Wall clock time and date at job start Tue Mar 31 2020 11:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 110.45432 * 2 1 4 4 C 1.34773 * 120.00078 * 62.63558 * 3 2 1 5 5 O 1.21665 * 119.99933 * 5.20223 * 4 3 2 6 6 C 1.46889 * 119.99796 * 185.19861 * 4 3 2 7 7 C 1.36125 * 125.43490 * 185.96400 * 6 4 3 8 8 C 1.41704 * 107.74865 * 180.25899 * 7 6 4 9 9 C 1.40022 * 133.35398 * 179.81068 * 8 7 6 10 10 C 1.36577 * 119.83256 * 179.97438 * 9 8 7 11 11 C 1.38858 * 120.59749 * 359.95003 * 10 9 8 12 12 C 1.37843 * 120.63566 * 0.02562 * 11 10 9 13 13 C 1.39089 * 119.81294 * 0.02562 * 12 11 10 14 14 N 1.37836 * 133.16398 * 180.02562 * 13 12 11 15 15 C 1.36897 * 125.61689 * 359.96745 * 14 13 12 16 16 H 1.07999 * 120.00043 * 224.59627 * 15 14 13 17 17 C 1.39016 * 119.99917 * 44.60116 * 15 14 13 18 18 N 1.31347 * 119.99693 * 198.60861 * 17 15 14 19 19 Si 1.86799 * 120.00018 * 18.60127 * 17 15 14 20 20 H 1.48501 * 109.47419 * 264.69891 * 19 17 15 21 21 H 1.48505 * 109.47081 * 24.69791 * 19 17 15 22 22 H 1.48495 * 109.46961 * 144.69522 * 19 17 15 23 23 C 1.54508 * 110.51010 * 237.39760 * 2 1 3 24 24 C 1.54477 * 104.05922 * 241.21453 * 23 2 1 25 25 O 1.44425 * 104.80510 * 23.98260 * 24 23 2 26 26 C 1.44428 * 105.26892 * 319.48397 * 25 24 23 27 27 H 1.09003 * 109.46938 * 60.69926 * 1 2 3 28 28 H 1.08993 * 109.46678 * 180.70186 * 1 2 3 29 29 H 1.08997 * 109.46571 * 300.70381 * 1 2 3 30 30 H 0.96999 * 119.99742 * 242.63450 * 3 2 1 31 31 H 1.07997 * 126.12864 * 0.02562 * 7 6 4 32 32 H 1.07995 * 120.08137 * 359.93556 * 9 8 7 33 33 H 1.07996 * 119.69903 * 179.97438 * 10 9 8 34 34 H 1.08004 * 119.67678 * 180.02562 * 11 10 9 35 35 H 1.08000 * 120.09168 * 180.02562 * 12 11 10 36 36 H 0.97000 * 119.99874 * 174.98483 * 18 17 15 37 37 H 1.08996 * 110.50995 * 359.85818 * 23 2 1 38 38 H 1.09004 * 110.51264 * 122.57113 * 23 2 1 39 39 H 1.09008 * 110.37310 * 142.80846 * 24 23 2 40 40 H 1.08998 * 110.37631 * 265.03144 * 24 23 2 41 41 H 1.08997 * 110.37173 * 281.67831 * 26 25 24 42 42 H 1.09004 * 110.36662 * 159.34873 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0421 1.3727 0.0000 4 6 1.7749 2.1915 1.0366 5 8 1.1903 1.7643 2.0143 6 6 2.1896 3.5998 0.9858 7 6 2.0811 4.4918 2.0083 8 6 2.5853 5.7351 1.5523 9 6 2.7231 6.9939 2.1497 10 6 3.2601 8.0286 1.4382 11 6 3.6730 7.8443 0.1252 12 6 3.5481 6.6143 -0.4843 13 6 3.0031 5.5458 0.2198 14 7 2.7547 4.2299 -0.1067 15 6 3.0203 3.6446 -1.3154 16 1 2.2857 3.0012 -1.7769 17 6 4.2354 3.8784 -1.9489 18 7 4.3630 3.6384 -3.2339 19 14 5.6868 4.5340 -0.9725 20 1 5.7450 6.0120 -1.1044 21 1 5.5254 4.1706 0.4583 22 1 6.9436 3.9404 -1.4952 23 6 2.0714 -0.7797 -1.2191 24 6 2.8787 -1.9393 -0.5946 25 8 2.3119 -2.1165 0.7219 26 6 2.0743 -0.7806 1.2167 27 1 -0.3633 0.5030 -0.8962 28 1 -0.3632 -1.0275 0.0126 29 1 -0.3632 0.5247 0.8836 30 1 2.5733 1.6921 -0.7460 31 1 1.6789 4.2893 2.9900 32 1 2.4048 7.1465 3.1704 33 1 3.3650 8.9987 1.9009 34 1 4.0961 8.6727 -0.4235 35 1 3.8724 6.4807 -1.5057 36 1 5.1868 3.8693 -3.6910 37 1 1.2491 -1.1673 -1.8204 38 1 2.7200 -0.1439 -1.8218 39 1 2.7575 -2.8474 -1.1853 40 1 3.9331 -1.6722 -0.5229 41 1 3.0049 -0.3351 1.5681 42 1 1.3351 -0.7986 2.0176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611124242.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:16 Heat of formation + Delta-G solvation = -28.590162 kcal Electronic energy + Delta-G solvation = -26915.973456 eV Core-core repulsion = 23247.011020 eV Total energy + Delta-G solvation = -3668.962436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -42.54759 -41.31608 -39.54550 -37.78658 -36.14267 -35.35214 -33.16212 -32.55535 -30.93620 -30.66700 -29.70244 -27.48293 -26.76046 -25.12688 -23.84630 -22.82296 -22.25078 -21.01379 -20.79119 -20.16958 -18.30596 -17.83944 -17.60028 -17.04601 -16.69882 -16.51746 -16.23820 -15.86970 -15.86178 -15.32571 -15.14146 -14.97061 -14.75420 -14.71661 -14.47189 -13.99158 -13.67992 -13.53367 -13.40868 -13.23857 -12.98226 -12.74307 -12.50420 -12.45254 -12.31086 -12.10384 -12.02385 -11.95966 -11.55122 -11.32483 -11.05038 -10.86185 -10.45581 -10.11681 -9.06819 -8.86927 -8.63381 -6.62493 -0.05237 0.87903 1.09016 1.17739 1.30771 1.33396 1.97823 2.10808 2.27628 2.41778 2.75449 3.03332 3.13140 3.32124 3.72704 3.76377 3.91178 4.03014 4.13320 4.16667 4.28473 4.36645 4.55905 4.57360 4.60352 4.65943 4.66519 4.72610 4.77791 4.79928 4.89673 4.96855 5.02457 5.11173 5.18962 5.25087 5.34267 5.42190 5.65682 5.69498 5.74219 5.80124 5.97910 6.02922 6.36756 6.51251 6.74772 7.18307 7.21403 8.17217 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016285 B = 0.005318 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.990538 B = 5264.256336 C = 6378.784273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.132 3.868 3 N -0.713 5.713 4 C 0.593 3.407 5 O -0.564 6.564 6 C -0.039 4.039 7 C -0.159 4.159 8 C -0.145 4.145 9 C -0.075 4.075 10 C -0.152 4.152 11 C -0.112 4.112 12 C -0.140 4.140 13 C 0.044 3.956 14 N -0.294 5.294 15 C -0.381 4.381 16 H 0.108 0.892 17 C 0.070 3.930 18 N -0.847 5.847 19 Si 0.909 3.091 20 H -0.230 1.230 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.153 4.153 24 C 0.044 3.956 25 O -0.384 6.384 26 C 0.056 3.944 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.416 0.584 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.106 0.894 36 H 0.295 0.705 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 -1.297 2.591 2.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.046 3.954 3 N -0.372 5.372 4 C 0.382 3.618 5 O -0.444 6.444 6 C -0.152 4.152 7 C -0.187 4.187 8 C -0.150 4.150 9 C -0.094 4.094 10 C -0.171 4.171 11 C -0.131 4.131 12 C -0.161 4.161 13 C -0.069 4.069 14 N 0.039 4.961 15 C -0.508 4.508 16 H 0.125 0.875 17 C -0.143 4.143 18 N -0.477 5.477 19 Si 0.733 3.267 20 H -0.154 1.154 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.191 4.191 24 C -0.033 4.033 25 O -0.302 6.302 26 C -0.022 4.022 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.262 0.738 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.173 0.827 34 H 0.164 0.836 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.142 0.858 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.945 -2.152 2.760 3.625 hybrid contribution 0.997 0.462 -0.494 1.205 sum 0.052 -1.690 2.266 2.827 Atomic orbital electron populations 1.22050 0.92394 1.03441 1.02384 1.21874 0.95758 0.81477 0.96292 1.46924 1.54498 1.12179 1.23591 1.17198 0.77942 0.83965 0.82710 1.90680 1.43919 1.76495 1.33330 1.20609 1.11492 0.93778 0.89367 1.20775 1.07608 0.91559 0.98725 1.18409 1.06897 0.95706 0.94012 1.20640 0.98399 0.90080 1.00265 1.20882 1.02002 0.99832 0.94358 1.21127 1.00476 0.95440 0.96107 1.20311 1.03595 0.92547 0.99599 1.18906 1.05833 0.85640 0.96516 1.40273 1.41919 1.05258 1.08635 1.19070 1.03106 1.33857 0.94756 0.87465 1.25761 0.99090 0.93927 0.95553 1.69645 1.29378 1.40329 1.08345 0.86352 0.79349 0.81781 0.79249 1.15395 1.20786 1.19977 1.23263 1.01836 0.97437 0.96577 1.23584 0.96729 0.99578 0.83392 1.89099 1.83307 1.25618 1.32177 1.23635 0.99792 0.82296 0.96506 0.92063 0.89251 0.92731 0.73829 0.82918 0.83808 0.82683 0.83584 0.87640 0.89365 0.87228 0.90041 0.85805 0.92231 0.93735 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 8.26 71.98 0.59 -3.70 16 2 C 0.13 4.23 1.02 4.62 0.00 4.24 16 3 N -0.71 -27.72 4.91 -422.05 -2.07 -29.79 16 4 C 0.59 25.83 7.23 86.51 0.63 26.45 16 5 O -0.56 -25.07 14.27 -4.24 -0.06 -25.13 16 6 C -0.04 -1.81 6.77 39.91 0.27 -1.54 16 7 C -0.16 -6.85 10.55 22.63 0.24 -6.61 16 8 C -0.15 -6.09 6.16 -21.33 -0.13 -6.22 16 9 C -0.08 -2.50 10.06 22.31 0.22 -2.28 16 10 C -0.15 -4.49 9.97 22.03 0.22 -4.27 16 11 C -0.11 -3.70 10.02 22.32 0.22 -3.47 16 12 C -0.14 -5.84 6.89 22.38 0.15 -5.68 16 13 C 0.04 2.02 5.16 39.06 0.20 2.22 16 14 N -0.29 -14.13 2.38 -331.33 -0.79 -14.91 16 15 C -0.38 -18.71 8.02 84.09 0.67 -18.03 16 16 H 0.11 5.43 6.74 -2.91 -0.02 5.41 16 17 C 0.07 3.38 4.93 84.95 0.42 3.80 16 18 N -0.85 -41.26 13.95 21.67 0.30 -40.95 16 19 Si 0.91 39.94 24.41 68.60 1.67 41.62 16 20 H -0.23 -9.46 5.74 99.48 0.57 -8.89 16 21 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 C -0.15 -4.00 6.52 31.61 0.21 -3.80 16 24 C 0.04 1.05 7.63 72.48 0.55 1.61 16 25 O -0.38 -11.45 11.65 -148.98 -1.74 -13.18 16 26 C 0.06 1.82 5.58 72.48 0.40 2.23 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.05 1.85 6.61 -2.39 -0.02 1.83 16 30 H 0.42 17.13 4.24 -92.71 -0.39 16.74 16 31 H 0.15 5.91 8.06 -2.91 -0.02 5.89 16 32 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 33 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 34 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 35 H 0.11 4.56 6.05 -2.91 -0.02 4.54 16 36 H 0.30 13.25 8.31 -92.71 -0.77 12.48 16 37 H 0.11 2.36 7.73 -2.39 -0.02 2.34 16 38 H 0.08 2.29 7.53 -2.39 -0.02 2.28 16 39 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.04 1.60 8.05 -2.39 -0.02 1.58 16 42 H 0.10 3.27 7.64 -2.39 -0.02 3.25 16 Total: -1.00 -58.20 334.00 2.73 -55.47 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: 0.52 Total: 41.95 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 4.88 Total: -15.07 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -2.56 Total: -85.66 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -1.80 Total: -38.32 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 1.67 Total: 41.62 kcal Total: -58.20 2.73 -55.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611124242.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.881 kcal (2) G-P(sol) polarization free energy of solvation -58.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds