4626 -5.1764 -8.0070 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3632 0.8903 -0.5135 29 1 -0.3633 -0.8897 -0.5143 30 1 5.2201 -1.5551 -1.0147 31 1 5.6636 -0.7852 0.5277 32 1 4.7627 -2.3204 0.5258 33 1 1.0054 -2.7038 0.5145 34 1 2.7231 -3.1702 0.5130 35 1 2.7777 -2.9614 -1.9572 36 1 1.0599 -2.4949 -1.9558 37 1 1.3143 -4.9606 -0.6019 38 1 0.9422 -6.7549 -0.4718 39 1 0.3077 -9.1275 -0.4770 40 1 -0.1267 -10.3019 -2.5922 41 1 0.0652 -9.1221 -4.7333 42 1 2.1014 -8.6666 -5.1918 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601120318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:19 Heat of formation + Delta-G solvation = 4.677271 kcal Electronic energy + Delta-G solvation = -25171.917381 eV Core-core repulsion = 21504.397529 eV Total energy + Delta-G solvation = -3667.519852 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.95172 -40.80080 -38.87070 -37.28322 -35.93630 -35.31224 -34.50499 -32.23764 -31.36641 -30.64952 -29.62984 -28.34684 -27.12370 -25.30475 -23.72853 -22.74229 -22.33827 -21.30525 -20.95756 -19.92975 -18.72553 -18.18985 -17.78777 -16.93921 -16.50120 -16.48070 -15.88325 -15.73658 -15.45372 -15.25376 -15.04940 -14.39589 -14.34702 -14.24388 -14.04172 -13.92161 -13.80462 -13.63936 -13.48996 -13.19127 -13.01720 -12.90428 -12.71280 -12.47827 -12.46452 -12.02209 -11.93271 -11.84032 -11.45259 -10.95836 -10.85224 -10.37867 -10.11124 -10.00840 -9.58698 -9.47040 -9.08676 -6.45042 0.42385 0.45256 0.93024 1.14098 1.46387 1.61734 1.76069 2.14479 2.27224 2.31036 2.46519 2.75841 3.21619 3.49466 3.58357 3.78451 3.98716 4.04835 4.27314 4.28123 4.31579 4.37514 4.44839 4.49813 4.61496 4.66518 4.69136 4.76744 4.81333 4.87393 4.90408 4.99699 5.05509 5.13477 5.16320 5.29518 5.45233 5.58459 5.67466 5.73437 5.91881 5.98877 6.22269 6.36053 6.71056 6.87916 6.94841 7.26966 7.63343 8.06050 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014914 B = 0.003208 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.945593 B = 8725.339201 C = 9667.092172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.017 3.983 3 N -0.401 5.401 4 O 0.080 5.920 5 C -0.021 4.021 6 C -0.077 4.077 7 C -0.211 4.211 8 C -0.035 4.035 9 C 0.134 3.866 10 N -0.724 5.724 11 C 0.557 3.443 12 O -0.582 6.582 13 C -0.283 4.283 14 C -0.039 4.039 15 C -0.244 4.244 16 C -0.073 4.073 17 C -0.228 4.228 18 C 0.097 3.903 19 C -0.513 4.513 20 H 0.080 0.920 21 C -0.002 4.002 22 N -0.819 5.819 23 Si 1.113 2.887 24 H -0.264 1.264 25 H -0.260 1.260 26 H -0.273 1.273 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.410 0.590 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.123 0.877 41 H 0.087 0.913 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.954 8.842 15.384 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 N -0.110 5.110 4 O 0.019 5.981 5 C -0.084 4.084 6 C -0.134 4.134 7 C -0.216 4.216 8 C -0.073 4.073 9 C 0.010 3.990 10 N -0.379 5.379 11 C 0.350 3.650 12 O -0.463 6.463 13 C -0.288 4.288 14 C -0.057 4.057 15 C -0.263 4.263 16 C -0.091 4.091 17 C -0.247 4.247 18 C 0.093 3.907 19 C -0.541 4.541 20 H 0.098 0.902 21 C -0.217 4.217 22 N -0.443 5.443 23 Si 0.931 3.069 24 H -0.188 1.188 25 H -0.184 1.184 26 H -0.198 1.198 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.247 0.753 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.141 0.859 41 H 0.105 0.895 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.105 10.259 13.043 16.727 hybrid contribution -0.299 -0.584 1.601 1.730 sum 1.806 9.675 14.644 17.644 Atomic orbital electron populations 1.20300 0.84483 1.04236 1.04549 1.23982 1.00151 0.88579 1.01427 1.73819 0.89850 1.25053 1.22294 1.84754 1.21415 1.23599 1.68344 1.24957 0.99609 0.83215 1.00647 1.20590 0.88702 0.99080 1.05040 1.20900 0.91783 0.97384 1.11491 1.19971 1.04697 0.87938 0.94667 1.21103 0.99336 0.80999 0.97528 1.45666 1.72587 1.11416 1.08199 1.18434 0.76112 0.87132 0.83279 1.90674 1.53377 1.69545 1.32731 1.19805 1.19516 0.94490 0.94959 1.21179 0.94345 0.94480 0.95723 1.20833 1.12724 0.95174 0.97525 1.21166 0.96285 0.99096 0.92566 1.21212 1.10208 0.95932 0.97373 1.17889 0.87807 0.92069 0.92984 1.21105 1.38066 1.00133 0.94805 0.90234 1.28399 0.91399 0.93110 1.08800 1.70497 1.25531 1.18618 1.29634 0.83048 0.78382 0.75935 0.69541 1.18802 1.18429 1.19831 0.88274 0.90615 0.89346 0.88967 0.88030 0.87159 0.88055 0.87377 0.93413 0.93863 0.75263 0.84124 0.84432 0.85906 0.89455 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.39 71.24 0.74 -0.64 16 2 C 0.02 0.40 7.33 43.58 0.32 0.72 16 3 N -0.40 -10.79 12.07 -49.55 -0.60 -11.39 16 4 O 0.08 1.97 11.20 71.60 0.80 2.77 16 5 C -0.02 -0.41 7.49 25.04 0.19 -0.22 16 6 C -0.08 -0.91 10.30 71.24 0.73 -0.17 16 7 C -0.21 -4.36 5.58 -19.74 -0.11 -4.47 16 8 C -0.03 -0.60 5.66 29.85 0.17 -0.43 16 9 C 0.13 3.62 5.66 86.38 0.49 4.11 16 10 N -0.72 -22.28 5.51 -466.37 -2.57 -24.85 16 11 C 0.56 24.98 7.73 86.66 0.67 25.65 16 12 O -0.58 -31.55 13.55 -4.09 -0.06 -31.60 16 13 C -0.28 -13.19 5.92 -19.70 -0.12 -13.31 16 14 C -0.04 -1.42 9.53 22.50 0.21 -1.20 16 15 C -0.24 -8.74 10.03 22.41 0.22 -8.51 16 16 C -0.07 -2.97 10.01 22.26 0.22 -2.75 16 17 C -0.23 -11.37 7.86 22.72 0.18 -11.19 16 18 C 0.10 5.20 5.18 -21.11 -0.11 5.09 16 19 C -0.51 -29.59 7.66 23.42 0.18 -29.41 16 20 H 0.08 4.87 5.91 -2.91 -0.02 4.85 16 21 C 0.00 -0.10 5.04 85.37 0.43 0.33 16 22 N -0.82 -45.69 12.57 21.88 0.27 -45.41 16 23 Si 1.11 47.37 29.98 68.60 2.06 49.43 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 25 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.11 0.92 7.44 -2.39 -0.02 0.91 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 1.35 7.44 -2.39 -0.02 1.33 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.41 9.44 6.51 -92.71 -0.60 8.84 16 38 H 0.14 3.68 6.41 -2.91 -0.02 3.66 16 39 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 40 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 41 H 0.09 4.60 6.93 -2.91 -0.02 4.58 16 42 H 0.28 16.21 6.54 -92.71 -0.61 15.60 16 Total: -1.00 -74.74 355.97 4.95 -69.79 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.62 Total: 27.68 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 4.42 Total: -36.41 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -2.89 Total: -81.65 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: 0.75 Total: -28.83 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.06 Total: 49.43 kcal Total: -74.74 4.95 -69.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601120318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.467 kcal (2) G-P(sol) polarization free energy of solvation -74.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds