Wall clock time and date at job start Tue Mar 31 2020 11:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30173 * 126.80296 * 2 1 4 4 O 1.20923 * 111.60530 * 179.97438 * 3 2 1 5 5 C 1.34041 * 111.56366 * 359.77322 * 4 3 2 6 6 C 1.50706 * 126.77363 * 180.28494 * 5 4 3 7 7 C 1.35445 * 106.44701 * 0.37402 * 5 4 3 8 8 C 1.50704 * 128.00820 * 179.91384 * 7 5 4 9 9 H 1.08995 * 109.47314 * 179.67864 * 8 7 5 10 10 C 1.53000 * 109.46966 * 299.68174 * 8 7 5 11 11 C 1.50701 * 109.46807 * 59.67534 * 8 7 5 12 12 O 1.21277 * 120.00447 * 0.02562 * 11 8 7 13 13 N 1.34780 * 119.99745 * 180.02562 * 11 8 7 14 14 C 1.39236 * 119.99919 * 175.47958 * 13 11 8 15 15 C 1.39489 * 119.83705 * 35.98106 * 14 13 11 16 16 C 1.36367 * 120.17418 * 179.72602 * 15 14 13 17 17 C 1.40880 * 119.82610 * 0.27672 * 16 15 14 18 18 C 1.41148 * 120.16205 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99383 * 204.69807 * 18 17 16 20 20 C 1.39902 * 120.00250 * 24.69708 * 18 17 16 21 21 N 1.30871 * 119.99955 * 15.53684 * 20 18 17 22 22 Si 1.86797 * 120.00047 * 195.53335 * 20 18 17 23 23 H 1.48511 * 109.47152 * 60.00036 * 22 20 18 24 24 H 1.48498 * 109.47323 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47515 * 300.00459 * 22 20 18 26 26 C 1.40868 * 119.67114 * 359.97438 * 17 16 15 27 27 C 1.36372 * 119.83059 * 0.02562 * 26 17 16 28 28 H 1.09006 * 109.47096 * 270.01892 * 1 2 3 29 29 H 1.09007 * 109.47386 * 30.01240 * 1 2 3 30 30 H 1.08995 * 109.47398 * 150.01852 * 1 2 3 31 31 H 1.08999 * 109.46816 * 270.10526 * 6 5 4 32 32 H 1.08993 * 109.47158 * 30.10427 * 6 5 4 33 33 H 1.08998 * 109.46937 * 150.10834 * 6 5 4 34 34 H 1.08996 * 109.46959 * 299.99518 * 10 8 7 35 35 H 1.08995 * 109.47357 * 59.99717 * 10 8 7 36 36 H 1.09002 * 109.46890 * 179.97438 * 10 8 7 37 37 H 0.96991 * 120.00317 * 355.47102 * 13 11 8 38 38 H 1.08000 * 119.91326 * 0.02562 * 15 14 13 39 39 H 1.07997 * 120.09357 * 180.29455 * 16 15 14 40 40 H 0.97003 * 119.99905 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.08885 * 180.02562 * 26 17 16 42 42 H 1.08001 * 119.92081 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6068 0.0058 6 6 4.9021 -1.3696 0.0141 7 6 2.3539 -1.1320 0.0004 8 6 1.9589 -2.5864 0.0012 9 1 0.8720 -2.6677 0.0014 10 6 2.5211 -3.2682 -1.2478 11 6 2.5132 -3.2567 1.2319 12 8 3.1643 -2.6164 2.0299 13 7 2.2852 -4.5677 1.4456 14 6 2.8748 -5.2088 2.5319 15 6 3.0361 -4.5254 3.7372 16 6 3.6076 -5.1484 4.8072 17 6 4.0407 -6.4839 4.6913 18 6 4.6326 -7.1358 5.7945 19 1 5.3062 -7.9646 5.6341 20 6 4.3467 -6.7083 7.0956 21 7 3.3212 -5.9260 7.3168 22 14 5.4289 -7.2541 8.5170 23 1 6.8210 -6.7918 8.2852 24 1 4.9167 -6.6690 9.7821 25 1 5.4091 -8.7358 8.6137 26 6 3.8792 -7.1658 3.4693 27 6 3.3059 -6.5296 2.4080 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8899 -0.5140 30 1 -0.3634 -0.8901 -0.5135 31 1 5.2208 -1.5555 -1.0116 32 1 5.6632 -0.7850 0.5307 33 1 4.7623 -2.3201 0.5290 34 1 2.1203 -2.7834 -2.1379 35 1 3.6081 -3.1869 -1.2480 36 1 2.2358 -4.3202 -1.2470 37 1 1.7104 -5.0647 0.8428 38 1 2.7032 -3.5017 3.8246 39 1 3.7275 -4.6195 5.7412 40 1 3.1227 -5.6299 8.2189 41 1 4.2084 -8.1899 3.3731 42 1 3.1810 -7.0511 1.4706 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604547954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:41 Heat of formation + Delta-G solvation = 17.542406 kcal Electronic energy + Delta-G solvation = -25720.707910 eV Core-core repulsion = 22053.745931 eV Total energy + Delta-G solvation = -3666.961978 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.90156 -41.31657 -39.18169 -36.75945 -36.10616 -34.88724 -34.68779 -32.65931 -31.36667 -30.64012 -29.58064 -28.68886 -27.00306 -25.60654 -23.73628 -23.09846 -22.23156 -21.42336 -20.48277 -19.23455 -18.73722 -18.42890 -17.99990 -17.46628 -17.01754 -16.36602 -15.79841 -15.62391 -15.37253 -14.74234 -14.51808 -14.42164 -14.25792 -14.21200 -13.93692 -13.92051 -13.67383 -13.59567 -13.38790 -13.25863 -13.12535 -12.98227 -12.82517 -12.74884 -12.39148 -12.19466 -11.88524 -11.71054 -11.47213 -11.11595 -10.87908 -10.73131 -10.44602 -10.05364 -9.41532 -8.83774 -8.57695 -6.26756 0.49611 0.85150 1.17911 1.18769 1.37845 1.46837 1.50534 1.83426 2.14453 2.20804 2.46209 2.77211 3.21119 3.51958 3.70010 3.73932 3.82939 4.11852 4.17834 4.36615 4.47602 4.49560 4.52315 4.59543 4.62812 4.65383 4.75185 4.89994 4.93519 4.98826 5.02338 5.11308 5.12626 5.21594 5.23793 5.33578 5.36192 5.47751 5.71291 5.91541 6.11577 6.14825 6.37256 6.71091 6.78586 6.94638 7.03823 7.28295 7.47127 8.34108 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021192 B = 0.003068 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.957826 B = 9125.146622 C = 9523.445406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.024 3.976 3 N -0.402 5.402 4 O 0.071 5.929 5 C -0.003 4.003 6 C -0.075 4.075 7 C -0.200 4.200 8 C -0.017 4.017 9 H 0.135 0.865 10 C -0.141 4.141 11 C 0.501 3.499 12 O -0.565 6.565 13 N -0.639 5.639 14 C 0.011 3.989 15 C -0.099 4.099 16 C -0.183 4.183 17 C 0.073 3.927 18 C -0.495 4.495 19 H 0.080 0.920 20 C 0.030 3.970 21 N -0.828 5.828 22 Si 0.982 3.018 23 H -0.262 1.262 24 H -0.271 1.271 25 H -0.255 1.255 26 C -0.224 4.224 27 C -0.096 4.096 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.418 0.582 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.286 0.714 41 H 0.109 0.891 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.379 4.238 -17.285 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 N -0.113 5.113 4 O 0.012 5.988 5 C -0.066 4.066 6 C -0.132 4.132 7 C -0.204 4.204 8 C -0.039 4.039 9 H 0.153 0.847 10 C -0.198 4.198 11 C 0.290 3.710 12 O -0.443 6.443 13 N -0.284 5.284 14 C -0.082 4.082 15 C -0.119 4.119 16 C -0.204 4.204 17 C 0.070 3.930 18 C -0.525 4.525 19 H 0.098 0.902 20 C -0.184 4.184 21 N -0.455 5.455 22 Si 0.803 3.197 23 H -0.187 1.187 24 H -0.195 1.195 25 H -0.179 1.179 26 C -0.244 4.244 27 C -0.116 4.116 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.256 0.744 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.127 0.873 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.247 6.136 -16.577 18.179 hybrid contribution 0.125 -0.811 1.113 1.383 sum -4.122 5.325 -15.464 16.866 Atomic orbital electron populations 1.20358 0.83656 1.05405 1.04019 1.23993 1.00353 0.88085 1.01040 1.73784 0.89650 1.25077 1.22783 1.84726 1.21772 1.23402 1.68870 1.24592 0.99456 0.83018 0.99523 1.20534 0.89346 0.98533 1.04806 1.20522 0.91743 0.96515 1.11616 1.19552 1.03488 0.87386 0.93461 0.84750 1.21883 1.01771 1.01526 0.94618 1.21167 0.80132 0.81982 0.87767 1.90707 1.41260 1.64409 1.47927 1.42806 1.48505 1.09717 1.27351 1.17198 1.09542 0.93970 0.87524 1.20539 1.00546 0.98346 0.92513 1.20936 1.06196 0.95436 0.97783 1.17991 0.90310 0.91362 0.93314 1.19818 1.25527 1.15780 0.91326 0.90187 1.26799 0.95117 0.93440 1.03031 1.69907 1.23431 1.27942 1.24194 0.85247 0.78804 0.79745 0.75898 1.18674 1.19545 1.17896 1.20823 1.09286 0.99481 0.94808 1.20408 0.99065 0.93434 0.98664 0.90116 0.89677 0.87268 0.86759 0.89814 0.90016 0.89375 0.92301 0.89207 0.74431 0.89025 0.88715 0.90380 0.87295 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.26 71.24 0.73 -0.58 16 2 C 0.02 0.63 7.33 43.58 0.32 0.95 16 3 N -0.40 -12.27 12.07 -49.56 -0.60 -12.86 16 4 O 0.07 2.17 11.20 71.62 0.80 2.97 16 5 C 0.00 -0.07 6.85 25.04 0.17 0.10 16 6 C -0.08 -1.72 8.72 71.24 0.62 -1.10 16 7 C -0.20 -5.06 4.55 -19.74 -0.09 -5.15 16 8 C -0.02 -0.35 2.99 -12.28 -0.04 -0.38 16 9 H 0.13 1.93 7.34 -2.39 -0.02 1.91 16 10 C -0.14 -1.90 8.98 71.98 0.65 -1.25 16 11 C 0.50 15.15 6.15 87.66 0.54 15.69 16 12 O -0.56 -22.90 11.35 -3.02 -0.03 -22.93 16 13 N -0.64 -18.83 5.16 -303.10 -1.56 -20.40 16 14 C 0.01 0.46 6.29 38.57 0.24 0.70 16 15 C -0.10 -4.95 8.61 22.13 0.19 -4.76 16 16 C -0.18 -10.16 8.64 22.48 0.19 -9.97 16 17 C 0.07 3.94 5.58 -21.27 -0.12 3.82 16 18 C -0.50 -26.78 9.05 23.39 0.21 -26.57 16 19 H 0.08 4.10 7.89 -2.91 -0.02 4.07 16 20 C 0.03 1.56 5.18 85.24 0.44 2.00 16 21 N -0.83 -44.77 10.82 21.82 0.24 -44.53 16 22 Si 0.98 38.88 29.59 68.60 2.03 40.91 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 26 C -0.22 -10.40 9.74 22.48 0.22 -10.18 16 27 C -0.10 -3.77 9.90 22.14 0.22 -3.55 16 28 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.11 1.18 7.55 -2.39 -0.02 1.16 16 31 H 0.11 1.80 8.03 -2.39 -0.02 1.78 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 2.27 5.53 -2.39 -0.01 2.25 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.90 6.51 -2.39 -0.02 0.89 16 36 H 0.09 0.86 7.67 -2.39 -0.02 0.84 16 37 H 0.42 8.41 8.38 -92.71 -0.78 7.64 16 38 H 0.09 4.74 6.27 -2.91 -0.02 4.72 16 39 H 0.09 5.65 6.07 -2.91 -0.02 5.63 16 40 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 41 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -72.40 348.56 5.66 -66.73 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.29 Total: 30.34 kcal Atomic # 6 Polarization: -44.73 SS G_CDS: 4.50 Total: -40.23 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -1.93 Total: -77.80 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.77 Total: -19.96 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -72.40 5.66 -66.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604547954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.276 kcal (2) G-P(sol) polarization free energy of solvation -72.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds