Wall clock time and date at job start Tue Mar 31 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30172 * 126.80457 * 2 1 4 4 O 1.20922 * 111.60518 * 179.97438 * 3 2 1 5 5 C 1.34044 * 111.56724 * 359.75112 * 4 3 2 6 6 C 1.50696 * 126.77464 * 180.29214 * 5 4 3 7 7 C 1.35441 * 106.44374 * 0.38775 * 5 4 3 8 8 C 1.50704 * 128.00474 * 179.91061 * 7 5 4 9 9 H 1.09007 * 109.47228 * 194.67831 * 8 7 5 10 10 C 1.52998 * 109.47426 * 74.67994 * 8 7 5 11 11 N 1.46493 * 109.47067 * 314.67563 * 8 7 5 12 12 C 1.34781 * 120.00262 * 204.99805 * 11 8 7 13 13 O 1.21605 * 120.00005 * 0.02562 * 12 11 8 14 14 C 1.47433 * 119.99964 * 179.97438 * 12 11 8 15 15 C 1.39220 * 120.28624 * 354.16363 * 14 12 11 16 16 C 1.38221 * 120.09255 * 179.97438 * 15 14 12 17 17 C 1.38826 * 120.67864 * 0.02562 * 16 15 14 18 18 C 1.37594 * 120.56565 * 359.97438 * 17 16 15 19 19 C 1.40710 * 119.88558 * 359.74750 * 18 17 16 20 20 C 1.40891 * 120.32650 * 180.25591 * 19 18 17 21 21 H 1.08000 * 119.99541 * 146.07950 * 20 19 18 22 22 C 1.40271 * 120.00257 * 326.07272 * 20 19 18 23 23 N 1.30634 * 119.99851 * 350.69858 * 22 20 19 24 24 Si 1.86800 * 120.00222 * 170.69710 * 22 20 19 25 25 H 1.48498 * 109.47076 * 90.00150 * 24 22 20 26 26 H 1.48500 * 109.47213 * 210.00231 * 24 22 20 27 27 H 1.48495 * 109.46773 * 329.99992 * 24 22 20 28 28 H 1.08993 * 109.47734 * 270.03264 * 1 2 3 29 29 H 1.09002 * 109.47186 * 30.03513 * 1 2 3 30 30 H 1.09001 * 109.46961 * 150.03109 * 1 2 3 31 31 H 1.09005 * 109.47293 * 270.11054 * 6 5 4 32 32 H 1.08998 * 109.47574 * 30.11145 * 6 5 4 33 33 H 1.08997 * 109.47025 * 150.11527 * 6 5 4 34 34 H 1.09007 * 109.46784 * 300.00109 * 10 8 7 35 35 H 1.09000 * 109.47095 * 59.99430 * 10 8 7 36 36 H 1.08995 * 109.47409 * 180.02562 * 10 8 7 37 37 H 0.97007 * 120.00224 * 24.99887 * 11 8 7 38 38 H 1.08004 * 119.95179 * 359.97438 * 15 14 12 39 39 H 1.08002 * 119.65980 * 179.97438 * 16 15 14 40 40 H 1.07994 * 119.71837 * 179.97438 * 17 16 15 41 41 H 1.07999 * 120.05789 * 179.97438 * 18 17 16 42 42 H 0.96998 * 119.99929 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7252 0.0005 5 6 3.6024 -0.6069 0.0063 6 6 4.9021 -1.3696 0.0149 7 6 2.3540 -1.1321 0.0009 8 6 1.9590 -2.5864 0.0020 9 1 0.9058 -2.6772 -0.2638 10 6 2.1857 -3.1754 1.3958 11 7 2.7734 -3.3144 -0.9741 12 6 2.3095 -4.4551 -1.5219 13 8 1.2147 -4.8799 -1.2062 14 6 3.1290 -5.1874 -2.5047 15 6 4.3272 -4.6459 -2.9623 16 6 5.0925 -5.3361 -3.8834 17 6 4.6800 -6.5718 -4.3633 18 6 3.5006 -7.1325 -3.9298 19 6 2.7058 -6.4532 -2.9881 20 6 1.4992 -7.0212 -2.5337 21 1 1.1750 -6.8582 -1.5165 22 6 0.7189 -7.7983 -3.4025 23 7 1.0106 -7.8476 -4.6749 24 14 -0.7374 -8.7627 -2.7401 25 1 -1.9578 -7.9187 -2.7986 26 1 -0.9390 -9.9823 -3.5630 27 1 -0.4728 -9.1537 -1.3322 28 1 -0.3634 0.0006 1.0276 29 1 -0.3634 0.8897 -0.5144 30 1 -0.3633 -0.8903 -0.5134 31 1 5.2209 -1.5558 -1.0108 32 1 5.6632 -0.7849 0.5314 33 1 4.7623 -2.3199 0.5300 34 1 3.2390 -3.0846 1.6617 35 1 1.5798 -2.6337 2.1221 36 1 1.9005 -4.2274 1.3966 37 1 3.6467 -2.9754 -1.2263 38 1 4.6591 -3.6853 -2.5971 39 1 6.0207 -4.9094 -4.2340 40 1 5.2899 -7.0974 -5.0830 41 1 3.1873 -8.0940 -4.3088 42 1 0.4708 -8.3847 -5.2758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601172706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:24 Heat of formation + Delta-G solvation = 17.635905 kcal Electronic energy + Delta-G solvation = -26096.943562 eV Core-core repulsion = 22429.985639 eV Total energy + Delta-G solvation = -3666.957924 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.00156 -40.83232 -38.81815 -37.35856 -35.64117 -35.23738 -33.81730 -32.25803 -31.61598 -30.48296 -29.66544 -28.64885 -27.30218 -25.44111 -23.93097 -22.83184 -22.11759 -21.28670 -20.80109 -19.36321 -18.73460 -18.45395 -17.56562 -17.17012 -16.82977 -15.99216 -15.78401 -15.61813 -15.38408 -14.90832 -14.55489 -14.45951 -14.41945 -14.31791 -13.99225 -13.92689 -13.71295 -13.61789 -13.38148 -13.28830 -13.04421 -12.83923 -12.77571 -12.48387 -12.27693 -12.19597 -11.99016 -11.86635 -11.46238 -11.12201 -10.91871 -10.33108 -10.17191 -9.96348 -9.37537 -9.20252 -8.65311 -6.33357 0.41085 0.54819 1.04026 1.08282 1.35227 1.48005 1.51575 2.08202 2.22133 2.37917 2.46182 2.81775 3.12970 3.48466 3.69144 3.75396 3.92620 4.19524 4.29978 4.35371 4.39577 4.42675 4.58664 4.60501 4.62407 4.64853 4.67565 4.80910 4.82770 4.88542 5.00499 5.11481 5.13141 5.14496 5.27201 5.32404 5.37040 5.64216 5.66655 5.85221 6.08267 6.13878 6.36988 6.66130 6.81249 6.94866 7.02611 7.23396 7.67348 8.32033 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.004153 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.688478 B = 6741.221721 C = 7967.153764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.025 3.975 3 N -0.391 5.391 4 O 0.092 5.908 5 C -0.006 4.006 6 C -0.091 4.091 7 C -0.223 4.223 8 C 0.229 3.771 9 H 0.075 0.925 10 C -0.150 4.150 11 N -0.724 5.724 12 C 0.564 3.436 13 O -0.573 6.573 14 C -0.280 4.280 15 C -0.054 4.054 16 C -0.235 4.235 17 C -0.093 4.093 18 C -0.177 4.177 19 C 0.116 3.884 20 C -0.455 4.455 21 H 0.084 0.916 22 C 0.032 3.968 23 N -0.824 5.824 24 Si 0.977 3.023 25 H -0.272 1.272 26 H -0.259 1.259 27 H -0.262 1.262 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.403 0.597 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.117 10.781 8.309 14.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 N -0.099 5.099 4 O 0.030 5.970 5 C -0.070 4.070 6 C -0.148 4.148 7 C -0.227 4.227 8 C 0.124 3.876 9 H 0.093 0.907 10 C -0.209 4.209 11 N -0.380 5.380 12 C 0.358 3.642 13 O -0.453 6.453 14 C -0.285 4.285 15 C -0.073 4.073 16 C -0.254 4.254 17 C -0.112 4.112 18 C -0.197 4.197 19 C 0.112 3.888 20 C -0.484 4.484 21 H 0.102 0.898 22 C -0.183 4.183 23 N -0.451 5.451 24 Si 0.799 3.201 25 H -0.197 1.197 26 H -0.183 1.183 27 H -0.186 1.186 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.241 0.759 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.136 0.864 41 H 0.117 0.883 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.054 11.713 8.317 15.228 hybrid contribution -0.705 -1.133 -0.270 1.361 sum 4.349 10.580 8.046 13.985 Atomic orbital electron populations 1.20305 0.84657 1.04167 1.04613 1.23788 1.00030 0.88103 1.01474 1.73825 0.89711 1.24357 1.22015 1.84760 1.21288 1.23045 1.67943 1.24784 0.98956 0.83257 0.99995 1.20795 0.89041 0.99023 1.05899 1.20993 0.92859 0.96429 1.12456 1.18788 0.95666 0.83495 0.89685 0.90676 1.22108 1.03288 1.00690 0.94772 1.45969 1.21892 1.25046 1.45044 1.18392 0.85436 0.80093 0.80294 1.90657 1.23013 1.68172 1.63505 1.19815 1.00972 0.97798 1.09870 1.21045 0.92409 0.98226 0.95604 1.20796 1.02671 0.97524 1.04380 1.21180 0.95512 0.96193 0.98272 1.21304 0.95172 1.00629 1.02567 1.17841 0.92088 0.89359 0.89492 1.20129 1.04276 1.24489 0.99519 0.89823 1.26774 1.01701 0.95279 0.94519 1.69747 1.38037 1.32841 1.04455 0.85277 0.77436 0.77902 0.79501 1.19702 1.18314 1.18575 0.88308 0.89801 0.90122 0.87516 0.86743 0.88132 0.90601 0.90387 0.93418 0.75876 0.85092 0.84889 0.86393 0.88329 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 10.34 71.24 0.74 -0.94 16 2 C 0.03 0.65 7.33 43.58 0.32 0.97 16 3 N -0.39 -10.68 12.07 -49.56 -0.60 -11.28 16 4 O 0.09 2.24 11.20 71.59 0.80 3.04 16 5 C -0.01 -0.12 7.34 25.04 0.18 0.06 16 6 C -0.09 -1.18 8.72 71.23 0.62 -0.56 16 7 C -0.22 -5.60 5.24 -19.74 -0.10 -5.71 16 8 C 0.23 6.59 2.84 44.25 0.13 6.72 16 9 H 0.08 2.52 6.79 -2.38 -0.02 2.51 16 10 C -0.15 -3.78 9.47 71.98 0.68 -3.10 16 11 N -0.72 -23.42 4.85 -449.36 -2.18 -25.60 16 12 C 0.56 25.05 7.68 86.66 0.67 25.71 16 13 O -0.57 -29.79 13.26 -4.05 -0.05 -29.85 16 14 C -0.28 -13.12 5.92 -19.70 -0.12 -13.23 16 15 C -0.05 -2.05 9.52 22.50 0.21 -1.84 16 16 C -0.23 -8.72 10.03 22.41 0.22 -8.49 16 17 C -0.09 -3.91 10.01 22.26 0.22 -3.69 16 18 C -0.18 -8.96 8.62 22.72 0.20 -8.77 16 19 C 0.12 6.24 5.51 -21.11 -0.12 6.12 16 20 C -0.46 -25.70 7.67 23.41 0.18 -25.52 16 21 H 0.08 4.93 5.93 -2.91 -0.02 4.92 16 22 C 0.03 1.68 5.25 85.37 0.45 2.13 16 23 N -0.82 -43.84 11.13 21.88 0.24 -43.60 16 24 Si 0.98 41.25 29.57 68.60 2.03 43.28 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 27 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 1.76 7.45 -2.39 -0.02 1.75 16 31 H 0.11 1.14 7.78 -2.38 -0.02 1.12 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 1.30 6.41 -2.39 -0.02 1.28 16 34 H 0.08 1.57 6.81 -2.38 -0.02 1.56 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.40 10.60 4.17 -92.70 -0.39 10.21 16 38 H 0.13 3.69 6.44 -2.91 -0.02 3.67 16 39 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 40 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 41 H 0.10 5.25 6.58 -2.91 -0.02 5.23 16 42 H 0.29 13.87 8.29 -92.71 -0.77 13.11 16 Total: -1.00 -69.21 348.35 5.41 -63.81 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.68 Total: 30.33 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 4.48 Total: -30.14 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.53 Total: -80.48 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: 0.75 Total: -26.80 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -69.21 5.41 -63.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601172706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.444 kcal (2) G-P(sol) polarization free energy of solvation -69.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds