Wall clock time and date at job start Tue Mar 31 2020 11:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38153 * 126.31522 * 2 1 4 4 C 1.47269 * 126.41747 * 0.02562 * 3 2 1 5 5 O 1.21525 * 120.00314 * 359.71176 * 4 3 2 6 6 O 1.34755 * 119.99629 * 179.71143 * 4 3 2 7 7 C 1.45201 * 117.00005 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47092 * 330.00249 * 7 6 4 9 9 C 1.52997 * 109.47146 * 90.00219 * 7 6 4 10 10 C 1.50704 * 109.47218 * 209.99858 * 7 6 4 11 11 H 1.07997 * 119.99665 * 0.02562 * 10 7 6 12 12 C 1.37872 * 119.99696 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00468 * 0.02562 * 12 10 7 14 14 Si 1.86809 * 119.99729 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.46832 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.46798 * 300.00548 * 14 12 10 17 17 H 1.48495 * 109.46707 * 60.00521 * 14 12 10 18 18 C 1.41382 * 107.15651 * 179.73716 * 3 2 1 19 19 N 1.30462 * 108.05683 * 0.26203 * 18 3 2 20 20 N 1.34507 * 126.31672 * 180.19474 * 2 1 3 21 21 C 1.40149 * 125.76128 * 359.96067 * 20 2 1 22 22 C 1.38848 * 120.06842 * 222.01846 * 21 20 2 23 23 C 1.38118 * 119.93346 * 179.79105 * 22 21 20 24 24 C 1.38283 * 120.06394 * 0.48252 * 23 22 21 25 25 C 1.50697 * 119.92937 * 179.77166 * 24 23 22 26 26 C 1.38280 * 120.13712 * 359.74328 * 24 23 22 27 27 C 1.38111 * 120.06807 * 0.02826 * 26 24 23 28 28 H 1.09001 * 109.47160 * 84.73167 * 1 2 3 29 29 H 1.08998 * 109.47131 * 204.72551 * 1 2 3 30 30 H 1.08998 * 109.47240 * 324.72209 * 1 2 3 31 31 H 1.09006 * 109.47447 * 300.00023 * 9 7 6 32 32 H 1.09002 * 109.47434 * 59.99938 * 9 7 6 33 33 H 1.09002 * 109.47761 * 180.02562 * 9 7 6 34 34 H 0.97005 * 120.00454 * 179.97438 * 13 12 10 35 35 H 1.07997 * 125.96771 * 180.24337 * 18 3 2 36 36 H 1.07999 * 120.03251 * 359.97438 * 22 21 20 37 37 H 1.08002 * 119.96554 * 180.23215 * 23 22 21 38 38 H 1.09003 * 109.47033 * 269.97726 * 25 24 23 39 39 H 1.09002 * 109.47448 * 29.97463 * 25 24 23 40 40 H 1.09000 * 109.47192 * 149.97837 * 25 24 23 41 41 H 1.08002 * 119.96434 * 179.97438 * 26 24 23 42 42 H 1.08001 * 120.03396 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1132 0.0000 4 6 1.8880 2.5195 0.0005 5 8 0.7027 2.7874 -0.0043 6 8 2.8025 3.5093 0.0063 7 6 2.2996 4.8714 0.0059 8 1 1.3414 4.9048 -0.5124 9 6 2.1161 5.3478 1.4482 10 6 3.2833 5.7699 -0.6985 11 1 4.1950 5.3582 -1.1055 12 6 3.0188 7.1171 -0.8241 13 7 1.9084 7.6183 -0.3290 14 14 4.2379 8.2308 -1.6979 15 1 3.7236 9.6238 -1.6982 16 1 5.5436 8.1857 -0.9919 17 1 4.4157 7.7680 -3.0977 18 6 3.6607 0.6492 0.0062 19 7 3.6356 -0.6552 0.0040 20 7 2.3036 -1.0838 -0.0037 21 6 1.8723 -2.4173 -0.0074 22 6 2.5081 -3.3563 0.7937 23 6 2.0780 -4.6688 0.7911 24 6 1.0218 -5.0501 -0.0159 25 6 0.5583 -6.4840 -0.0202 26 6 0.3896 -4.1182 -0.8184 27 6 0.8120 -2.8033 -0.8166 28 1 -0.3633 0.0944 -1.0233 29 1 -0.3633 -0.9334 0.4298 30 1 -0.3633 0.8389 0.5935 31 1 1.4046 4.6979 1.9578 32 1 3.0744 5.3144 1.9666 33 1 1.7382 6.3702 1.4480 34 1 1.7225 8.5663 -0.4171 35 1 4.5467 1.2667 0.0115 36 1 3.3362 -3.0601 1.4206 37 1 2.5698 -5.3989 1.4169 38 1 1.1038 -7.0398 -0.7828 39 1 0.7450 -6.9292 0.9571 40 1 -0.5091 -6.5202 -0.2380 41 1 -0.4348 -4.4191 -1.4479 42 1 0.3181 -2.0760 -1.4439 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733707903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:49 Heat of formation + Delta-G solvation = -9.057098 kcal Electronic energy + Delta-G solvation = -24988.713395 eV Core-core repulsion = 21320.597976 eV Total energy + Delta-G solvation = -3668.115419 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -42.95712 -40.91647 -40.14258 -37.46371 -35.49035 -35.20405 -33.55009 -32.10329 -31.99905 -31.42581 -28.76186 -27.46717 -27.40261 -24.87298 -24.04065 -23.26338 -22.69238 -21.40747 -20.70496 -19.18278 -18.64688 -17.76470 -17.21174 -17.18716 -16.59848 -16.48833 -16.30648 -16.01396 -15.41464 -14.94716 -14.78992 -14.66742 -14.57378 -14.40409 -14.02679 -13.90814 -13.81518 -13.42607 -13.19064 -13.06466 -13.01832 -12.95811 -12.78912 -12.54005 -12.36656 -12.26402 -12.14995 -11.97415 -11.53929 -11.30523 -11.04784 -10.96168 -10.56956 -10.12073 -10.07470 -9.31683 -8.25968 -6.42286 -0.33303 0.26573 0.47002 0.95333 1.06257 1.43407 1.47389 1.55275 2.08641 2.15615 2.44393 2.58766 3.04533 3.36499 3.49240 3.71639 3.83292 3.84029 3.94561 4.01780 4.30435 4.33531 4.38838 4.47374 4.52914 4.57132 4.71024 4.75657 4.83015 4.87766 4.89558 4.94444 4.99684 5.10324 5.13067 5.22774 5.28287 5.33238 5.51410 5.55098 5.66170 5.68803 5.94116 6.00113 6.11299 6.29765 6.62844 7.03065 7.29485 8.81650 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.035711 B = 0.002486 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.894616 B =11262.200618 C =11552.368708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.171 3.829 3 C -0.299 4.299 4 C 0.531 3.469 5 O -0.552 6.552 6 O -0.357 6.357 7 C 0.220 3.780 8 H 0.010 0.990 9 C -0.141 4.141 10 C -0.547 4.547 11 H 0.068 0.932 12 C 0.016 3.984 13 N -0.916 5.916 14 Si 0.983 3.017 15 H -0.277 1.277 16 H -0.264 1.264 17 H -0.269 1.269 18 C 0.112 3.888 19 N -0.310 5.310 20 N -0.310 5.310 21 C 0.102 3.898 22 C -0.110 4.110 23 C -0.105 4.105 24 C -0.077 4.077 25 C -0.115 4.115 26 C -0.100 4.100 27 C -0.121 4.121 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.023 0.977 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.271 0.729 35 H 0.216 0.784 36 H 0.125 0.875 37 H 0.156 0.844 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.162 0.838 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 -28.361 0.974 28.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.040 3.960 3 C -0.311 4.311 4 C 0.377 3.623 5 O -0.445 6.445 6 O -0.273 6.273 7 C 0.167 3.833 8 H 0.028 0.972 9 C -0.199 4.199 10 C -0.585 4.585 11 H 0.086 0.914 12 C -0.184 4.184 13 N -0.554 5.554 14 Si 0.806 3.194 15 H -0.202 1.202 16 H -0.189 1.189 17 H -0.194 1.194 18 C -0.076 4.076 19 N -0.127 5.127 20 N -0.083 5.083 21 C 0.012 3.988 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.077 4.077 25 C -0.172 4.172 26 C -0.118 4.118 27 C -0.141 4.141 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.233 0.767 36 H 0.143 0.857 37 H 0.173 0.827 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.179 0.821 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.839 -29.228 1.005 29.383 hybrid contribution 0.109 2.138 -0.263 2.157 sum -2.730 -27.090 0.743 27.237 Atomic orbital electron populations 1.20857 0.83883 1.05205 1.05486 1.21898 0.96073 0.85179 0.92873 1.19240 0.94685 0.89989 1.27195 1.20317 0.83890 0.86167 0.71890 1.90704 1.19046 1.85366 1.49391 1.86509 1.39943 1.18136 1.82730 1.20346 0.94873 0.73219 0.94859 0.97234 1.21983 0.99255 1.02558 0.96122 1.21263 1.06351 0.93001 1.37837 0.91425 1.25823 0.97728 0.98874 0.95969 1.70010 1.25613 1.14413 1.45395 0.85237 0.78496 0.76865 0.78819 1.20201 1.18867 1.19411 1.24557 0.97855 0.91388 0.93755 1.77287 0.95768 1.13012 1.26591 1.45735 1.04058 1.04363 1.54138 1.17835 0.99491 0.79740 1.01696 1.21131 1.00190 0.93601 0.98021 1.21259 0.96911 0.94514 0.99625 1.20475 0.94605 0.97873 0.94760 1.20902 1.02553 0.89836 1.03871 1.21264 1.00706 0.90664 0.99202 1.21309 0.96485 0.98443 0.97849 0.87658 0.88015 0.89289 0.95813 0.93675 0.89959 0.92000 0.76744 0.85701 0.82653 0.89855 0.90214 0.89944 0.82057 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.39 8.15 71.23 0.58 -1.81 16 2 C 0.17 5.32 6.82 42.13 0.29 5.61 16 3 C -0.30 -11.19 6.13 -20.15 -0.12 -11.31 16 4 C 0.53 24.44 7.93 70.20 0.56 25.00 16 5 O -0.55 -27.32 14.23 19.75 0.28 -27.04 16 6 O -0.36 -18.14 9.71 -56.66 -0.55 -18.69 16 7 C 0.22 12.47 2.56 29.85 0.08 12.55 16 8 H 0.01 0.62 7.16 -2.39 -0.02 0.60 16 9 C -0.14 -7.50 9.33 71.98 0.67 -6.83 16 10 C -0.55 -31.68 8.90 25.60 0.23 -31.45 16 11 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 12 C 0.02 0.88 5.30 84.65 0.45 1.33 16 13 N -0.92 -53.25 11.32 21.44 0.24 -53.01 16 14 Si 0.98 43.52 29.54 68.60 2.03 45.54 16 15 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 C 0.11 3.75 11.87 85.67 1.02 4.76 16 19 N -0.31 -9.92 12.32 -56.21 -0.69 -10.61 16 20 N -0.31 -9.00 3.67 -174.46 -0.64 -9.64 16 21 C 0.10 2.33 6.06 38.10 0.23 2.56 16 22 C -0.11 -2.16 9.83 22.39 0.22 -1.94 16 23 C -0.10 -1.39 9.69 22.25 0.22 -1.18 16 24 C -0.08 -0.84 5.88 -19.84 -0.12 -0.95 16 25 C -0.12 -0.56 10.01 71.23 0.71 0.16 16 26 C -0.10 -1.19 9.69 22.25 0.22 -0.97 16 27 C -0.12 -2.10 8.27 22.39 0.19 -1.92 16 28 H 0.11 2.31 8.06 -2.39 -0.02 2.29 16 29 H 0.10 1.88 6.87 -2.39 -0.02 1.86 16 30 H 0.09 2.60 6.81 -2.39 -0.02 2.59 16 31 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 4.63 6.07 -2.39 -0.01 4.62 16 34 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 35 H 0.22 6.29 8.06 -2.91 -0.02 6.27 16 36 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.08 0.26 8.08 -2.39 -0.02 0.24 16 40 H 0.08 0.24 8.08 -2.39 -0.02 0.22 16 41 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 42 H 0.14 2.21 6.91 -2.91 -0.02 2.19 16 Total: -1.00 -72.41 359.36 7.11 -65.30 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.03 Total: 14.56 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 5.41 Total: -6.41 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -1.09 Total: -73.26 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -0.27 Total: -45.73 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.41 7.11 -65.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733707903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.244 kcal (2) G-P(sol) polarization free energy of solvation -72.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds