Wall clock time and date at job start Tue Mar 31 2020 11:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30172 * 126.80457 * 2 1 4 4 O 1.20922 * 111.60518 * 179.97438 * 3 2 1 5 5 C 1.34044 * 111.56724 * 359.75112 * 4 3 2 6 6 C 1.50696 * 126.77464 * 180.29214 * 5 4 3 7 7 C 1.35441 * 106.44374 * 0.38775 * 5 4 3 8 8 C 1.50704 * 128.00474 * 179.91061 * 7 5 4 9 9 H 1.09007 * 109.47228 * 194.67831 * 8 7 5 10 10 C 1.52998 * 109.47426 * 74.67994 * 8 7 5 11 11 N 1.46493 * 109.47067 * 314.67563 * 8 7 5 12 12 C 1.34781 * 120.00262 * 204.99805 * 11 8 7 13 13 O 1.21605 * 120.00005 * 0.02562 * 12 11 8 14 14 C 1.47433 * 119.99964 * 179.97438 * 12 11 8 15 15 C 1.39220 * 120.28624 * 354.16363 * 14 12 11 16 16 C 1.38221 * 120.09255 * 179.97438 * 15 14 12 17 17 C 1.38826 * 120.67864 * 0.02562 * 16 15 14 18 18 C 1.37594 * 120.56565 * 359.97438 * 17 16 15 19 19 C 1.40710 * 119.88558 * 359.74750 * 18 17 16 20 20 C 1.40891 * 120.32650 * 180.25591 * 19 18 17 21 21 H 1.08000 * 119.99541 * 146.07950 * 20 19 18 22 22 C 1.40271 * 120.00257 * 326.07272 * 20 19 18 23 23 N 1.30634 * 119.99851 * 350.69858 * 22 20 19 24 24 Si 1.86800 * 120.00222 * 170.69710 * 22 20 19 25 25 H 1.48498 * 109.47076 * 90.00150 * 24 22 20 26 26 H 1.48500 * 109.47213 * 210.00231 * 24 22 20 27 27 H 1.48495 * 109.46773 * 329.99992 * 24 22 20 28 28 H 1.08993 * 109.47734 * 270.03264 * 1 2 3 29 29 H 1.09002 * 109.47186 * 30.03513 * 1 2 3 30 30 H 1.09001 * 109.46961 * 150.03109 * 1 2 3 31 31 H 1.09005 * 109.47293 * 270.11054 * 6 5 4 32 32 H 1.08998 * 109.47574 * 30.11145 * 6 5 4 33 33 H 1.08997 * 109.47025 * 150.11527 * 6 5 4 34 34 H 1.09007 * 109.46784 * 300.00109 * 10 8 7 35 35 H 1.09000 * 109.47095 * 59.99430 * 10 8 7 36 36 H 1.08995 * 109.47409 * 180.02562 * 10 8 7 37 37 H 0.97007 * 120.00224 * 24.99887 * 11 8 7 38 38 H 1.08004 * 119.95179 * 359.97438 * 15 14 12 39 39 H 1.08002 * 119.65980 * 179.97438 * 16 15 14 40 40 H 1.07994 * 119.71837 * 179.97438 * 17 16 15 41 41 H 1.07999 * 120.05789 * 179.97438 * 18 17 16 42 42 H 0.96998 * 119.99929 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7252 0.0005 5 6 3.6024 -0.6069 0.0063 6 6 4.9021 -1.3696 0.0149 7 6 2.3540 -1.1321 0.0009 8 6 1.9590 -2.5864 0.0020 9 1 0.9058 -2.6772 -0.2638 10 6 2.1857 -3.1754 1.3958 11 7 2.7734 -3.3144 -0.9741 12 6 2.3095 -4.4551 -1.5219 13 8 1.2147 -4.8799 -1.2062 14 6 3.1290 -5.1874 -2.5047 15 6 4.3272 -4.6459 -2.9623 16 6 5.0925 -5.3361 -3.8834 17 6 4.6800 -6.5718 -4.3633 18 6 3.5006 -7.1325 -3.9298 19 6 2.7058 -6.4532 -2.9881 20 6 1.4992 -7.0212 -2.5337 21 1 1.1750 -6.8582 -1.5165 22 6 0.7189 -7.7983 -3.4025 23 7 1.0106 -7.8476 -4.6749 24 14 -0.7374 -8.7627 -2.7401 25 1 -1.9578 -7.9187 -2.7986 26 1 -0.9390 -9.9823 -3.5630 27 1 -0.4728 -9.1537 -1.3322 28 1 -0.3634 0.0006 1.0276 29 1 -0.3634 0.8897 -0.5144 30 1 -0.3633 -0.8903 -0.5134 31 1 5.2209 -1.5558 -1.0108 32 1 5.6632 -0.7849 0.5314 33 1 4.7623 -2.3199 0.5300 34 1 3.2390 -3.0846 1.6617 35 1 1.5798 -2.6337 2.1221 36 1 1.9005 -4.2274 1.3966 37 1 3.6467 -2.9754 -1.2263 38 1 4.6591 -3.6853 -2.5971 39 1 6.0207 -4.9094 -4.2340 40 1 5.2899 -7.0974 -5.0830 41 1 3.1873 -8.0940 -4.3088 42 1 0.4708 -8.3847 -5.2758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601172706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:27 Heat of formation + Delta-G solvation = 34.579106 kcal Electronic energy + Delta-G solvation = -26096.208850 eV Core-core repulsion = 22429.985639 eV Total energy + Delta-G solvation = -3666.223211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.97712 -39.20080 -37.20773 -35.93534 -34.26923 -33.73703 -32.62808 -30.81213 -29.84516 -28.96048 -28.73039 -27.78193 -25.50193 -24.21318 -22.36879 -21.26681 -20.82196 -19.96925 -19.38671 -17.71009 -17.63585 -17.08521 -16.21421 -15.58252 -15.19953 -14.59514 -14.25872 -14.19717 -13.85822 -13.61257 -13.48217 -13.40493 -13.18690 -13.02411 -12.80886 -12.72477 -12.50949 -12.42354 -12.30602 -11.87006 -11.60634 -11.14700 -11.12132 -11.06605 -10.91441 -10.72757 -10.55407 -10.11792 -9.91029 -9.72049 -9.28879 -9.23897 -8.51204 -8.43438 -7.62793 -7.39372 -6.82536 -4.41646 1.38400 2.12003 2.32408 2.78490 3.01864 3.08385 3.15191 3.21389 3.84671 3.95266 4.09173 4.14455 4.39541 4.65137 4.77604 4.89336 5.12612 5.21819 5.36867 5.38941 5.42743 5.50289 5.58416 5.61360 5.66286 5.79378 5.85774 5.92089 5.97433 6.07090 6.21555 6.26966 6.37626 6.58739 6.92069 7.03135 7.10643 7.19672 7.42705 7.58615 7.85099 7.94646 8.14250 8.22208 8.31312 8.63029 8.79098 8.86346 9.34364 10.12660 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.004153 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.688478 B = 6741.221721 C = 7967.153764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.032 3.968 3 N -0.370 5.370 4 O 0.095 5.905 5 C -0.024 4.024 6 C -0.085 4.085 7 C -0.202 4.202 8 C 0.225 3.775 9 H 0.097 0.903 10 C -0.156 4.156 11 N -0.745 5.745 12 C 0.567 3.433 13 O -0.535 6.535 14 C -0.263 4.263 15 C -0.058 4.058 16 C -0.245 4.245 17 C -0.096 4.096 18 C -0.147 4.147 19 C 0.146 3.854 20 C -0.415 4.415 21 H 0.105 0.895 22 C 0.069 3.931 23 N -0.792 5.792 24 Si 0.917 3.083 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.259 1.259 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.390 0.610 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.118 0.882 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 9.181 7.897 12.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 N -0.076 5.076 4 O 0.031 5.969 5 C -0.088 4.088 6 C -0.142 4.142 7 C -0.206 4.206 8 C 0.119 3.881 9 H 0.115 0.885 10 C -0.215 4.215 11 N -0.401 5.401 12 C 0.362 3.638 13 O -0.413 6.413 14 C -0.268 4.268 15 C -0.076 4.076 16 C -0.264 4.264 17 C -0.115 4.115 18 C -0.166 4.166 19 C 0.142 3.858 20 C -0.443 4.443 21 H 0.123 0.877 22 C -0.149 4.149 23 N -0.417 5.417 24 Si 0.742 3.258 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.183 1.183 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.226 0.774 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.136 0.864 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.840 10.077 7.899 13.115 hybrid contribution -0.238 -0.819 -0.157 0.867 sum 2.602 9.258 7.742 12.346 Atomic orbital electron populations 1.20216 0.85888 1.04103 1.03425 1.23404 0.98957 0.88199 1.02182 1.73824 0.89260 1.23848 1.20671 1.84777 1.21648 1.22472 1.67989 1.24220 0.98171 0.83715 1.02668 1.20531 0.90134 0.99020 1.04519 1.21185 0.91908 0.97506 1.10002 1.18828 0.97141 0.82579 0.89578 0.88502 1.22174 1.01619 1.02273 0.95423 1.46242 1.21436 1.26707 1.45690 1.18432 0.86038 0.79012 0.80359 1.90674 1.21427 1.66906 1.62319 1.19420 0.99583 0.98142 1.09616 1.20614 0.93949 0.96700 0.96379 1.20276 1.01663 0.98631 1.05862 1.20802 0.96592 0.95463 0.98594 1.21368 0.93512 1.00630 1.01112 1.17468 0.91818 0.88025 0.88477 1.20159 1.02687 1.21631 0.99818 0.87708 1.26123 0.99591 0.94762 0.94414 1.69716 1.36619 1.31618 1.03768 0.86152 0.80826 0.78725 0.80125 1.19313 1.20315 1.18295 0.90057 0.90534 0.89586 0.89038 0.89468 0.88452 0.92653 0.92174 0.90890 0.77423 0.89556 0.89103 0.89075 0.86443 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.34 36.00 0.37 -0.48 16 2 C 0.03 0.43 7.33 -82.10 -0.60 -0.17 16 3 N -0.37 -5.34 12.07 33.42 0.40 -4.94 16 4 O 0.10 1.27 11.20 17.17 0.19 1.47 16 5 C -0.02 -0.29 7.34 -35.31 -0.26 -0.55 16 6 C -0.08 -0.73 8.72 36.00 0.31 -0.42 16 7 C -0.20 -2.72 5.24 -104.42 -0.55 -3.26 16 8 C 0.22 3.33 2.84 -69.09 -0.20 3.14 16 9 H 0.10 1.59 6.79 -51.93 -0.35 1.24 16 10 C -0.16 -2.06 9.47 37.16 0.35 -1.71 16 11 N -0.74 -12.56 4.85 -56.01 -0.27 -12.83 16 12 C 0.57 12.49 7.68 -12.51 -0.10 12.39 16 13 O -0.54 -13.34 13.26 5.27 0.07 -13.27 16 14 C -0.26 -6.18 5.92 -104.37 -0.62 -6.80 16 15 C -0.06 -1.18 9.52 -39.22 -0.37 -1.55 16 16 C -0.24 -5.02 10.03 -39.37 -0.39 -5.42 16 17 C -0.10 -2.10 10.01 -39.60 -0.40 -2.49 16 18 C -0.15 -3.64 8.62 -38.88 -0.34 -3.98 16 19 C 0.15 3.81 5.51 -106.54 -0.59 3.23 16 20 C -0.41 -11.09 7.67 -37.81 -0.29 -11.38 16 21 H 0.11 2.88 5.93 -52.49 -0.31 2.57 16 22 C 0.07 1.75 5.25 -17.30 -0.09 1.66 16 23 N -0.79 -20.21 11.13 55.56 0.62 -19.59 16 24 Si 0.92 19.27 29.57 -169.99 -5.03 14.25 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.94 7.45 -51.93 -0.39 0.55 16 31 H 0.09 0.72 7.78 -51.93 -0.40 0.32 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.84 6.41 -51.93 -0.33 0.50 16 34 H 0.05 0.64 6.81 -51.93 -0.35 0.29 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.39 5.73 4.17 -40.82 -0.17 5.56 16 38 H 0.09 1.44 6.44 -52.48 -0.34 1.10 16 39 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.12 2.98 6.58 -52.49 -0.35 2.63 16 42 H 0.28 6.55 8.29 -40.82 -0.34 6.21 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -30.07 348.35 -7.60 -37.67 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.09 Total: 9.79 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -3.75 Total: -17.80 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.75 Total: -37.36 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.26 Total: -11.81 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.07 -7.60 -37.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601172706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.252 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds