Wall clock time and date at job start Tue Mar 31 2020 11:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34392 * 125.55753 * 2 1 4 4 C 1.46766 * 106.51234 * 180.24309 * 3 2 1 5 5 C 1.47103 * 126.90149 * 179.75165 * 4 3 2 6 6 O 1.21552 * 120.00067 * 179.97438 * 5 4 3 7 7 O 1.34787 * 119.99805 * 0.02562 * 5 4 3 8 8 C 1.45204 * 117.00170 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.46779 * 30.00287 * 8 7 5 10 10 C 1.52994 * 109.47357 * 270.00449 * 8 7 5 11 11 C 1.50695 * 109.46952 * 149.99693 * 8 7 5 12 12 H 1.08003 * 120.00080 * 35.26828 * 11 8 7 13 13 C 1.37882 * 119.99905 * 215.26176 * 11 8 7 14 14 N 1.31517 * 119.99925 * 185.79309 * 13 11 8 15 15 Si 1.86795 * 119.99892 * 5.78966 * 13 11 8 16 16 H 1.48499 * 109.46989 * 84.85065 * 15 13 11 17 17 H 1.48509 * 109.47153 * 204.84697 * 15 13 11 18 18 H 1.48493 * 109.47528 * 324.84697 * 15 13 11 19 19 C 1.36828 * 106.20233 * 359.75502 * 4 3 2 20 20 C 1.50699 * 125.85983 * 179.97438 * 19 4 3 21 21 N 1.35464 * 108.27656 * 0.02562 * 19 4 3 22 22 C 1.39780 * 124.94030 * 179.97438 * 21 19 4 23 23 C 1.38958 * 119.68768 * 131.78499 * 22 21 19 24 24 C 1.38405 * 119.10432 * 179.72336 * 23 22 21 25 25 C 1.38802 * 118.48466 * 0.53662 * 24 23 22 26 26 C 1.38119 * 119.29563 * 359.48536 * 25 24 23 27 27 N 1.31906 * 120.83630 * 0.24923 * 26 25 24 28 28 H 1.09002 * 109.46985 * 266.38931 * 1 2 3 29 29 H 1.08995 * 109.46724 * 26.38299 * 1 2 3 30 30 H 1.08997 * 109.47102 * 146.38593 * 1 2 3 31 31 H 1.08007 * 126.74346 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47165 * 185.17187 * 10 8 7 33 33 H 1.09000 * 109.46837 * 305.16964 * 10 8 7 34 34 H 1.08999 * 109.47458 * 65.17354 * 10 8 7 35 35 H 0.96996 * 119.99723 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.47272 * 270.04455 * 20 19 4 37 37 H 1.09004 * 109.47038 * 30.04064 * 20 19 4 38 38 H 1.08997 * 109.46961 * 150.04030 * 20 19 4 39 39 H 1.07995 * 120.44796 * 0.02562 * 23 22 21 40 40 H 1.08001 * 120.76165 * 180.26955 * 24 23 22 41 41 H 1.08005 * 120.35102 * 179.75483 * 25 24 23 42 42 H 1.07995 * 119.57664 * 180.23261 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2885 1.0933 0.0000 4 6 3.6758 0.6144 -0.0060 5 6 4.8946 1.4381 -0.0132 6 8 5.9876 0.9063 -0.0172 7 8 4.7993 2.7826 -0.0144 8 6 6.0431 3.5317 -0.0212 9 1 6.8111 2.9561 -0.5380 10 6 6.4868 3.7965 1.4189 11 6 5.8353 4.8440 -0.7323 12 1 4.8926 5.3634 -0.6427 13 6 6.8487 5.3816 -1.4972 14 7 6.7105 6.5786 -2.0244 15 14 8.4180 4.4100 -1.7845 16 1 8.2269 3.4899 -2.9344 17 1 9.5327 5.3459 -2.0795 18 1 8.7421 3.6220 -0.5684 19 6 3.6080 -0.7522 -0.0035 20 6 4.7840 -1.6945 -0.0083 21 7 2.3022 -1.1127 0.0028 22 6 1.8355 -2.4303 0.0065 23 6 0.8516 -2.8093 0.9115 24 6 0.3941 -4.1156 0.9007 25 6 0.9476 -5.0033 -0.0116 26 6 1.9231 -4.5574 -0.8819 27 7 2.3350 -3.3047 -0.8515 28 1 -0.3633 -0.0647 1.0256 29 1 -0.3632 0.9206 -0.4567 30 1 -0.3633 -0.8558 -0.5689 31 1 1.9602 2.1223 -0.0004 32 1 7.3694 4.4362 1.4153 33 1 5.6817 4.2914 1.9619 34 1 6.7256 2.8508 1.9053 35 1 7.4235 6.9569 -2.5622 36 1 5.0627 -1.9226 -1.0370 37 1 5.6266 -1.2266 0.5011 38 1 4.5136 -2.6156 0.5078 39 1 0.4457 -2.0931 1.6106 40 1 -0.3729 -4.4380 1.5893 41 1 0.6159 -6.0306 -0.0435 42 1 2.3541 -5.2433 -1.5960 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:58 Heat of formation + Delta-G solvation = -20.346283 kcal Electronic energy + Delta-G solvation = -25537.879140 eV Core-core repulsion = 21869.274185 eV Total energy + Delta-G solvation = -3668.604955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -43.03929 -41.12283 -40.50415 -37.50247 -35.16358 -34.38921 -34.12507 -33.23377 -32.55650 -30.51987 -30.16512 -27.47108 -26.54292 -25.06181 -24.69461 -23.68860 -22.30360 -21.27822 -20.52502 -19.18095 -18.55878 -17.76756 -17.64876 -17.39517 -16.99360 -16.75422 -16.11981 -16.03301 -15.48665 -15.05882 -14.84028 -14.57471 -14.50759 -14.39561 -14.18287 -14.10277 -14.09137 -13.67825 -13.53498 -13.30748 -13.12764 -13.03453 -12.93883 -12.85962 -12.59327 -12.51679 -11.95339 -11.45913 -11.34180 -11.12949 -11.03551 -10.87259 -10.80097 -10.56160 -9.54733 -9.18964 -8.47161 -6.56057 -0.30850 0.18243 0.48958 1.19964 1.24841 1.28156 1.35993 1.39688 2.15716 2.20323 2.25167 2.63734 2.92479 3.27457 3.60495 3.70199 3.84857 3.93681 4.00576 4.05895 4.14772 4.25250 4.34747 4.39624 4.49162 4.54870 4.60651 4.63530 4.64365 4.72213 4.79907 4.85465 4.89464 5.01336 5.04596 5.13039 5.13744 5.31328 5.40009 5.49843 5.61642 5.68448 5.83994 6.16649 6.20608 6.51456 6.81193 7.00243 7.14104 8.68421 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.025316 B = 0.003107 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.753138 B = 9009.469164 C = 9516.591993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.026 3.974 3 C -0.156 4.156 4 C -0.244 4.244 5 C 0.524 3.476 6 O -0.556 6.556 7 O -0.355 6.355 8 C 0.182 3.818 9 H 0.036 0.964 10 C -0.146 4.146 11 C -0.530 4.530 12 H 0.048 0.952 13 C 0.036 3.964 14 N -0.922 5.922 15 Si 0.928 3.072 16 H -0.272 1.272 17 H -0.263 1.263 18 H -0.251 1.251 19 C 0.126 3.874 20 C -0.075 4.075 21 N -0.391 5.391 22 C 0.295 3.705 23 C -0.160 4.160 24 C -0.051 4.051 25 C -0.155 4.155 26 C 0.108 3.892 27 N -0.522 5.522 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.158 0.842 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.276 0.724 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.155 0.845 40 H 0.183 0.817 41 H 0.181 0.819 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.066 -27.763 7.148 33.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 C -0.179 4.179 4 C -0.252 4.252 5 C 0.373 3.627 6 O -0.451 6.451 7 O -0.271 6.271 8 C 0.129 3.871 9 H 0.054 0.946 10 C -0.203 4.203 11 C -0.567 4.567 12 H 0.066 0.934 13 C -0.165 4.165 14 N -0.560 5.560 15 Si 0.751 3.249 16 H -0.197 1.197 17 H -0.187 1.187 18 H -0.175 1.175 19 C 0.011 3.989 20 C -0.132 4.132 21 N -0.068 5.068 22 C 0.072 3.928 23 C -0.182 4.182 24 C -0.077 4.077 25 C -0.174 4.174 26 C -0.049 4.049 27 N -0.234 5.234 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.176 0.824 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.172 0.828 40 H 0.200 0.800 41 H 0.199 0.801 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -16.152 -27.688 6.459 32.699 hybrid contribution 0.663 0.294 -0.084 0.730 sum -15.489 -27.394 6.375 32.109 Atomic orbital electron populations 1.20542 0.83940 1.04545 1.04493 1.20849 0.95422 0.83136 1.08469 1.22054 0.89598 0.99098 1.07149 1.19431 0.92356 0.91775 1.21619 1.20640 0.88473 0.81998 0.71636 1.90673 1.30309 1.74170 1.49941 1.86694 1.39768 1.17988 1.82649 1.20836 0.81245 0.89194 0.95850 0.94637 1.22129 1.01676 1.00438 0.96092 1.20915 1.01882 1.02893 1.31051 0.93395 1.25644 1.01581 0.95689 0.93608 1.69957 1.35435 1.16665 1.33982 0.86026 0.79579 0.79207 0.80114 1.19700 1.18700 1.17481 1.20610 0.85745 0.92942 0.99557 1.20404 0.92928 0.96346 1.03538 1.41178 1.04679 1.04223 1.56706 1.18448 0.95911 0.83667 0.94823 1.22093 0.97949 0.99544 0.98570 1.22037 0.97848 0.90625 0.97222 1.22710 0.96290 1.03177 0.95272 1.23200 0.94093 0.89602 0.98032 1.67081 1.29523 1.05167 1.21605 0.88213 0.88567 0.90940 0.82417 0.91365 0.91950 0.93615 0.91407 0.90185 0.89972 0.90451 0.82780 0.79962 0.80121 0.79692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 8.89 71.24 0.63 -0.59 16 2 C 0.03 0.69 6.67 40.91 0.27 0.97 16 3 C -0.16 -5.29 10.88 23.62 0.26 -5.03 16 4 C -0.24 -9.83 6.29 -19.05 -0.12 -9.95 16 5 C 0.52 25.30 7.92 70.15 0.56 25.85 16 6 O -0.56 -28.10 14.07 19.67 0.28 -27.82 16 7 O -0.35 -18.72 9.76 -56.98 -0.56 -19.28 16 8 C 0.18 9.98 2.25 29.84 0.07 10.04 16 9 H 0.04 2.01 4.26 -2.38 -0.01 2.00 16 10 C -0.15 -6.90 9.53 71.98 0.69 -6.21 16 11 C -0.53 -32.60 9.24 25.60 0.24 -32.36 16 12 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 13 C 0.04 2.15 5.47 84.66 0.46 2.61 16 14 N -0.92 -57.76 13.96 21.45 0.30 -57.46 16 15 Si 0.93 46.46 27.02 68.60 1.85 48.31 16 16 H -0.27 -13.58 7.11 99.48 0.71 -12.88 16 17 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 18 H -0.25 -12.13 6.78 99.48 0.67 -11.46 16 19 C 0.13 4.35 6.84 41.67 0.28 4.64 16 20 C -0.07 -2.34 9.05 71.24 0.64 -1.69 16 21 N -0.39 -11.01 2.87 -325.18 -0.93 -11.94 16 22 C 0.29 6.43 6.05 132.78 0.80 7.24 16 23 C -0.16 -2.13 8.64 22.48 0.19 -1.94 16 24 C -0.05 -0.33 10.17 22.44 0.23 -0.10 16 25 C -0.16 -0.91 10.11 22.38 0.23 -0.68 16 26 C 0.11 1.33 11.18 84.65 0.95 2.27 16 27 N -0.52 -11.29 9.50 -192.83 -1.83 -13.12 16 28 H 0.10 1.06 7.81 -2.39 -0.02 1.04 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.01 7.55 -2.39 -0.02 0.99 16 31 H 0.16 5.17 8.06 -2.91 -0.02 5.15 16 32 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 36 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.08 2.84 6.47 -2.39 -0.02 2.83 16 38 H 0.08 2.03 7.58 -2.39 -0.02 2.02 16 39 H 0.15 1.62 7.19 -2.91 -0.02 1.60 16 40 H 0.18 -0.21 8.06 -2.91 -0.02 -0.24 16 41 H 0.18 -0.31 8.06 -2.91 -0.02 -0.33 16 42 H 0.19 1.26 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -82.22 357.49 6.49 -75.74 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.00 Total: 10.52 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 6.38 Total: -4.94 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.47 Total: -82.53 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -0.28 Total: -47.10 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.85 Total: 48.31 kcal Total: -82.22 6.49 -75.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.389 kcal (2) G-P(sol) polarization free energy of solvation -82.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds