Wall clock time and date at job start Tue Mar 31 2020 11:43:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.30172 * 126.80457 * 2 1
4 4 O 1.20922 * 111.60518 * 179.97438 * 3 2 1
5 5 C 1.34044 * 111.56724 * 359.75112 * 4 3 2
6 6 C 1.50696 * 126.77464 * 180.29214 * 5 4 3
7 7 C 1.35441 * 106.44374 * 0.38775 * 5 4 3
8 8 C 1.50704 * 128.00474 * 179.91061 * 7 5 4
9 9 H 1.09007 * 109.47228 * 194.67831 * 8 7 5
10 10 C 1.52998 * 109.47426 * 74.67994 * 8 7 5
11 11 N 1.46493 * 109.47067 * 314.67563 * 8 7 5
12 12 C 1.34781 * 120.00262 * 204.99805 * 11 8 7
13 13 O 1.21605 * 120.00005 * 0.02562 * 12 11 8
14 14 C 1.47433 * 119.99964 * 179.97438 * 12 11 8
15 15 C 1.39220 * 120.28624 * 354.16363 * 14 12 11
16 16 C 1.38221 * 120.09255 * 179.97438 * 15 14 12
17 17 C 1.38826 * 120.67864 * 0.02562 * 16 15 14
18 18 C 1.37594 * 120.56565 * 359.97438 * 17 16 15
19 19 C 1.40710 * 119.88558 * 359.74750 * 18 17 16
20 20 C 1.40891 * 120.32650 * 180.25591 * 19 18 17
21 21 H 1.08000 * 119.99541 * 146.07950 * 20 19 18
22 22 C 1.40271 * 120.00257 * 326.07272 * 20 19 18
23 23 N 1.30634 * 119.99851 * 350.69858 * 22 20 19
24 24 Si 1.86800 * 120.00222 * 170.69710 * 22 20 19
25 25 H 1.48498 * 109.47076 * 90.00150 * 24 22 20
26 26 H 1.48500 * 109.47213 * 210.00231 * 24 22 20
27 27 H 1.48495 * 109.46773 * 329.99992 * 24 22 20
28 28 H 1.08993 * 109.47734 * 270.03264 * 1 2 3
29 29 H 1.09002 * 109.47186 * 30.03513 * 1 2 3
30 30 H 1.09001 * 109.46961 * 150.03109 * 1 2 3
31 31 H 1.09005 * 109.47293 * 270.11054 * 6 5 4
32 32 H 1.08998 * 109.47574 * 30.11145 * 6 5 4
33 33 H 1.08997 * 109.47025 * 150.11527 * 6 5 4
34 34 H 1.09007 * 109.46784 * 300.00109 * 10 8 7
35 35 H 1.09000 * 109.47095 * 59.99430 * 10 8 7
36 36 H 1.08995 * 109.47409 * 180.02562 * 10 8 7
37 37 H 0.97007 * 120.00224 * 24.99887 * 11 8 7
38 38 H 1.08004 * 119.95179 * 359.97438 * 15 14 12
39 39 H 1.08002 * 119.65980 * 179.97438 * 16 15 14
40 40 H 1.07994 * 119.71837 * 179.97438 * 17 16 15
41 41 H 1.07999 * 120.05789 * 179.97438 * 18 17 16
42 42 H 0.96998 * 119.99929 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2868 1.0423 0.0000
4 8 3.4537 0.7252 0.0005
5 6 3.6024 -0.6069 0.0063
6 6 4.9021 -1.3696 0.0149
7 6 2.3540 -1.1321 0.0009
8 6 1.9590 -2.5864 0.0020
9 1 0.9058 -2.6772 -0.2638
10 6 2.1857 -3.1754 1.3958
11 7 2.7734 -3.3144 -0.9741
12 6 2.3095 -4.4551 -1.5219
13 8 1.2147 -4.8799 -1.2062
14 6 3.1290 -5.1874 -2.5047
15 6 4.3272 -4.6459 -2.9623
16 6 5.0925 -5.3361 -3.8834
17 6 4.6800 -6.5718 -4.3633
18 6 3.5006 -7.1325 -3.9298
19 6 2.7058 -6.4532 -2.9881
20 6 1.4992 -7.0212 -2.5337
21 1 1.1750 -6.8582 -1.5165
22 6 0.7189 -7.7983 -3.4025
23 7 1.0106 -7.8476 -4.6749
24 14 -0.7374 -8.7627 -2.7401
25 1 -1.9578 -7.9187 -2.7986
26 1 -0.9390 -9.9823 -3.5630
27 1 -0.4728 -9.1537 -1.3322
28 1 -0.3634 0.0006 1.0276
29 1 -0.3634 0.8897 -0.5144
30 1 -0.3633 -0.8903 -0.5134
31 1 5.2209 -1.5558 -1.0108
32 1 5.6632 -0.7849 0.5314
33 1 4.7623 -2.3199 0.5300
34 1 3.2390 -3.0846 1.6617
35 1 1.5798 -2.6337 2.1221
36 1 1.9005 -4.2274 1.3966
37 1 3.6467 -2.9754 -1.2263
38 1 4.6591 -3.6853 -2.5971
39 1 6.0207 -4.9094 -4.2340
40 1 5.2899 -7.0974 -5.0830
41 1 3.1873 -8.0940 -4.3088
42 1 0.4708 -8.3847 -5.2758
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601172706.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:43:27
Heat of formation + Delta-G solvation = 34.579106 kcal
Electronic energy + Delta-G solvation = -26096.208850 eV
Core-core repulsion = 22429.985639 eV
Total energy + Delta-G solvation = -3666.223211 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-44.97712 -39.20080 -37.20773 -35.93534 -34.26923 -33.73703 -32.62808 -30.81213
-29.84516 -28.96048 -28.73039 -27.78193 -25.50193 -24.21318 -22.36879 -21.26681
-20.82196 -19.96925 -19.38671 -17.71009 -17.63585 -17.08521 -16.21421 -15.58252
-15.19953 -14.59514 -14.25872 -14.19717 -13.85822 -13.61257 -13.48217 -13.40493
-13.18690 -13.02411 -12.80886 -12.72477 -12.50949 -12.42354 -12.30602 -11.87006
-11.60634 -11.14700 -11.12132 -11.06605 -10.91441 -10.72757 -10.55407 -10.11792
-9.91029 -9.72049 -9.28879 -9.23897 -8.51204 -8.43438 -7.62793 -7.39372
-6.82536 -4.41646 1.38400 2.12003 2.32408 2.78490 3.01864 3.08385
3.15191 3.21389 3.84671 3.95266 4.09173 4.14455 4.39541 4.65137
4.77604 4.89336 5.12612 5.21819 5.36867 5.38941 5.42743 5.50289
5.58416 5.61360 5.66286 5.79378 5.85774 5.92089 5.97433 6.07090
6.21555 6.26966 6.37626 6.58739 6.92069 7.03135 7.10643 7.19672
7.42705 7.58615 7.85099 7.94646 8.14250 8.22208 8.31312 8.63029
8.79098 8.86346 9.34364 10.12660
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.015333 B = 0.004153 C = 0.003514
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1825.688478 B = 6741.221721 C = 7967.153764
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.032 3.968
3 N -0.370 5.370
4 O 0.095 5.905
5 C -0.024 4.024
6 C -0.085 4.085
7 C -0.202 4.202
8 C 0.225 3.775
9 H 0.097 0.903
10 C -0.156 4.156
11 N -0.745 5.745
12 C 0.567 3.433
13 O -0.535 6.535
14 C -0.263 4.263
15 C -0.058 4.058
16 C -0.245 4.245
17 C -0.096 4.096
18 C -0.147 4.147
19 C 0.146 3.854
20 C -0.415 4.415
21 H 0.105 0.895
22 C 0.069 3.931
23 N -0.792 5.792
24 Si 0.917 3.083
25 H -0.268 1.268
26 H -0.278 1.278
27 H -0.259 1.259
28 H 0.081 0.919
29 H 0.076 0.924
30 H 0.085 0.915
31 H 0.091 0.909
32 H 0.087 0.913
33 H 0.097 0.903
34 H 0.054 0.946
35 H 0.059 0.941
36 H 0.072 0.928
37 H 0.390 0.610
38 H 0.086 0.914
39 H 0.091 0.909
40 H 0.091 0.909
41 H 0.118 0.882
42 H 0.282 0.718
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.955 9.181 7.897 12.739
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.127 4.127
3 N -0.076 5.076
4 O 0.031 5.969
5 C -0.088 4.088
6 C -0.142 4.142
7 C -0.206 4.206
8 C 0.119 3.881
9 H 0.115 0.885
10 C -0.215 4.215
11 N -0.401 5.401
12 C 0.362 3.638
13 O -0.413 6.413
14 C -0.268 4.268
15 C -0.076 4.076
16 C -0.264 4.264
17 C -0.115 4.115
18 C -0.166 4.166
19 C 0.142 3.858
20 C -0.443 4.443
21 H 0.123 0.877
22 C -0.149 4.149
23 N -0.417 5.417
24 Si 0.742 3.258
25 H -0.193 1.193
26 H -0.203 1.203
27 H -0.183 1.183
28 H 0.099 0.901
29 H 0.095 0.905
30 H 0.104 0.896
31 H 0.110 0.890
32 H 0.105 0.895
33 H 0.115 0.885
34 H 0.073 0.927
35 H 0.078 0.922
36 H 0.091 0.909
37 H 0.226 0.774
38 H 0.104 0.896
39 H 0.109 0.891
40 H 0.109 0.891
41 H 0.136 0.864
42 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 2.840 10.077 7.899 13.115
hybrid contribution -0.238 -0.819 -0.157 0.867
sum 2.602 9.258 7.742 12.346
Atomic orbital electron populations
1.20216 0.85888 1.04103 1.03425 1.23404 0.98957 0.88199 1.02182
1.73824 0.89260 1.23848 1.20671 1.84777 1.21648 1.22472 1.67989
1.24220 0.98171 0.83715 1.02668 1.20531 0.90134 0.99020 1.04519
1.21185 0.91908 0.97506 1.10002 1.18828 0.97141 0.82579 0.89578
0.88502 1.22174 1.01619 1.02273 0.95423 1.46242 1.21436 1.26707
1.45690 1.18432 0.86038 0.79012 0.80359 1.90674 1.21427 1.66906
1.62319 1.19420 0.99583 0.98142 1.09616 1.20614 0.93949 0.96700
0.96379 1.20276 1.01663 0.98631 1.05862 1.20802 0.96592 0.95463
0.98594 1.21368 0.93512 1.00630 1.01112 1.17468 0.91818 0.88025
0.88477 1.20159 1.02687 1.21631 0.99818 0.87708 1.26123 0.99591
0.94762 0.94414 1.69716 1.36619 1.31618 1.03768 0.86152 0.80826
0.78725 0.80125 1.19313 1.20315 1.18295 0.90057 0.90534 0.89586
0.89038 0.89468 0.88452 0.92653 0.92174 0.90890 0.77423 0.89556
0.89103 0.89075 0.86443 0.90686
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.86 10.34 36.00 0.37 -0.48 16
2 C 0.03 0.43 7.33 -82.10 -0.60 -0.17 16
3 N -0.37 -5.34 12.07 33.42 0.40 -4.94 16
4 O 0.10 1.27 11.20 17.17 0.19 1.47 16
5 C -0.02 -0.29 7.34 -35.31 -0.26 -0.55 16
6 C -0.08 -0.73 8.72 36.00 0.31 -0.42 16
7 C -0.20 -2.72 5.24 -104.42 -0.55 -3.26 16
8 C 0.22 3.33 2.84 -69.09 -0.20 3.14 16
9 H 0.10 1.59 6.79 -51.93 -0.35 1.24 16
10 C -0.16 -2.06 9.47 37.16 0.35 -1.71 16
11 N -0.74 -12.56 4.85 -56.01 -0.27 -12.83 16
12 C 0.57 12.49 7.68 -12.51 -0.10 12.39 16
13 O -0.54 -13.34 13.26 5.27 0.07 -13.27 16
14 C -0.26 -6.18 5.92 -104.37 -0.62 -6.80 16
15 C -0.06 -1.18 9.52 -39.22 -0.37 -1.55 16
16 C -0.24 -5.02 10.03 -39.37 -0.39 -5.42 16
17 C -0.10 -2.10 10.01 -39.60 -0.40 -2.49 16
18 C -0.15 -3.64 8.62 -38.88 -0.34 -3.98 16
19 C 0.15 3.81 5.51 -106.54 -0.59 3.23 16
20 C -0.41 -11.09 7.67 -37.81 -0.29 -11.38 16
21 H 0.11 2.88 5.93 -52.49 -0.31 2.57 16
22 C 0.07 1.75 5.25 -17.30 -0.09 1.66 16
23 N -0.79 -20.21 11.13 55.56 0.62 -19.59 16
24 Si 0.92 19.27 29.57 -169.99 -5.03 14.25 16
25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16
26 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16
27 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16
28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16
30 H 0.09 0.94 7.45 -51.93 -0.39 0.55 16
31 H 0.09 0.72 7.78 -51.93 -0.40 0.32 16
32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
33 H 0.10 0.84 6.41 -51.93 -0.33 0.50 16
34 H 0.05 0.64 6.81 -51.93 -0.35 0.29 16
35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16
37 H 0.39 5.73 4.17 -40.82 -0.17 5.56 16
38 H 0.09 1.44 6.44 -52.48 -0.34 1.10 16
39 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16
40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16
41 H 0.12 2.98 6.58 -52.49 -0.35 2.63 16
42 H 0.28 6.55 8.29 -40.82 -0.34 6.21 16
LS Contribution 348.35 15.07 5.25 5.25
Total: -1.00 -30.07 348.35 -7.60 -37.67
By element:
Atomic # 1 Polarization: 14.88 SS G_CDS: -5.09 Total: 9.79 kcal
Atomic # 6 Polarization: -14.05 SS G_CDS: -3.75 Total: -17.80 kcal
Atomic # 7 Polarization: -38.11 SS G_CDS: 0.75 Total: -37.36 kcal
Atomic # 8 Polarization: -12.07 SS G_CDS: 0.26 Total: -11.81 kcal
Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.25 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -30.07 -7.60 -37.67 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601172706.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.252 kcal
(2) G-P(sol) polarization free energy of solvation -30.072 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.181 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.579 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds