Wall clock time and date at job start Tue Mar 31 2020 11:32:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.39868 * 125.89638 * 2 1
4 4 C 1.35321 * 107.91988 * 179.71650 * 3 2 1
5 5 C 1.50696 * 126.12700 * 180.26698 * 4 3 2
6 6 N 1.34946 * 107.74088 * 0.42840 * 4 3 2
7 7 C 1.46506 * 126.03545 * 179.83816 * 6 4 3
8 8 C 1.52999 * 109.46956 * 269.71481 * 7 6 4
9 9 O 1.45197 * 109.46991 * 179.97438 * 8 7 6
10 10 C 1.34812 * 117.00145 * 180.02562 * 9 8 7
11 11 O 1.21532 * 119.99760 * 359.97438 * 10 9 8
12 12 C 1.47289 * 120.00127 * 180.02562 * 10 9 8
13 13 C 1.39291 * 120.28395 * 354.06695 * 12 10 9
14 14 C 1.38201 * 120.07945 * 180.02562 * 13 12 10
15 15 C 1.38834 * 120.68740 * 359.97438 * 14 13 12
16 16 C 1.37599 * 120.58123 * 0.02562 * 15 14 13
17 17 C 1.40704 * 119.88649 * 359.97438 * 16 15 14
18 18 C 1.40869 * 120.33073 * 179.97438 * 17 16 15
19 19 H 1.07993 * 120.00281 * 142.87706 * 18 17 16
20 20 C 1.40295 * 119.99719 * 322.87029 * 18 17 16
21 21 N 1.30618 * 119.99887 * 169.29028 * 20 18 17
22 22 Si 1.86803 * 119.99968 * 349.28955 * 20 18 17
23 23 H 1.48498 * 109.47275 * 86.22259 * 22 20 18
24 24 H 1.48503 * 109.46777 * 206.22164 * 22 20 18
25 25 H 1.48498 * 109.47123 * 326.21882 * 22 20 18
26 26 N 1.30830 * 125.90005 * 179.97438 * 2 1 3
27 27 H 1.09003 * 109.46914 * 269.99571 * 1 2 3
28 28 H 1.09001 * 109.47286 * 29.99344 * 1 2 3
29 29 H 1.08999 * 109.46886 * 149.99414 * 1 2 3
30 30 H 1.08000 * 126.04190 * 359.97438 * 3 2 1
31 31 H 1.09004 * 109.47065 * 270.18496 * 5 4 3
32 32 H 1.08990 * 109.47471 * 30.19062 * 5 4 3
33 33 H 1.09002 * 109.47001 * 150.19603 * 5 4 3
34 34 H 1.08995 * 109.47373 * 149.71557 * 7 6 4
35 35 H 1.09004 * 109.46963 * 29.71038 * 7 6 4
36 36 H 1.09008 * 109.47241 * 59.99905 * 8 7 6
37 37 H 1.09001 * 109.47456 * 300.00103 * 8 7 6
38 38 H 1.07989 * 119.96193 * 0.27872 * 13 12 10
39 39 H 1.08009 * 119.65843 * 179.97438 * 14 13 12
40 40 H 1.08004 * 119.71423 * 179.97438 * 15 14 13
41 41 H 1.08001 * 120.05524 * 180.02562 * 16 15 14
42 42 H 0.96998 * 120.00008 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3271 1.1330 0.0000
4 6 3.6142 0.7154 0.0064
5 6 4.8350 1.5990 0.0144
6 7 3.6087 -0.6340 0.0007
7 6 4.7899 -1.5007 0.0011
8 6 5.2019 -1.8021 -1.4412
9 8 6.3729 -2.6606 -1.4408
10 6 6.8674 -3.0219 -2.6417
11 8 6.3340 -2.6305 -3.6612
12 6 8.0533 -3.8920 -2.7184
13 6 8.7419 -4.2445 -1.5600
14 6 9.8545 -5.0607 -1.6369
15 6 10.2992 -5.5388 -2.8621
16 6 9.6400 -5.2081 -4.0237
17 6 8.5045 -4.3787 -3.9736
18 6 7.8228 -4.0338 -5.1571
19 1 6.7458 -3.9537 -5.1562
20 6 8.5430 -3.7941 -6.3370
21 7 7.9127 -3.6813 -7.4754
22 14 10.4035 -3.6361 -6.2798
23 1 11.0180 -4.9844 -6.3780
24 1 10.8642 -2.7982 -7.4161
25 1 10.8072 -3.0000 -5.0002
26 7 2.2742 -1.0598 0.0005
27 1 -0.3633 -0.0001 1.0277
28 1 -0.3634 0.8900 -0.5137
29 1 -0.3633 -0.8899 -0.5139
30 1 1.9923 2.1598 -0.0004
31 1 5.1329 1.8163 -1.0114
32 1 4.6057 2.5307 0.5313
33 1 5.6494 1.0888 0.5288
34 1 4.5561 -2.4333 0.5146
35 1 5.6091 -0.9982 0.5155
36 1 5.4357 -0.8695 -1.9548
37 1 4.3827 -2.3046 -1.9557
38 1 8.4036 -3.8829 -0.6004
39 1 10.3836 -5.3294 -0.7344
40 1 11.1708 -6.1754 -2.9039
41 1 9.9931 -5.5852 -4.9721
42 1 8.4106 -3.5152 -8.2911
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000731701449.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:32:36
Heat of formation + Delta-G solvation = 4.723990 kcal
Electronic energy + Delta-G solvation = -25012.073262 eV
Core-core repulsion = 21344.555436 eV
Total energy + Delta-G solvation = -3667.517826 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 1.43 seconds
Orbital eigenvalues (eV)
-41.38791 -39.56588 -37.63323 -35.76939 -34.41464 -33.73884 -32.32588 -30.71673
-30.62303 -30.03010 -27.38875 -27.01382 -25.56433 -23.49472 -22.35318 -21.37398
-20.51583 -19.85594 -19.27664 -17.64957 -17.19163 -16.37399 -16.15014 -16.01425
-15.50973 -15.06617 -14.36534 -14.20115 -13.98969 -13.83876 -13.75715 -13.46979
-13.25448 -13.09104 -12.96171 -12.72419 -12.60113 -12.30304 -12.15874 -12.00348
-11.80841 -11.56118 -11.43055 -10.99961 -10.86634 -10.58405 -10.56222 -10.36450
-10.07054 -9.91478 -9.34830 -9.19040 -9.00319 -8.58795 -7.96566 -7.74498
-7.05682 -4.64326 1.72752 1.88856 2.22061 2.51662 2.68453 3.00734
3.08254 3.19737 3.50952 3.65610 3.85337 4.37735 4.43871 4.48049
4.80130 4.83414 4.89017 5.13068 5.20816 5.23291 5.32784 5.46230
5.49032 5.56013 5.59763 5.66992 5.74166 5.79045 5.84124 5.90238
6.01651 6.11477 6.28406 6.47211 6.60887 6.65578 6.92635 6.98175
7.02535 7.19974 7.30729 7.53663 7.64993 7.67887 7.90030 8.29535
8.45289 8.65317 8.89033 9.92442
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.018485 B = 0.003017 C = 0.002811
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1514.381301 B = 9278.591231 C = 9958.867346
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 C 0.071 3.929
3 C -0.275 4.275
4 C 0.089 3.911
5 C -0.096 4.096
6 N -0.365 5.365
7 C 0.136 3.864
8 C 0.057 3.943
9 O -0.368 6.368
10 C 0.503 3.497
11 O -0.499 6.499
12 C -0.238 4.238
13 C -0.020 4.020
14 C -0.256 4.256
15 C -0.058 4.058
16 C -0.229 4.229
17 C 0.118 3.882
18 C -0.397 4.397
19 H 0.115 0.885
20 C 0.079 3.921
21 N -0.786 5.786
22 Si 0.913 3.087
23 H -0.263 1.263
24 H -0.287 1.287
25 H -0.245 1.245
26 N -0.293 5.293
27 H 0.075 0.925
28 H 0.076 0.924
29 H 0.072 0.928
30 H 0.146 0.854
31 H 0.083 0.917
32 H 0.085 0.915
33 H 0.073 0.927
34 H 0.106 0.894
35 H 0.103 0.897
36 H 0.068 0.932
37 H 0.073 0.927
38 H 0.108 0.892
39 H 0.100 0.900
40 H 0.100 0.900
41 H 0.111 0.889
42 H 0.290 0.710
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.866 8.201 13.062 16.173
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.096 4.096
3 C -0.304 4.304
4 C -0.038 4.038
5 C -0.155 4.155
6 N -0.149 5.149
7 C 0.014 3.986
8 C -0.019 4.019
9 O -0.287 6.287
10 C 0.352 3.648
11 O -0.388 6.388
12 C -0.241 4.241
13 C -0.038 4.038
14 C -0.275 4.275
15 C -0.077 4.077
16 C -0.248 4.248
17 C 0.114 3.886
18 C -0.423 4.423
19 H 0.133 0.867
20 C -0.143 4.143
21 N -0.409 5.409
22 Si 0.738 3.262
23 H -0.189 1.189
24 H -0.214 1.214
25 H -0.169 1.169
26 N -0.115 5.115
27 H 0.093 0.907
28 H 0.095 0.905
29 H 0.091 0.909
30 H 0.164 0.836
31 H 0.102 0.898
32 H 0.104 0.896
33 H 0.091 0.909
34 H 0.124 0.876
35 H 0.121 0.879
36 H 0.086 0.914
37 H 0.091 0.909
38 H 0.126 0.874
39 H 0.119 0.881
40 H 0.118 0.882
41 H 0.129 0.871
42 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -4.947 7.019 12.447 15.122
hybrid contribution 0.693 0.976 -0.289 1.231
sum -4.254 7.995 12.157 15.160
Atomic orbital electron populations
1.20161 0.86721 1.03303 1.02769 1.22339 0.96948 0.90837 0.99435
1.21094 0.90899 0.99701 1.18736 1.21170 0.97484 0.84571 1.00580
1.20512 0.93025 0.98127 1.03787 1.48348 1.05137 1.03991 1.57422
1.21389 0.84142 0.95850 0.97196 1.22956 0.88090 0.94985 0.95888
1.86489 1.43101 1.63217 1.35863 1.21341 0.84106 0.79366 0.79958
1.90837 1.59360 1.53764 1.34849 1.18650 1.00276 1.10087 0.95088
1.20959 0.93195 0.93441 0.96254 1.20385 1.01924 1.08614 0.96606
1.20829 0.97048 0.96775 0.93039 1.21237 1.01147 1.04861 0.97516
1.17496 0.90235 0.89013 0.91890 1.20032 0.98185 1.33914 0.90202
0.86704 1.26373 1.01845 0.91819 0.94213 1.69553 1.39852 1.31914
0.99610 0.86336 0.81275 0.79217 0.79356 1.18900 1.21389 1.16854
1.77376 0.86110 1.22649 1.25345 0.90666 0.90501 0.90918 0.83638
0.89849 0.89577 0.90857 0.87576 0.87871 0.91408 0.90905 0.87380
0.88145 0.88235 0.87088 0.89954
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.63 10.45 36.01 0.38 -0.25 16
2 C 0.07 0.91 7.22 -82.41 -0.59 0.31 16
3 C -0.28 -3.21 10.65 -40.01 -0.43 -3.64 16
4 C 0.09 1.06 6.93 -82.27 -0.57 0.49 16
5 C -0.10 -0.82 10.12 36.00 0.36 -0.45 16
6 N -0.37 -5.05 3.61 -57.14 -0.21 -5.26 16
7 C 0.14 1.73 6.63 -4.04 -0.03 1.71 16
8 C 0.06 0.93 5.80 37.16 0.22 1.15 16
9 O -0.37 -7.00 9.49 -40.80 -0.39 -7.39 16
10 C 0.50 11.73 7.84 34.41 0.27 12.00 16
11 O -0.50 -13.18 13.45 -19.29 -0.26 -13.44 16
12 C -0.24 -5.64 5.92 -104.39 -0.62 -6.25 16
13 C -0.02 -0.41 9.60 -39.20 -0.38 -0.79 16
14 C -0.26 -4.96 10.03 -39.37 -0.39 -5.35 16
15 C -0.06 -1.18 10.01 -39.59 -0.40 -1.57 16
16 C -0.23 -5.26 7.20 -38.88 -0.28 -5.54 16
17 C 0.12 2.99 5.01 -106.53 -0.53 2.46 16
18 C -0.40 -10.93 8.11 -37.81 -0.31 -11.24 16
19 H 0.12 3.50 6.30 -52.49 -0.33 3.17 16
20 C 0.08 2.06 5.47 -17.29 -0.09 1.97 16
21 N -0.79 -20.89 13.92 55.57 0.77 -20.12 16
22 Si 0.91 20.24 24.61 -169.99 -4.18 16.05 16
23 H -0.26 -5.50 6.45 56.52 0.36 -5.13 16
24 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16
25 H -0.25 -5.58 7.05 56.52 0.40 -5.19 16
26 N -0.29 -4.45 12.57 33.67 0.42 -4.03 16
27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
30 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16
31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16
33 H 0.07 0.56 7.08 -51.93 -0.37 0.19 16
34 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16
35 H 0.10 1.05 7.04 -51.93 -0.37 0.68 16
36 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16
37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16
38 H 0.11 1.91 7.61 -52.49 -0.40 1.51 16
39 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16
40 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16
41 H 0.11 2.50 4.95 -52.49 -0.26 2.24 16
42 H 0.29 6.88 8.29 -40.82 -0.34 6.54 16
LS Contribution 355.82 15.07 5.36 5.36
Total: -1.00 -31.34 355.82 -7.42 -38.76
By element:
Atomic # 1 Polarization: 10.62 SS G_CDS: -5.55 Total: 5.07 kcal
Atomic # 6 Polarization: -11.62 SS G_CDS: -3.39 Total: -15.01 kcal
Atomic # 7 Polarization: -30.39 SS G_CDS: 0.99 Total: -29.40 kcal
Atomic # 8 Polarization: -20.18 SS G_CDS: -0.65 Total: -20.83 kcal
Atomic # 14 Polarization: 20.24 SS G_CDS: -4.18 Total: 16.05 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -31.34 -7.42 -38.76 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000731701449.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.484 kcal
(2) G-P(sol) polarization free energy of solvation -31.343 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.141 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.724 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.43 seconds