Wall clock time and date at job start Tue Mar 31 2020 11:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38153 * 126.31522 * 2 1 4 4 C 1.47269 * 126.41747 * 0.02562 * 3 2 1 5 5 O 1.21525 * 120.00314 * 359.71176 * 4 3 2 6 6 O 1.34755 * 119.99629 * 179.71143 * 4 3 2 7 7 C 1.45201 * 117.00005 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47092 * 330.00249 * 7 6 4 9 9 C 1.52997 * 109.47146 * 90.00219 * 7 6 4 10 10 C 1.50704 * 109.47218 * 209.99858 * 7 6 4 11 11 H 1.07997 * 119.99665 * 0.02562 * 10 7 6 12 12 C 1.37872 * 119.99696 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00468 * 0.02562 * 12 10 7 14 14 Si 1.86809 * 119.99729 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.46832 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.46798 * 300.00548 * 14 12 10 17 17 H 1.48495 * 109.46707 * 60.00521 * 14 12 10 18 18 C 1.41382 * 107.15651 * 179.73716 * 3 2 1 19 19 N 1.30462 * 108.05683 * 0.26203 * 18 3 2 20 20 N 1.34507 * 126.31672 * 180.19474 * 2 1 3 21 21 C 1.40149 * 125.76128 * 359.96067 * 20 2 1 22 22 C 1.38848 * 120.06842 * 222.01846 * 21 20 2 23 23 C 1.38118 * 119.93346 * 179.79105 * 22 21 20 24 24 C 1.38283 * 120.06394 * 0.48252 * 23 22 21 25 25 C 1.50697 * 119.92937 * 179.77166 * 24 23 22 26 26 C 1.38280 * 120.13712 * 359.74328 * 24 23 22 27 27 C 1.38111 * 120.06807 * 0.02826 * 26 24 23 28 28 H 1.09001 * 109.47160 * 84.73167 * 1 2 3 29 29 H 1.08998 * 109.47131 * 204.72551 * 1 2 3 30 30 H 1.08998 * 109.47240 * 324.72209 * 1 2 3 31 31 H 1.09006 * 109.47447 * 300.00023 * 9 7 6 32 32 H 1.09002 * 109.47434 * 59.99938 * 9 7 6 33 33 H 1.09002 * 109.47761 * 180.02562 * 9 7 6 34 34 H 0.97005 * 120.00454 * 179.97438 * 13 12 10 35 35 H 1.07997 * 125.96771 * 180.24337 * 18 3 2 36 36 H 1.07999 * 120.03251 * 359.97438 * 22 21 20 37 37 H 1.08002 * 119.96554 * 180.23215 * 23 22 21 38 38 H 1.09003 * 109.47033 * 269.97726 * 25 24 23 39 39 H 1.09002 * 109.47448 * 29.97463 * 25 24 23 40 40 H 1.09000 * 109.47192 * 149.97837 * 25 24 23 41 41 H 1.08002 * 119.96434 * 179.97438 * 26 24 23 42 42 H 1.08001 * 120.03396 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1132 0.0000 4 6 1.8880 2.5195 0.0005 5 8 0.7027 2.7874 -0.0043 6 8 2.8025 3.5093 0.0063 7 6 2.2996 4.8714 0.0059 8 1 1.3414 4.9048 -0.5124 9 6 2.1161 5.3478 1.4482 10 6 3.2833 5.7699 -0.6985 11 1 4.1950 5.3582 -1.1055 12 6 3.0188 7.1171 -0.8241 13 7 1.9084 7.6183 -0.3290 14 14 4.2379 8.2308 -1.6979 15 1 3.7236 9.6238 -1.6982 16 1 5.5436 8.1857 -0.9919 17 1 4.4157 7.7680 -3.0977 18 6 3.6607 0.6492 0.0062 19 7 3.6356 -0.6552 0.0040 20 7 2.3036 -1.0838 -0.0037 21 6 1.8723 -2.4173 -0.0074 22 6 2.5081 -3.3563 0.7937 23 6 2.0780 -4.6688 0.7911 24 6 1.0218 -5.0501 -0.0159 25 6 0.5583 -6.4840 -0.0202 26 6 0.3896 -4.1182 -0.8184 27 6 0.8120 -2.8033 -0.8166 28 1 -0.3633 0.0944 -1.0233 29 1 -0.3633 -0.9334 0.4298 30 1 -0.3633 0.8389 0.5935 31 1 1.4046 4.6979 1.9578 32 1 3.0744 5.3144 1.9666 33 1 1.7382 6.3702 1.4480 34 1 1.7225 8.5663 -0.4171 35 1 4.5467 1.2667 0.0115 36 1 3.3362 -3.0601 1.4206 37 1 2.5698 -5.3989 1.4169 38 1 1.1038 -7.0398 -0.7828 39 1 0.7450 -6.9292 0.9571 40 1 -0.5091 -6.5202 -0.2380 41 1 -0.4348 -4.4191 -1.4479 42 1 0.3181 -2.0760 -1.4439 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733707903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:54 Heat of formation + Delta-G solvation = 7.819893 kcal Electronic energy + Delta-G solvation = -24987.981554 eV Core-core repulsion = 21320.597976 eV Total energy + Delta-G solvation = -3667.383578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.76870 -39.60268 -38.90362 -35.57142 -34.53111 -33.18269 -32.46757 -31.28664 -31.01079 -29.53429 -27.51889 -26.72373 -25.26718 -23.57799 -23.08957 -22.29615 -21.07120 -20.22316 -19.19577 -17.85285 -16.70678 -16.21596 -16.15325 -15.83390 -15.36679 -15.24689 -14.73831 -14.50371 -14.24938 -14.11211 -14.02550 -13.91507 -13.20340 -12.96200 -12.91895 -12.63012 -12.45286 -12.29366 -12.08876 -11.89680 -11.82923 -11.49816 -11.19060 -11.02306 -10.83206 -10.79220 -10.33932 -10.23561 -10.03564 -9.58422 -9.45987 -9.40616 -8.94347 -8.85208 -8.45297 -8.34453 -6.14099 -4.20532 0.55228 0.93286 1.64478 2.15994 2.27942 3.24910 3.29629 3.32821 3.35554 3.76934 3.81348 4.33775 4.39432 4.42740 4.44047 4.57076 4.71475 4.85953 4.92269 5.02262 5.17153 5.18936 5.24788 5.27830 5.40731 5.48073 5.53685 5.59417 5.68181 5.84302 5.96524 5.97939 6.13416 6.14307 6.37697 6.50036 6.71781 6.95633 6.96907 6.98190 7.24156 7.51710 7.64855 7.78754 7.99684 8.19734 8.72020 8.96314 9.44669 10.93323 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.035711 B = 0.002486 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.894616 B =11262.200618 C =11552.368708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.157 3.843 3 C -0.262 4.262 4 C 0.533 3.467 5 O -0.528 6.528 6 O -0.351 6.351 7 C 0.218 3.782 8 H 0.047 0.953 9 C -0.154 4.154 10 C -0.519 4.519 11 H 0.068 0.932 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.912 3.088 15 H -0.285 1.285 16 H -0.274 1.274 17 H -0.275 1.275 18 C 0.113 3.887 19 N -0.300 5.300 20 N -0.321 5.321 21 C 0.145 3.855 22 C -0.100 4.100 23 C -0.105 4.105 24 C -0.086 4.086 25 C -0.115 4.115 26 C -0.102 4.102 27 C -0.119 4.119 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.016 0.984 32 H 0.036 0.964 33 H 0.099 0.901 34 H 0.266 0.734 35 H 0.204 0.796 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.133 0.867 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 -25.732 1.472 25.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.029 3.971 3 C -0.274 4.274 4 C 0.377 3.623 5 O -0.420 6.420 6 O -0.267 6.267 7 C 0.165 3.835 8 H 0.065 0.935 9 C -0.212 4.212 10 C -0.557 4.557 11 H 0.087 0.913 12 C -0.140 4.140 13 N -0.528 5.528 14 Si 0.739 3.261 15 H -0.211 1.211 16 H -0.200 1.200 17 H -0.200 1.200 18 C -0.075 4.075 19 N -0.117 5.117 20 N -0.096 5.096 21 C 0.054 3.946 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.087 4.087 25 C -0.172 4.172 26 C -0.121 4.121 27 C -0.139 4.139 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.126 0.874 31 H 0.035 0.965 32 H 0.055 0.945 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.221 0.779 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.151 0.849 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.805 -26.544 1.494 26.734 hybrid contribution 0.202 1.605 -0.424 1.672 sum -2.603 -24.939 1.070 25.098 Atomic orbital electron populations 1.20785 0.85820 1.04498 1.04715 1.21568 0.94950 0.85610 0.94934 1.19422 0.93115 0.91662 1.23205 1.19755 0.84389 0.85284 0.72823 1.90733 1.18295 1.84899 1.48036 1.86528 1.39387 1.18731 1.82028 1.20615 0.96585 0.71618 0.94664 0.93515 1.22160 0.98837 1.03565 0.96654 1.20994 1.06024 0.92057 1.36655 0.91337 1.24879 0.95871 0.97643 0.95619 1.69890 1.24099 1.13840 1.44940 0.86337 0.80818 0.78981 0.80007 1.21098 1.19952 1.20014 1.24383 0.98041 0.91115 0.93988 1.77331 0.94555 1.13454 1.26361 1.45540 1.04757 1.03384 1.55877 1.17423 0.97366 0.80835 0.98989 1.21056 1.00243 0.92663 0.97980 1.20957 0.96732 0.95253 0.99386 1.20053 0.95809 0.96435 0.96383 1.20813 1.01656 0.91883 1.02821 1.20895 1.00274 0.91681 0.99227 1.21148 0.97257 0.97231 0.98241 0.89121 0.90946 0.87426 0.96505 0.94463 0.88308 0.92403 0.77924 0.84780 0.85032 0.90877 0.91292 0.91262 0.84900 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 8.15 36.00 0.29 -0.97 16 2 C 0.16 2.44 6.82 -81.45 -0.56 1.88 16 3 C -0.26 -4.75 6.13 -105.06 -0.64 -5.39 16 4 C 0.53 11.74 7.93 34.40 0.27 12.01 16 5 O -0.53 -12.46 14.23 -19.29 -0.27 -12.73 16 6 O -0.35 -8.54 9.71 -40.64 -0.39 -8.94 16 7 C 0.22 5.91 2.56 -27.88 -0.07 5.84 16 8 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 9 C -0.15 -3.97 9.33 37.16 0.35 -3.62 16 10 C -0.52 -14.68 8.90 -34.44 -0.31 -14.99 16 11 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 12 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 13 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 14 Si 0.91 21.25 29.54 -169.99 -5.02 16.22 16 15 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.11 1.83 11.87 -16.94 -0.20 1.63 16 19 N -0.30 -4.76 12.32 30.88 0.38 -4.38 16 20 N -0.32 -4.70 3.67 -6.50 -0.02 -4.72 16 21 C 0.14 1.73 6.06 -83.60 -0.51 1.22 16 22 C -0.10 -1.04 9.83 -39.40 -0.39 -1.43 16 23 C -0.10 -0.83 9.69 -39.61 -0.38 -1.22 16 24 C -0.09 -0.62 5.88 -104.59 -0.62 -1.24 16 25 C -0.12 -0.52 10.01 36.00 0.36 -0.16 16 26 C -0.10 -0.78 9.69 -39.61 -0.38 -1.16 16 27 C -0.12 -1.15 8.27 -39.40 -0.33 -1.48 16 28 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 29 H 0.07 0.73 6.87 -51.93 -0.36 0.37 16 30 H 0.11 1.54 6.81 -51.93 -0.35 1.19 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.10 2.69 6.07 -51.93 -0.32 2.38 16 34 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.20 2.87 8.06 -52.49 -0.42 2.45 16 36 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 40 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.13 1.20 6.91 -52.49 -0.36 0.84 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -32.53 359.36 -8.02 -40.54 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.52 Total: 0.82 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -3.20 Total: -7.44 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.98 Total: -33.89 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.67 Total: -21.67 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.53 -8.02 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733707903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.362 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds