Wall clock time and date at job start Tue Mar 31 2020 11:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 110.45432 * 2 1 4 4 C 1.34773 * 120.00078 * 62.63558 * 3 2 1 5 5 O 1.21665 * 119.99933 * 5.20223 * 4 3 2 6 6 C 1.46889 * 119.99796 * 185.19861 * 4 3 2 7 7 C 1.36125 * 125.43490 * 185.96400 * 6 4 3 8 8 C 1.41704 * 107.74865 * 180.25899 * 7 6 4 9 9 C 1.40022 * 133.35398 * 179.81068 * 8 7 6 10 10 C 1.36577 * 119.83256 * 179.97438 * 9 8 7 11 11 C 1.38858 * 120.59749 * 359.95003 * 10 9 8 12 12 C 1.37843 * 120.63566 * 0.02562 * 11 10 9 13 13 C 1.39089 * 119.81294 * 0.02562 * 12 11 10 14 14 N 1.37836 * 133.16398 * 180.02562 * 13 12 11 15 15 C 1.36897 * 125.61689 * 359.96745 * 14 13 12 16 16 H 1.07999 * 120.00043 * 224.59627 * 15 14 13 17 17 C 1.39016 * 119.99917 * 44.60116 * 15 14 13 18 18 N 1.31347 * 119.99693 * 198.60861 * 17 15 14 19 19 Si 1.86799 * 120.00018 * 18.60127 * 17 15 14 20 20 H 1.48501 * 109.47419 * 264.69891 * 19 17 15 21 21 H 1.48505 * 109.47081 * 24.69791 * 19 17 15 22 22 H 1.48495 * 109.46961 * 144.69522 * 19 17 15 23 23 C 1.54508 * 110.51010 * 237.39760 * 2 1 3 24 24 C 1.54477 * 104.05922 * 241.21453 * 23 2 1 25 25 O 1.44425 * 104.80510 * 23.98260 * 24 23 2 26 26 C 1.44428 * 105.26892 * 319.48397 * 25 24 23 27 27 H 1.09003 * 109.46938 * 60.69926 * 1 2 3 28 28 H 1.08993 * 109.46678 * 180.70186 * 1 2 3 29 29 H 1.08997 * 109.46571 * 300.70381 * 1 2 3 30 30 H 0.96999 * 119.99742 * 242.63450 * 3 2 1 31 31 H 1.07997 * 126.12864 * 0.02562 * 7 6 4 32 32 H 1.07995 * 120.08137 * 359.93556 * 9 8 7 33 33 H 1.07996 * 119.69903 * 179.97438 * 10 9 8 34 34 H 1.08004 * 119.67678 * 180.02562 * 11 10 9 35 35 H 1.08000 * 120.09168 * 180.02562 * 12 11 10 36 36 H 0.97000 * 119.99874 * 174.98483 * 18 17 15 37 37 H 1.08996 * 110.50995 * 359.85818 * 23 2 1 38 38 H 1.09004 * 110.51264 * 122.57113 * 23 2 1 39 39 H 1.09008 * 110.37310 * 142.80846 * 24 23 2 40 40 H 1.08998 * 110.37631 * 265.03144 * 24 23 2 41 41 H 1.08997 * 110.37173 * 281.67831 * 26 25 24 42 42 H 1.09004 * 110.36662 * 159.34873 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0421 1.3727 0.0000 4 6 1.7749 2.1915 1.0366 5 8 1.1903 1.7643 2.0143 6 6 2.1896 3.5998 0.9858 7 6 2.0811 4.4918 2.0083 8 6 2.5853 5.7351 1.5523 9 6 2.7231 6.9939 2.1497 10 6 3.2601 8.0286 1.4382 11 6 3.6730 7.8443 0.1252 12 6 3.5481 6.6143 -0.4843 13 6 3.0031 5.5458 0.2198 14 7 2.7547 4.2299 -0.1067 15 6 3.0203 3.6446 -1.3154 16 1 2.2857 3.0012 -1.7769 17 6 4.2354 3.8784 -1.9489 18 7 4.3630 3.6384 -3.2339 19 14 5.6868 4.5340 -0.9725 20 1 5.7450 6.0120 -1.1044 21 1 5.5254 4.1706 0.4583 22 1 6.9436 3.9404 -1.4952 23 6 2.0714 -0.7797 -1.2191 24 6 2.8787 -1.9393 -0.5946 25 8 2.3119 -2.1165 0.7219 26 6 2.0743 -0.7806 1.2167 27 1 -0.3633 0.5030 -0.8962 28 1 -0.3632 -1.0275 0.0126 29 1 -0.3632 0.5247 0.8836 30 1 2.5733 1.6921 -0.7460 31 1 1.6789 4.2893 2.9900 32 1 2.4048 7.1465 3.1704 33 1 3.3650 8.9987 1.9009 34 1 4.0961 8.6727 -0.4235 35 1 3.8724 6.4807 -1.5057 36 1 5.1868 3.8693 -3.6910 37 1 1.2491 -1.1673 -1.8204 38 1 2.7200 -0.1439 -1.8218 39 1 2.7575 -2.8474 -1.1853 40 1 3.9331 -1.6722 -0.5229 41 1 3.0049 -0.3351 1.5681 42 1 1.3351 -0.7986 2.0176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611124242.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:19 Heat of formation + Delta-G solvation = -13.340423 kcal Electronic energy + Delta-G solvation = -26915.312178 eV Core-core repulsion = 23247.011020 eV Total energy + Delta-G solvation = -3668.301158 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -40.95011 -39.95544 -38.09046 -36.24919 -34.69880 -33.65293 -31.52966 -31.14699 -29.68512 -29.19926 -28.16965 -26.21776 -25.03466 -23.61905 -22.66747 -21.23970 -20.78988 -19.53984 -19.23786 -18.50220 -16.78133 -16.49442 -15.92747 -15.80332 -15.23707 -15.12920 -14.67536 -14.33949 -14.27427 -14.00779 -13.63728 -13.39965 -13.34696 -13.15496 -12.89492 -12.42744 -12.25900 -12.16445 -12.10806 -11.72130 -11.50641 -11.33025 -11.08555 -11.05071 -10.88141 -10.79827 -10.58732 -10.36430 -9.99302 -9.67585 -9.59108 -9.43368 -8.81627 -8.61766 -7.46256 -7.10648 -7.00707 -4.82959 1.51852 2.39991 2.75908 2.91756 3.03675 3.11308 3.56412 3.75163 3.97536 4.05313 4.21302 4.47944 4.54667 4.68218 4.88789 4.98894 5.24029 5.34310 5.43175 5.56162 5.63700 5.70021 5.76691 5.81123 5.92215 5.93426 5.96804 6.02149 6.11353 6.16006 6.17763 6.34521 6.42672 6.53402 6.68537 6.74513 6.76544 7.04406 7.05548 7.16549 7.26876 7.44098 7.55969 7.61555 7.97704 8.12741 8.47926 8.80383 8.90918 9.92636 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016285 B = 0.005318 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.990538 B = 5264.256336 C = 6378.784273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.143 3.857 3 N -0.717 5.717 4 C 0.597 3.403 5 O -0.551 6.551 6 C -0.013 4.013 7 C -0.157 4.157 8 C -0.126 4.126 9 C -0.075 4.075 10 C -0.160 4.160 11 C -0.128 4.128 12 C -0.104 4.104 13 C 0.066 3.934 14 N -0.276 5.276 15 C -0.378 4.378 16 H 0.123 0.877 17 C 0.088 3.912 18 N -0.821 5.821 19 Si 0.871 3.129 20 H -0.245 1.245 21 H -0.253 1.253 22 H -0.280 1.280 23 C -0.159 4.159 24 C 0.046 3.954 25 O -0.378 6.378 26 C 0.049 3.951 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.420 0.580 31 H 0.139 0.861 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.290 0.710 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 -2.526 2.072 3.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.056 3.944 3 N -0.378 5.378 4 C 0.386 3.614 5 O -0.430 6.430 6 C -0.128 4.128 7 C -0.184 4.184 8 C -0.131 4.131 9 C -0.094 4.094 10 C -0.179 4.179 11 C -0.148 4.148 12 C -0.124 4.124 13 C -0.048 4.048 14 N 0.059 4.941 15 C -0.504 4.504 16 H 0.140 0.860 17 C -0.128 4.128 18 N -0.449 5.449 19 Si 0.695 3.305 20 H -0.169 1.169 21 H -0.176 1.176 22 H -0.206 1.206 23 C -0.197 4.197 24 C -0.031 4.031 25 O -0.296 6.296 26 C -0.028 4.028 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.267 0.733 31 H 0.157 0.843 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.181 -3.375 2.263 4.232 hybrid contribution 1.115 0.734 -0.429 1.402 sum -0.066 -2.641 1.834 3.216 Atomic orbital electron populations 1.22109 0.93299 1.02249 1.03339 1.21576 0.95011 0.82814 0.95030 1.46916 1.55128 1.11212 1.24594 1.17198 0.77852 0.83968 0.82340 1.90707 1.43102 1.76285 1.32893 1.20232 1.10936 0.92770 0.88821 1.20481 1.08152 0.91408 0.98399 1.18020 1.06425 0.94426 0.94250 1.20186 0.99265 0.91281 0.98679 1.20368 1.04129 0.98310 0.95106 1.20605 1.02864 0.95928 0.95424 1.20181 1.01156 0.91409 0.99655 1.18441 1.05399 0.85497 0.95466 1.40250 1.40541 1.04695 1.08645 1.19187 1.03288 1.33633 0.94307 0.85975 1.25487 0.98261 0.93741 0.95268 1.69634 1.28600 1.38876 1.07821 0.86886 0.80520 0.81187 0.81938 1.16935 1.17640 1.20639 1.23250 1.01183 0.97721 0.97536 1.23376 0.97038 0.98413 0.84296 1.89107 1.83103 1.26465 1.30914 1.23823 1.00831 0.81731 0.96457 0.92270 0.91616 0.90653 0.73277 0.84345 0.87052 0.87199 0.86928 0.86413 0.89961 0.89515 0.89202 0.89042 0.92156 0.91979 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.26 37.16 0.31 -1.97 16 2 C 0.14 2.27 1.02 -130.25 -0.13 2.14 16 3 N -0.72 -13.45 4.91 -47.38 -0.23 -13.68 16 4 C 0.60 12.54 7.23 -12.76 -0.09 12.45 16 5 O -0.55 -11.89 14.27 5.22 0.07 -11.82 16 6 C -0.01 -0.30 6.77 -82.25 -0.56 -0.85 16 7 C -0.16 -3.36 10.55 -39.02 -0.41 -3.77 16 8 C -0.13 -2.70 6.16 -106.89 -0.66 -3.35 16 9 C -0.08 -1.37 10.06 -39.51 -0.40 -1.77 16 10 C -0.16 -2.72 9.97 -39.95 -0.40 -3.12 16 11 C -0.13 -2.33 10.02 -39.50 -0.40 -2.73 16 12 C -0.10 -2.21 6.89 -39.41 -0.27 -2.49 16 13 C 0.07 1.50 5.16 -83.83 -0.43 1.07 16 14 N -0.28 -6.44 2.38 -56.08 -0.13 -6.57 16 15 C -0.38 -8.92 8.02 -15.00 -0.12 -9.04 16 16 H 0.12 2.94 6.74 -52.49 -0.35 2.58 16 17 C 0.09 2.08 4.93 -17.47 -0.09 1.99 16 18 N -0.82 -19.62 13.95 55.50 0.77 -18.85 16 19 Si 0.87 19.14 24.41 -169.99 -4.15 14.99 16 20 H -0.25 -5.18 5.74 56.52 0.32 -4.85 16 21 H -0.25 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 C -0.16 -2.15 6.52 -25.16 -0.16 -2.31 16 24 C 0.05 0.59 7.63 37.93 0.29 0.88 16 25 O -0.38 -5.82 11.65 -35.23 -0.41 -6.23 16 26 C 0.05 0.80 5.58 37.93 0.21 1.01 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.26 6.61 -51.93 -0.34 0.92 16 30 H 0.42 8.26 4.24 -40.82 -0.17 8.09 16 31 H 0.14 2.69 8.06 -52.49 -0.42 2.27 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 35 H 0.12 2.54 6.05 -52.49 -0.32 2.22 16 36 H 0.29 6.42 8.31 -40.82 -0.34 6.08 16 37 H 0.09 1.02 7.73 -51.93 -0.40 0.62 16 38 H 0.09 1.27 7.53 -51.93 -0.39 0.87 16 39 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.07 8.05 -51.93 -0.42 0.66 16 42 H 0.10 1.69 7.64 -51.93 -0.40 1.29 16 LS Contribution 334.00 15.07 5.03 5.03 Total: -1.00 -26.30 334.00 -7.74 -34.04 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -5.39 Total: 14.94 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -3.31 Total: -11.87 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.41 Total: -39.10 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.34 Total: -18.04 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.15 Total: 14.99 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.30 -7.74 -34.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611124242.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.703 kcal (2) G-P(sol) polarization free energy of solvation -26.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds