Wall clock time and date at job start Tue Mar 31 2020 11:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30173 * 126.80296 * 2 1 4 4 O 1.20923 * 111.60530 * 179.97438 * 3 2 1 5 5 C 1.34041 * 111.56366 * 359.77322 * 4 3 2 6 6 C 1.50706 * 126.77363 * 180.28494 * 5 4 3 7 7 C 1.35445 * 106.44701 * 0.37402 * 5 4 3 8 8 C 1.50704 * 128.00820 * 179.91384 * 7 5 4 9 9 H 1.08995 * 109.47314 * 179.67864 * 8 7 5 10 10 C 1.53000 * 109.46966 * 299.68174 * 8 7 5 11 11 C 1.50701 * 109.46807 * 59.67534 * 8 7 5 12 12 O 1.21277 * 120.00447 * 0.02562 * 11 8 7 13 13 N 1.34780 * 119.99745 * 180.02562 * 11 8 7 14 14 C 1.39236 * 119.99919 * 175.47958 * 13 11 8 15 15 C 1.39489 * 119.83705 * 35.98106 * 14 13 11 16 16 C 1.36367 * 120.17418 * 179.72602 * 15 14 13 17 17 C 1.40880 * 119.82610 * 0.27672 * 16 15 14 18 18 C 1.41148 * 120.16205 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99383 * 204.69807 * 18 17 16 20 20 C 1.39902 * 120.00250 * 24.69708 * 18 17 16 21 21 N 1.30871 * 119.99955 * 15.53684 * 20 18 17 22 22 Si 1.86797 * 120.00047 * 195.53335 * 20 18 17 23 23 H 1.48511 * 109.47152 * 60.00036 * 22 20 18 24 24 H 1.48498 * 109.47323 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47515 * 300.00459 * 22 20 18 26 26 C 1.40868 * 119.67114 * 359.97438 * 17 16 15 27 27 C 1.36372 * 119.83059 * 0.02562 * 26 17 16 28 28 H 1.09006 * 109.47096 * 270.01892 * 1 2 3 29 29 H 1.09007 * 109.47386 * 30.01240 * 1 2 3 30 30 H 1.08995 * 109.47398 * 150.01852 * 1 2 3 31 31 H 1.08999 * 109.46816 * 270.10526 * 6 5 4 32 32 H 1.08993 * 109.47158 * 30.10427 * 6 5 4 33 33 H 1.08998 * 109.46937 * 150.10834 * 6 5 4 34 34 H 1.08996 * 109.46959 * 299.99518 * 10 8 7 35 35 H 1.08995 * 109.47357 * 59.99717 * 10 8 7 36 36 H 1.09002 * 109.46890 * 179.97438 * 10 8 7 37 37 H 0.96991 * 120.00317 * 355.47102 * 13 11 8 38 38 H 1.08000 * 119.91326 * 0.02562 * 15 14 13 39 39 H 1.07997 * 120.09357 * 180.29455 * 16 15 14 40 40 H 0.97003 * 119.99905 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.08885 * 180.02562 * 26 17 16 42 42 H 1.08001 * 119.92081 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6068 0.0058 6 6 4.9021 -1.3696 0.0141 7 6 2.3539 -1.1320 0.0004 8 6 1.9589 -2.5864 0.0012 9 1 0.8720 -2.6677 0.0014 10 6 2.5211 -3.2682 -1.2478 11 6 2.5132 -3.2567 1.2319 12 8 3.1643 -2.6164 2.0299 13 7 2.2852 -4.5677 1.4456 14 6 2.8748 -5.2088 2.5319 15 6 3.0361 -4.5254 3.7372 16 6 3.6076 -5.1484 4.8072 17 6 4.0407 -6.4839 4.6913 18 6 4.6326 -7.1358 5.7945 19 1 5.3062 -7.9646 5.6341 20 6 4.3467 -6.7083 7.0956 21 7 3.3212 -5.9260 7.3168 22 14 5.4289 -7.2541 8.5170 23 1 6.8210 -6.7918 8.2852 24 1 4.9167 -6.6690 9.7821 25 1 5.4091 -8.7358 8.6137 26 6 3.8792 -7.1658 3.4693 27 6 3.3059 -6.5296 2.4080 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8899 -0.5140 30 1 -0.3634 -0.8901 -0.5135 31 1 5.2208 -1.5555 -1.0116 32 1 5.6632 -0.7850 0.5307 33 1 4.7623 -2.3201 0.5290 34 1 2.1203 -2.7834 -2.1379 35 1 3.6081 -3.1869 -1.2480 36 1 2.2358 -4.3202 -1.2470 37 1 1.7104 -5.0647 0.8428 38 1 2.7032 -3.5017 3.8246 39 1 3.7275 -4.6195 5.7412 40 1 3.1227 -5.6299 8.2189 41 1 4.2084 -8.1899 3.3731 42 1 3.1810 -7.0511 1.4706 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604547954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:43 Heat of formation + Delta-G solvation = 35.473534 kcal Electronic energy + Delta-G solvation = -25719.930358 eV Core-core repulsion = 22053.745931 eV Total energy + Delta-G solvation = -3666.184426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -44.84905 -39.91434 -37.48465 -35.60971 -34.50351 -33.83197 -33.06976 -31.59095 -29.51033 -28.92609 -28.67643 -27.74454 -25.43064 -24.47886 -22.36354 -21.32234 -20.82079 -20.20319 -19.18512 -17.63039 -17.36525 -17.12081 -16.82752 -16.08911 -15.26816 -15.13054 -14.56813 -14.11391 -13.84696 -13.58605 -13.47096 -13.28025 -13.16340 -13.00499 -12.77371 -12.75493 -12.39704 -12.34050 -12.24421 -11.98384 -11.82188 -11.38046 -11.36068 -11.12261 -11.10586 -10.86572 -10.69058 -9.97201 -9.85098 -9.69129 -9.38853 -9.10239 -9.03082 -8.81714 -7.54598 -7.03745 -6.74899 -4.33666 1.55659 2.20473 2.55440 2.97340 3.05567 3.08033 3.09867 3.16458 3.31066 3.74961 3.91206 4.15205 4.47277 4.59331 4.63302 4.80017 4.98191 5.14596 5.24055 5.34860 5.36955 5.44143 5.47676 5.52291 5.66336 5.67806 5.75329 5.85337 5.93650 6.04838 6.11603 6.20253 6.38058 6.78044 6.97235 7.02458 7.13607 7.26721 7.57741 7.65484 7.94858 8.03169 8.17963 8.28959 8.33887 8.60951 8.72953 8.86097 8.98119 10.16109 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021192 B = 0.003068 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.957826 B = 9125.146622 C = 9523.445406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.026 3.974 3 N -0.373 5.373 4 O 0.090 5.910 5 C 0.008 3.992 6 C -0.079 4.079 7 C -0.188 4.188 8 C -0.030 4.030 9 H 0.104 0.896 10 C -0.143 4.143 11 C 0.501 3.499 12 O -0.520 6.520 13 N -0.648 5.648 14 C -0.010 4.010 15 C -0.085 4.085 16 C -0.157 4.157 17 C 0.106 3.894 18 C -0.457 4.457 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.791 5.791 22 Si 0.910 3.090 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.265 1.265 26 C -0.217 4.217 27 C -0.103 4.103 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.393 0.607 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.282 0.718 41 H 0.095 0.905 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 5.466 -14.751 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.133 4.133 3 N -0.081 5.081 4 O 0.028 5.972 5 C -0.056 4.056 6 C -0.136 4.136 7 C -0.192 4.192 8 C -0.052 4.052 9 H 0.122 0.878 10 C -0.200 4.200 11 C 0.287 3.713 12 O -0.396 6.396 13 N -0.290 5.290 14 C -0.102 4.102 15 C -0.105 4.105 16 C -0.177 4.177 17 C 0.103 3.897 18 C -0.487 4.487 19 H 0.096 0.904 20 C -0.144 4.144 21 N -0.416 5.416 22 Si 0.734 3.266 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.190 1.190 26 C -0.237 4.237 27 C -0.123 4.123 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.227 0.773 38 H 0.123 0.877 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.350 7.379 -13.991 16.168 hybrid contribution -0.083 -1.288 0.493 1.382 sum -3.433 6.091 -13.498 15.201 Atomic orbital electron populations 1.20158 0.86230 1.03425 1.03474 1.23335 0.98670 0.88556 1.02716 1.73795 0.89313 1.23890 1.21053 1.84763 1.21567 1.22746 1.68151 1.24135 0.98307 0.83174 0.99940 1.20511 0.90012 0.99988 1.03070 1.20195 0.91920 0.95520 1.11559 1.19502 1.01918 0.88957 0.94841 0.87816 1.21826 1.02179 1.00384 0.95641 1.20325 0.81352 0.82538 0.87098 1.90703 1.39429 1.63472 1.46001 1.42920 1.48335 1.09391 1.28396 1.17163 1.11715 0.93931 0.87429 1.20533 0.99907 0.98683 0.91339 1.21067 1.03933 0.94790 0.97918 1.17673 0.89120 0.91176 0.91703 1.19542 1.24197 1.14691 0.90226 0.90445 1.25934 0.94214 0.93639 1.00651 1.69824 1.21842 1.26549 1.23433 0.86338 0.81087 0.79794 0.79333 1.18789 1.20309 1.19012 1.20537 1.09394 0.98737 0.95028 1.20032 1.00960 0.93698 0.97585 0.90122 0.90619 0.90188 0.89997 0.89912 0.87921 0.91470 0.91591 0.91319 0.77309 0.87742 0.86014 0.90751 0.88695 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.26 36.01 0.37 -0.37 16 2 C 0.03 0.36 7.33 -82.10 -0.60 -0.24 16 3 N -0.37 -5.74 12.07 33.42 0.40 -5.34 16 4 O 0.09 1.36 11.20 17.17 0.19 1.55 16 5 C 0.01 0.11 6.85 -35.30 -0.24 -0.13 16 6 C -0.08 -0.93 8.72 36.01 0.31 -0.62 16 7 C -0.19 -2.55 4.55 -104.42 -0.48 -3.02 16 8 C -0.03 -0.35 2.99 -92.92 -0.28 -0.63 16 9 H 0.10 1.00 7.34 -51.93 -0.38 0.62 16 10 C -0.14 -1.28 8.98 37.16 0.33 -0.95 16 11 C 0.50 8.08 6.15 -10.98 -0.07 8.01 16 12 O -0.52 -10.54 11.35 5.56 0.06 -10.48 16 13 N -0.65 -10.52 5.16 -9.73 -0.05 -10.57 16 14 C -0.01 -0.22 6.29 -83.57 -0.53 -0.74 16 15 C -0.08 -2.06 8.61 -39.79 -0.34 -2.40 16 16 C -0.16 -4.15 8.64 -39.26 -0.34 -4.49 16 17 C 0.11 2.79 5.58 -106.80 -0.60 2.19 16 18 C -0.46 -11.96 9.05 -37.86 -0.34 -12.30 16 19 H 0.08 1.93 7.89 -52.48 -0.41 1.51 16 20 C 0.07 1.83 5.18 -17.34 -0.09 1.74 16 21 N -0.79 -20.43 10.82 55.55 0.60 -19.82 16 22 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 23 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 24 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 C -0.22 -5.11 9.74 -39.26 -0.38 -5.49 16 27 C -0.10 -2.15 9.90 -39.79 -0.39 -2.55 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.60 7.55 -51.93 -0.39 0.21 16 31 H 0.08 0.73 8.03 -51.93 -0.42 0.31 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.45 5.53 -51.93 -0.29 1.16 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.62 6.51 -51.93 -0.34 0.29 16 36 H 0.07 0.52 7.67 -51.93 -0.40 0.12 16 37 H 0.39 4.89 8.38 -40.82 -0.34 4.55 16 38 H 0.10 2.59 6.27 -52.49 -0.33 2.26 16 39 H 0.12 3.37 6.07 -52.49 -0.32 3.05 16 40 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 41 H 0.09 2.09 8.06 -52.48 -0.42 1.66 16 42 H 0.09 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 348.56 15.07 5.25 5.25 Total: -1.00 -30.98 348.56 -7.52 -38.50 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.29 Total: 9.37 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -3.66 Total: -21.99 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.95 Total: -35.73 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.26 Total: -8.93 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.98 -7.52 -38.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604547954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.971 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds