Wall clock time and date at job start Tue Mar 31 2020 11:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34392 * 125.55753 * 2 1 4 4 C 1.46766 * 106.51234 * 180.24309 * 3 2 1 5 5 C 1.47103 * 126.90149 * 179.75165 * 4 3 2 6 6 O 1.21552 * 120.00067 * 179.97438 * 5 4 3 7 7 O 1.34787 * 119.99805 * 0.02562 * 5 4 3 8 8 C 1.45204 * 117.00170 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.46779 * 30.00287 * 8 7 5 10 10 C 1.52994 * 109.47357 * 270.00449 * 8 7 5 11 11 C 1.50695 * 109.46952 * 149.99693 * 8 7 5 12 12 H 1.08003 * 120.00080 * 35.26828 * 11 8 7 13 13 C 1.37882 * 119.99905 * 215.26176 * 11 8 7 14 14 N 1.31517 * 119.99925 * 185.79309 * 13 11 8 15 15 Si 1.86795 * 119.99892 * 5.78966 * 13 11 8 16 16 H 1.48499 * 109.46989 * 84.85065 * 15 13 11 17 17 H 1.48509 * 109.47153 * 204.84697 * 15 13 11 18 18 H 1.48493 * 109.47528 * 324.84697 * 15 13 11 19 19 C 1.36828 * 106.20233 * 359.75502 * 4 3 2 20 20 C 1.50699 * 125.85983 * 179.97438 * 19 4 3 21 21 N 1.35464 * 108.27656 * 0.02562 * 19 4 3 22 22 C 1.39780 * 124.94030 * 179.97438 * 21 19 4 23 23 C 1.38958 * 119.68768 * 131.78499 * 22 21 19 24 24 C 1.38405 * 119.10432 * 179.72336 * 23 22 21 25 25 C 1.38802 * 118.48466 * 0.53662 * 24 23 22 26 26 C 1.38119 * 119.29563 * 359.48536 * 25 24 23 27 27 N 1.31906 * 120.83630 * 0.24923 * 26 25 24 28 28 H 1.09002 * 109.46985 * 266.38931 * 1 2 3 29 29 H 1.08995 * 109.46724 * 26.38299 * 1 2 3 30 30 H 1.08997 * 109.47102 * 146.38593 * 1 2 3 31 31 H 1.08007 * 126.74346 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47165 * 185.17187 * 10 8 7 33 33 H 1.09000 * 109.46837 * 305.16964 * 10 8 7 34 34 H 1.08999 * 109.47458 * 65.17354 * 10 8 7 35 35 H 0.96996 * 119.99723 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.47272 * 270.04455 * 20 19 4 37 37 H 1.09004 * 109.47038 * 30.04064 * 20 19 4 38 38 H 1.08997 * 109.46961 * 150.04030 * 20 19 4 39 39 H 1.07995 * 120.44796 * 0.02562 * 23 22 21 40 40 H 1.08001 * 120.76165 * 180.26955 * 24 23 22 41 41 H 1.08005 * 120.35102 * 179.75483 * 25 24 23 42 42 H 1.07995 * 119.57664 * 180.23261 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2885 1.0933 0.0000 4 6 3.6758 0.6144 -0.0060 5 6 4.8946 1.4381 -0.0132 6 8 5.9876 0.9063 -0.0172 7 8 4.7993 2.7826 -0.0144 8 6 6.0431 3.5317 -0.0212 9 1 6.8111 2.9561 -0.5380 10 6 6.4868 3.7965 1.4189 11 6 5.8353 4.8440 -0.7323 12 1 4.8926 5.3634 -0.6427 13 6 6.8487 5.3816 -1.4972 14 7 6.7105 6.5786 -2.0244 15 14 8.4180 4.4100 -1.7845 16 1 8.2269 3.4899 -2.9344 17 1 9.5327 5.3459 -2.0795 18 1 8.7421 3.6220 -0.5684 19 6 3.6080 -0.7522 -0.0035 20 6 4.7840 -1.6945 -0.0083 21 7 2.3022 -1.1127 0.0028 22 6 1.8355 -2.4303 0.0065 23 6 0.8516 -2.8093 0.9115 24 6 0.3941 -4.1156 0.9007 25 6 0.9476 -5.0033 -0.0116 26 6 1.9231 -4.5574 -0.8819 27 7 2.3350 -3.3047 -0.8515 28 1 -0.3633 -0.0647 1.0256 29 1 -0.3632 0.9206 -0.4567 30 1 -0.3633 -0.8558 -0.5689 31 1 1.9602 2.1223 -0.0004 32 1 7.3694 4.4362 1.4153 33 1 5.6817 4.2914 1.9619 34 1 6.7256 2.8508 1.9053 35 1 7.4235 6.9569 -2.5622 36 1 5.0627 -1.9226 -1.0370 37 1 5.6266 -1.2266 0.5011 38 1 4.5136 -2.6156 0.5078 39 1 0.4457 -2.0931 1.6106 40 1 -0.3729 -4.4380 1.5893 41 1 0.6159 -6.0306 -0.0435 42 1 2.3541 -5.2433 -1.5960 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733710951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:01 Heat of formation + Delta-G solvation = 0.220488 kcal Electronic energy + Delta-G solvation = -25536.987298 eV Core-core repulsion = 21869.274185 eV Total energy + Delta-G solvation = -3667.713113 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.00172 -40.08055 -38.96823 -35.60070 -33.60027 -33.18714 -32.91475 -32.39702 -30.54594 -29.60902 -29.11773 -25.41386 -25.15130 -24.14604 -24.06177 -22.36389 -20.68885 -20.01868 -19.01052 -17.30162 -17.16044 -16.97422 -16.61648 -16.02114 -15.55201 -15.37475 -14.90984 -14.57860 -14.22953 -13.94934 -13.65697 -13.61029 -13.29725 -13.23609 -12.85951 -12.61886 -12.53404 -12.39859 -12.25650 -12.16486 -12.07836 -11.60971 -11.35298 -10.98264 -10.88665 -10.62155 -10.47333 -10.10196 -9.89671 -9.84116 -9.55726 -9.32156 -8.99775 -8.62254 -8.50166 -8.00057 -6.18983 -4.21691 0.37410 0.70130 1.83981 2.31355 2.41385 3.21906 3.29247 3.36308 3.43381 3.86358 3.87384 4.04697 4.25933 4.35244 4.39053 4.52329 4.53401 4.77909 4.95697 5.08164 5.14839 5.16442 5.29638 5.36475 5.41057 5.58516 5.63388 5.69991 5.75702 5.81419 5.98676 6.05093 6.14811 6.27284 6.34246 6.57400 6.64459 6.80309 6.82641 6.97292 7.20171 7.25943 7.48497 7.52246 7.67591 8.37306 8.84417 8.95832 9.41425 10.92555 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.025316 B = 0.003107 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.753138 B = 9009.469164 C = 9516.591993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.002 3.998 3 C -0.122 4.122 4 C -0.201 4.201 5 C 0.529 3.471 6 O -0.535 6.535 7 O -0.341 6.341 8 C 0.182 3.818 9 H 0.047 0.953 10 C -0.153 4.153 11 C -0.515 4.515 12 H 0.085 0.915 13 C 0.081 3.919 14 N -0.885 5.885 15 Si 0.869 3.131 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.260 1.260 19 C 0.127 3.873 20 C -0.085 4.085 21 N -0.398 5.398 22 C 0.341 3.659 23 C -0.164 4.164 24 C -0.058 4.058 25 C -0.178 4.178 26 C 0.124 3.876 27 N -0.485 5.485 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.160 0.840 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.030 0.970 35 H 0.269 0.731 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.203 -23.896 6.190 28.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 C -0.146 4.146 4 C -0.209 4.209 5 C 0.375 3.625 6 O -0.428 6.428 7 O -0.256 6.256 8 C 0.129 3.871 9 H 0.065 0.935 10 C -0.210 4.210 11 C -0.552 4.552 12 H 0.103 0.897 13 C -0.123 4.123 14 N -0.521 5.521 15 Si 0.695 3.305 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.184 1.184 19 C 0.015 3.985 20 C -0.142 4.142 21 N -0.077 5.077 22 C 0.115 3.885 23 C -0.186 4.186 24 C -0.084 4.084 25 C -0.198 4.198 26 C -0.034 4.034 27 N -0.196 5.196 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.178 0.822 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.256 -23.799 5.490 28.280 hybrid contribution 0.306 -0.672 0.219 0.770 sum -13.950 -24.470 5.709 28.740 Atomic orbital electron populations 1.20366 0.87549 1.03544 1.02381 1.20240 0.93528 0.84178 1.12221 1.22017 0.90330 0.98054 1.04165 1.19502 0.92661 0.90872 1.17844 1.20043 0.87193 0.82848 0.72402 1.90714 1.29228 1.74267 1.48604 1.86737 1.40624 1.16378 1.81901 1.20975 0.80988 0.90620 0.94522 0.93536 1.22234 1.01330 0.99512 0.97970 1.20810 1.03042 1.01451 1.29931 0.89686 1.24908 0.98356 0.94914 0.94102 1.69862 1.33878 1.15270 1.33137 0.86957 0.83127 0.80317 0.80078 1.19574 1.20866 1.18421 1.20496 0.83953 0.93667 1.00392 1.20521 0.93914 0.96015 1.03789 1.40973 1.05699 1.02479 1.58502 1.18208 0.93364 0.84714 0.92229 1.21897 0.99254 0.97962 0.99505 1.21541 0.97787 0.92039 0.97081 1.22244 0.98544 1.01536 0.97445 1.22682 0.93266 0.90622 0.96875 1.67215 1.28242 1.03584 1.20554 0.91044 0.89474 0.92118 0.82195 0.91825 0.92664 0.95117 0.92098 0.89895 0.88183 0.92437 0.83865 0.83812 0.83985 0.81735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 8.89 36.01 0.32 -0.42 16 2 C 0.00 0.02 6.67 -81.75 -0.55 -0.52 16 3 C -0.12 -1.99 10.88 -37.50 -0.41 -2.40 16 4 C -0.20 -3.86 6.29 -103.37 -0.65 -4.51 16 5 C 0.53 12.15 7.92 34.33 0.27 12.42 16 6 O -0.53 -12.97 14.07 -19.31 -0.27 -13.24 16 7 O -0.34 -8.54 9.76 -40.73 -0.40 -8.94 16 8 C 0.18 4.83 2.25 -27.89 -0.06 4.76 16 9 H 0.05 1.29 4.26 -51.93 -0.22 1.07 16 10 C -0.15 -3.57 9.53 37.15 0.35 -3.22 16 11 C -0.52 -15.18 9.24 -34.44 -0.32 -15.50 16 12 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 13 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 14 N -0.88 -27.01 13.96 55.43 0.77 -26.23 16 15 Si 0.87 22.25 27.02 -169.99 -4.59 17.66 16 16 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.26 -6.50 6.78 56.52 0.38 -6.12 16 19 C 0.13 2.13 6.84 -81.50 -0.56 1.58 16 20 C -0.09 -1.30 9.05 36.00 0.33 -0.97 16 21 N -0.40 -5.71 2.87 -54.13 -0.16 -5.86 16 22 C 0.34 4.03 6.05 -154.41 -0.93 3.09 16 23 C -0.16 -1.38 8.64 -39.25 -0.34 -1.72 16 24 C -0.06 -0.33 10.17 -39.31 -0.40 -0.73 16 25 C -0.18 -0.97 10.11 -39.42 -0.40 -1.36 16 26 C 0.12 0.95 11.18 -17.56 -0.20 0.75 16 27 N -0.49 -5.65 9.50 -12.30 -0.12 -5.76 16 28 H 0.07 0.51 7.81 -51.93 -0.41 0.10 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.52 7.55 -51.93 -0.39 0.13 16 31 H 0.16 2.45 8.06 -52.48 -0.42 2.03 16 32 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.10 1.66 6.47 -51.93 -0.34 1.32 16 38 H 0.06 0.76 7.58 -51.93 -0.39 0.37 16 39 H 0.14 1.03 7.19 -52.49 -0.38 0.65 16 40 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 41 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16 42 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -35.49 357.49 -8.51 -44.00 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.51 Total: -0.55 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -3.63 Total: -6.46 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.50 Total: -37.86 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.67 Total: -22.18 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.59 Total: 17.66 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.49 -8.51 -44.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.225 kcal (2) G-P(sol) polarization free energy of solvation -35.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds